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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063129 ID=TCONS_00063129|Name=TCONS_00063129|organism=Clytia hemisphaerica|type=transcript|length=1548bp
CAAATCTGAATCCACCACGAATCATTCGACGGAGGAGATTTCGATACACA
ACATCCAAACGGTCAAATTGTCTTTGGGTCAGATTCCAGTTCTGACAGGC
GTATACTAGCCTACTTCGCACAAAGTTGTTCAGGAAAAGTATGCGAGTTT
TCAGATTAATTTGAATATTCTGAATTAAATTTGACATTTGTTGAAATTTA
GTGTTAGCAAGCTGGATGCGGTAGTTTATCTCCTTTTCACCAGTGTTCGG
CTGGTTACAATCGAGATAGGCTCCCAGGTATTTGAATGCAGAAACATTGG
CTAGATGGCATTCGTTTAATTCGACAATTGAGTTTGGATATGGAGAATCT
ACTGGATAATTGAGAATCATCGTCTCTGTCTTTTGAGCATTGACAGATAG
ACCGAACTTGACGAAAACATTATCAAGAGGAATTGTTGCAATTTATAAAC
TCTCTTGATCTTTCAAGGAATAAGACTAAATCGTCGGCGTAACCGCTCCA
GGGTAATATTGATAAGTTTGAGAGATTAGTGTTCTTTTTACGAGTCGATA
ATCTCTCTGCTCGTGAAAGAGAGCTAGTGCTGATTTGGTATTTGTGATCA
AAGAACTTGATATCATCATTTAAGTGTGATTTCTCGAGTATCAGACGCAT
GACGAAATCGAGATATAAGTTGAACAAAAACAGGCTTTCTGGTCCACCCT
GGTGGACAGACAGAAGATGTTTGGAATAATTCTCCTTCATAGGTTAGAGA
GGTGTGTTGATAAAGTTTTTCCAATATCTTGATCATAATCGGTGACTTTT
TGTCGGTGAAACGAAGACAAATTGTATCAAACAGCCATTTACGGGTTATA
TGATCGAAAGCGGCTGAGAGATCGACAAATAATAGATACAACGACTATTG
TTTTCGATGACTGATTTGGTGTATTCTCTTTACTGTGTAAATCCCATCAG
TAGTGGAGTCGGAATAAGATGATATTCGCAACGAGCTTGCAGATAGTAGA
TCCGATACTAAGACCCCGATACTTTGATACGTCCTTTTTTGAGCCTTTTC
CTTTCCAGAGTGTTTTCAGATGGGAGTTCGGCGTTCGGTAAATCTAGATT
TTCCANGCCTTTTCCTTTCCAGAGTGTTCTCAGATGGGAGTTACCCCAAG
CGTTCGGTAAATCTAGATTTTCCCACAAGTTGTTGGTGATTCTTTGGATT
ACTTGAATCATTATCGGATGTGAACATTTCTTCAGTAGCTCTGCTTCAAC
GTCATTGCTTGCTTTATTATTTTTGAGGAGACGGATGTGTTTTTCTATTT
CATCGGCTGTAGGTGGGAGGTCGTTGACGACAGTACTGTCAGAAATCTTT
CGAAGTTCCTTAACAAATTTCGGAAGTGTCTGATTTATTTCCTCAGGTGA
CGTATCAATTGATGGGTCAGTAGGgttaaaatgtttcttaaagTGTTCTA
AGAGTTTATCGGTTGGCCGGTTGGGCAAGCATTGTTTGTTGGTTTGAGGG
TAGTTTCCTGTCTTTTGGCACGATGAAATAGCTTTTCGATCTGCTTGT Run BLAST on NCBI protein sequence of TCONS_00063129-protein >TCONS_00063129-protein ID=TCONS_00063129-protein|Name=TCONS_00063129-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
QADRKAISSCQKTGNYPQTNKQCLPNRPTDKLLEHFKKHFNPTDPSIDTS
PEEINQTLPKFVKELRKISDSTVVNDLPPTADEIEKHIRLLKNNKASNDV
EAELLKKCSHPIMIQVIQRITNNLWENLDLPNAWGNSHLRTLWKGKGXEN
LDLPNAELPSENTLERKRLKKGRIKVSGS Run BLAST on NCBI transcript from alignment at scaffold_380:56551..58098 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063129 ID=TCONS_00063129|Name=TCONS_00063129|organism=Clytia hemisphaerica|type=transcript|length=1548bp|location=Sequence derived from alignment at scaffold_380:56551..58098 (Clytia hemisphaerica)
ACAAGCAGATCGAAAAGCTATTTCATCGTGCCAAAAGACAGGAAACTACC
CTCAAACCAACAAACAATGCTTGCCCAACCGGCCAACCGATAAACTCTTA
GAACActttaagaaacattttaacCCTACTGACCCATCAATTGATACGTC
ACCTGAGGAAATAAATCAGACACTTCCGAAATTTGTTAAGGAACTTCGAA
AGATTTCTGACAGTACTGTCGTCAACGACCTCCCACCTACAGCCGATGAA
ATAGAAAAACACATCCGTCTCCTCAAAAATAATAAAGCAAGCAATGACGT
