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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063131 ID=TCONS_00063131|Name=TCONS_00063131|organism=Clytia hemisphaerica|type=transcript|length=811bp
ATCATGCATGTCTTTGAAAACATTGACAATCAATTTCTTTAAGAAATATA
TTACGTACAGCGTAAACATTATTTCTCTGGTCTAAACAACTTATTAAaca
aaatattatattataaaTGATATGCAGTTCAGTTCTTCATTAATCGGGGA
ATTGTCCGTTCGGGGAATCGTCCGTTCGGGGAATAGTATGTCTGGGAATT
GTCctgtcggggaattgtccggtcGGGGAATGATCCGTCGGGGAATTGTc
ggtcggggaattgtccgggaTTCGTTTTTGTACCTCTATTAGCATATATA
TCCTTGAAATAAGGAATTTTAACTACATCCCTTGAACCATAAATTTCGTC
AAAAATGTCATATCCTTCCAGTTTATGAAGTATTTGACCAATGTCTTCGT
TAAGTTTCTTTGCTTTGGTATAGTTATCTTTTGcgttttgaacttttttt
ttacaagcatcCAAACTTCTATCACTTACAGTTTGCACTGCAGAATAAAT
TGTGGCCCAGGCTAAACTTTTATGTACTGTttccaaataagaaaaattgt
CCTTCCAAGAGTTTAAAAGGATTTCTGTTTCAGCTTTGCCCCAGATTAGA
CGAGTGGCTGGACGCTTAGAAGAACTTGGGCTGCTCGTAAGGCTTGTATC
AGGTGTCGTCTGCGTCTCCGGGTATTTTTGATTGCAGCTTTGGGCTGGAA
AAACCATCGTTGACGGTGCGTATCAAAAATTTACCTGTTGTGTTTGTTGT
GAAATTTGTGGTCTTTGCTGATTGCTCATCATCGAAGTGGTACGCGTCAT
TTTACTTCCCA Run BLAST on NCBI protein sequence of TCONS_00063131-protein >TCONS_00063131-protein ID=TCONS_00063131-protein|Name=TCONS_00063131-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
MVFPAQSCNQKYPETQTTPDTSLTSSPSSSKRPATRLIWGKAETEILLNS
WKDNFSYLETVHKSLAWATIYSAVQTVSDRSLDACKKKVQNAKDNYTKAK
KLNEDIGQILHKLEGYDIFDEIYGSRDVVKIPYFKDIYANRGTKTNPGQF
PDRQFPDGSFPDRTIPRQDNSQTYYSPNGRFPERTIPRLMKN Run BLAST on NCBI transcript from alignment at scaffold_380:75322..76132 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063131 ID=TCONS_00063131|Name=TCONS_00063131|organism=Clytia hemisphaerica|type=transcript|length=811bp|location=Sequence derived from alignment at scaffold_380:75322..76132 (Clytia hemisphaerica)
TGGGAAGTAAAATGACGCGTACCACTTCGATGATGAGCAATCAGCAAAGA
CCACAAATTTCACAACAAACACAACAGGTAAATTTTTGATACGCACCGTC
AACGATGGTTTTTCCAGCCCAAAGCTGCAATCAAAAATACCCGGAGACGC
AGACGACACCTGATACAAGCCTTACGAGCAGCCCAAGTTCTTCTAAGCGT
CCAGCCACTCGTCTAATCTGGGGCAAAGCTGAAACAGAAATCCTTTTAAA
CTCTTGGAAGGacaatttttcttatttggaaACAGTACATAAAAGTTTAG
CCTGGGCCACAATTTATTCTGCAGTGCAAACTGTAAGTGATAGAAGTTTG
gatgcttgtaaaaaaaaagttcaaaacgCAAAAGATAACTATACCAAAGC
AAAGAAACTTAACGAAGACATTGGTCAAATACTTCATAAACTGGAAGGAT
ATGACATTTTTGACGAAATTTATGGTTCAAGGGATGTAGTTAAAATTCCT
TATTTCAAGGATATATATGCTAATAGAGGTACAAAAACGAAtcccggaca
attccccgaccgACAATTCCCCGACGGATCATTCCCCgaccggacaattc
cccgacagGACAATTCCCAGACATACTATTCCCCGAACGGACGATTCCCC
GAACGGACAATTCCCCGATTAATGAAGAACTGAACTGCATATCAtttata
atataatattttgtTTAATAAGTTGTTTAGACCAGAGAAATAATGTTTAC
GCTGTACGTAATATATTTCTTAAAGAAATTGATTGTCAATGTTTTCAAAG
ACATGCATGAT Coding sequence (CDS) from alignment at scaffold_380:75322..76132 >TCONS_00063131 ID=TCONS_00063131|Name=TCONS_00063131|organism=Clytia hemisphaerica|type=CDS|length=579bp|location=Sequence derived from alignment at scaffold_380:75322..76132 (Clytia hemisphaerica)
ATGGTTTTTCCAGCCCAAAGCTGCAATCAAAAATACCCGGAGACGCAGAC
GACACCTGATACAAGCCTTACGAGCAGCCCAAGTTCTTCTAAGCGTCCAG
CCACTCGTCTAATCTGGGGCAAAGCTGAAACAGAAATCCTTTTAAACTCT
TGGAAGGacaatttttcttatttggaaACAGTACATAAAAGTTTAGCCTG
GGCCACAATTTATTCTGCAGTGCAAACTGTAAGTGATAGAAGTTTGgatg
cttgtaaaaaaaaagttcaaaacgCAAAAGATAACTATACCAAAGCAAAG
AAACTTAACGAAGACATTGGTCAAATACTTCATAAACTGGAAGGATATGA
CATTTTTGACGAAATTTATGGTTCAAGGGATGTAGTTAAAATTCCTTATT
TCAAGGATATATATGCTAATAGAGGTACAAAAACGAAtcccggacaattc
cccgaccgACAATTCCCCGACGGATCATTCCCCgaccggacaattccccg
acagGACAATTCCCAGACATACTATTCCCCGAACGGACGATTCCCCGAAC
GGACAATTCCCCGATTAATGAAGAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063131-exon-scaffold_380-1491911889:75322..76132 | TCONS_00063131-exon-scaffold_380-1491911889:75322..76132 | Clytia hemisphaerica | exon |
| TCONS_00063131-exon-scaffold_380-1510915933:75322..76132 | TCONS_00063131-exon-scaffold_380-1510915933:75322..76132 | Clytia hemisphaerica | exon |
| TCONS_00063131-exon-scaffold_380-1575043694:75322..76132 | TCONS_00063131-exon-scaffold_380-1575043694:75322..76132 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_380 | supercontig | scaffold_380:75322..76132 . |
Blast
The following BLAST results are available for this feature:
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