TCONS_00063137 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063137
Unique NameTCONS_00063137
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length556

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063137 ID=TCONS_00063137|Name=TCONS_00063137|organism=Clytia hemisphaerica|type=transcript|length=556bp
GTCGGAAAAATATTTCTAGTTTAAGATTTAGGTTTTCtggttttgagaaa
tttattgATTTGAAAGGAAAGTTATTCTCGtttcaagaaaaatatatttt
gaccccTACAgggaaaaatttcaagaaaataaaatcttgagaaactttaa
aatgatcatcatgattttaaaaaacctttttaataAATTAACTGATTCCT
TTTGGATtcactcttttgtgcttaactAGGGGGTGGAATAAACGAAGGGC
GTGGGTACTTcagataaaaatcaataaaatggggggtcataATTAAGTGT
TATTGGtctgattttgctaaaaatcccAAGGAAAATAAAGGCTTTTGACC
AATTTCGGCACTTCGTAGCATGAAAGTCATAAAATAGGGGTggggtcatt
ataaagtgatATGGGGTGATTTCTTTTCCAATAATTGCAAAATGATCCCC
CTTCTACAatttaagcacaaaagagtaagCAACCTGGGACCAACTTTTTC
AGCCTCCAGCAATGCCCTAAAAGGAGGTTGTTTGCTCATAAAAAGTACTT
TACAAT
Run BLAST on NCBI

transcript from alignment at scaffold_381:35844..36399

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063137 ID=TCONS_00063137|Name=TCONS_00063137|organism=Clytia hemisphaerica|type=transcript|length=556bp|location=Sequence derived from alignment at scaffold_381:35844..36399 (Clytia hemisphaerica)
ATTGTAAAGTACTTTTTATGAGCAAACAACCTCCTTTTAGGGCATTGCTG
GAGGCTGAAAAAGTTGGTCCCAGGTTGcttactcttttgtgcttaaatTG
TAGAAGGGGGATCATTTTGCAATTATTGGAAAAGAAATCACCCCATatca
ctttataatgaccccACCCCTATTTTATGACTTTCATGCTACGAAGTGCC
GAAATTGGTCAAAAGCCTTTATTTTCCTTgggatttttagcaaaatcaga
CCAATAACACTTAATtatgaccccccattttattgatttttatctgAAGT
ACCCACGCCCTTCGTTTATTCCACCCCCTagttaagcacaaaagagtgaA
TCCAAAAGGAATCAGTTAATTtattaaaaaggttttttaaaatcatgatg
atcattttaaagtttctcaagattttattttcttgaaatttttcccTGTA
ggggtcaaaatatatttttcttgaaaCGAGAATAACTTTCCTTTCAAATc
aataaatttctcaaaaccaGAAAACCTAAATCTTAAACTAGAAATATTTT
TCCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039554XLOC_039554Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063137-exon-scaffold_381-1491911889:35844..36399TCONS_00063137-exon-scaffold_381-1491911889:35844..36399Clytia hemisphaericaexon
TCONS_00063137-exon-scaffold_381-1510915933:35844..36399TCONS_00063137-exon-scaffold_381-1510915933:35844..36399Clytia hemisphaericaexon
TCONS_00063137-exon-scaffold_381-1575043694:35844..36399TCONS_00063137-exon-scaffold_381-1575043694:35844..36399Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_381supercontigscaffold_381:35844..36399 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.136191	0.24331	0	0	1.76203	1.50304	0.982473	1.4963	0.603098	0.533596	0.368693	0.680922	0.202504	0.423696	0.500182	0.186909	0.307009	0.182053	0	0.227462	0.593116	0.144651	0.234456	0	0.924298	0.734035	0	0.598472	0.467209	0.346854
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063137 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top