TGAAGCAGAGCTACTGAAGAAATGTTCACATCCGATAATGATTCAAGTAA
TCCAAAGAATCACCAACAACTTGTGGGAAAATCTAGATTTACCGAACGCT
TGGGGTAACTCCCATCTGAGAACACTCTGGAAAGGAAAAGGCNTGGAAAA
TCTAGATTTACCGAACGCCGAACTCCCATCTGAAAACACTCTGGAAAGGA
AAAGGCTCAAAAAAGGACGTATCAAAGTATCGGGGTCTTAGTATCGGATC
TACTATCTGCAAGCTCGTTGCGAATATCATCTTATTCCGACTCCACTACT
GATGGGATTTACACAGTAAAGAGAATACACCAAATCAGTCATCGAAAACA
ATAGTCGTTGTATCTATTATTTGTCGATCTCTCAGCCGCTTTCGATCATA
TAACCCGTAAATGGCTGTTTGATACAATTTGTCTTCGTTTCACCGACAAA
AAGTCACCGATTATGATCAAGATATTGGAAAAACTTTATCAACACACCTC
TCTAACCTATGAAGGAGAATTATTCCAAACATCTTCTGTCTGTCCACCAG
GGTGGACCAGAAAGCCTGTTTTTGTTCAACTTATATCTCGATTTCGTCAT
GCGTCTGATACTCGAGAAATCACACTTAAATGATGATATCAAGTTCTTTG
ATCACAAATACCAAATCAGCACTAGCTCTCTTTCACGAGCAGAGAGATTA
TCGACTCGTAAAAAGAACACTAATCTCTCAAACTTATCAATATTACCCTG
GAGCGGTTACGCCGACGATTTAGTCTTATTCCTTGAAAGATCAAGAGAGT
TTATAAATTGCAACAATTCCTCTTGATAATGTTTTCGTCAAGTTCGGTCT
ATCTGTCAATGCTCAAAAGACAGAGACGATGATTCTCAATTATCCAGTAG
ATTCTCCATATCCAAACTCAATTGTCGAATTAAACGAATGCCATCTAGCC
AATGTTTCTGCATTCAAATACCTGGGAGCCTATCTCGATTGTAACCAGCC
GAACACTGGTGAAAAGGAGATAAACTACCGCATCCAGCTTGCTAACACTA
AATTTCAACAAATGTCAAATTTAATTCAGAATATTCAAATTAATCTGAAA
ACTCGCATACTTTTCCTGAACAACTTTGTGCGAAGTAGGCTAGTATACGC
CTGTCAGAACTGGAATCTGACCCAAAGACAATTTGACCGTTTGGATGTTG
TGTATCGAAATCTCCTCCGTCGAATGATTCGTGGTGGATTCAGATTTG Coding sequence (CDS) from alignment at scaffold_380:56551..58098 >TCONS_00063129 ID=TCONS_00063129|Name=TCONS_00063129|organism=Clytia hemisphaerica|type=CDS|length=540bp|location=Sequence derived from alignment at scaffold_380:56551..58098 (Clytia hemisphaerica)
CAAGCAGATCGAAAAGCTATTTCATCGTGCCAAAAGACAGGAAACTACCC
TCAAACCAACAAACAATGCTTGCCCAACCGGCCAACCGATAAACTCTTAG
AACActttaagaaacattttaacCCTACTGACCCATCAATTGATACGTCA
CCTGAGGAAATAAATCAGACACTTCCGAAATTTGTTAAGGAACTTCGAAA
GATTTCTGACAGTACTGTCGTCAACGACCTCCCACCTACAGCCGATGAAA
TAGAAAAACACATCCGTCTCCTCAAAAATAATAAAGCAAGCAATGACGTT
GAAGCAGAGCTACTGAAGAAATGTTCACATCCGATAATGATTCAAGTAAT
CCAAAGAATCACCAACAACTTGTGGGAAAATCTAGATTTACCGAACGCTT
GGGGTAACTCCCATCTGAGAACACTCTGGAAAGGAAAAGGCNTGGAAAAT
CTAGATTTACCGAACGCCGAACTCCCATCTGAAAACACTCTGGAAAGGAA
AAGGCTCAAAAAAGGACGTATCAAAGTATCGGGGTCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063129-exon-scaffold_380-1491911889:56551..58098 | TCONS_00063129-exon-scaffold_380-1491911889:56551..58098 | Clytia hemisphaerica | exon |
| TCONS_00063129-exon-scaffold_380-1510915933:56551..58098 | TCONS_00063129-exon-scaffold_380-1510915933:56551..58098 | Clytia hemisphaerica | exon |
| TCONS_00063129-exon-scaffold_380-1575043694:56551..58098 | TCONS_00063129-exon-scaffold_380-1575043694:56551..58098 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_380 | supercontig | scaffold_380:56551..58098 . |
Blast
The following BLAST results are available for this feature:
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