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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063126 ID=TCONS_00063126|Name=TCONS_00063126|organism=Clytia hemisphaerica|type=transcript|length=1075bp
TAAAGACGTATCATTCATCACTTATTCAGCAGCTAGTTTGTTGACTTCGA
AACACCAAACATCGATCCCCGTCCCAATCACAGCGTCCACATTCATTCAT
TCACCATGgcaacaaaagaaagaacttCTGTTCCATACCAATAATGATTC
CGCTGACATTAGCATAAATAGCACCAAAGCAACTGATATTACATGCAAGC
GAAGATCAAGTTACAGGACGCCAGAATTTCCTCATTTGACACCTGACCAG
AGCCATTCTACACATTCGATGTCCATAGATTTTCCATTTGAACGAATTAT
TTCTCGCAATAATAAAAGTGACTCGTTCTATAAAGAAAGTGACGATACGA
TTGATGATCTCAAACTTAACCCTAACCTCGACAAACAGAAATTGATCAAT
CTTAAAGAAACTGATTTGTAATTGTTGGCATGAATGCTGAAGTTGGGAGG
CATACTCGGGCAAATTAAGACACGTCTAAATTTACCGTAATTTTTTATCG
CCACTTCCACTTGTCAAATCATATCACTTCCAACATCGAAAGTTGTGTAT
TagagtgtagatcactggagTGGCTGTGTCATAATCAATTTAACCAAAAA
ATgatattaggcaaaaaccaaGAAATAATTTCAGTTTGACTggtggtata
aacatgaaatttggaccaaagttgcacatcattaGAAGGATCATTATGGT
TGTTCATTTGTAGCAAAACtctatatttttcatttaatgaaacatttttt
catttagtgaaatattttttcatttagtgaaatactagacggttcccgtc
gtcgcaaacgccagtttagcttgcgcatcaaaagcccttaggatgatGAA
TATGGTATTGCTGCCGATGCTCTCTAACTTTATTTTTGAAGGGAATTCGA
ATTAGTTTTCATCAACCACAGCTCAGCTCCTATCTTGtgttacagacatt
tttcataaacgccgtcacccggcgtcgcacccgctgagtagagtgttgtt
gaacatatcaaaagccctttggatggtgggggaggGTAATAAGCTTGAAT
TCTAAGACCAAATAACGAAATATTA Run BLAST on NCBI protein sequence of TCONS_00063126-protein >TCONS_00063126-protein ID=TCONS_00063126-protein|Name=TCONS_00063126-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
KDVSFITYSAASLLTSKHQTSIPVPITASTFIHSPWQQKKELLFHTNNDS
ADISINSTKATDITCKRRSSYRTPEFPHLTPDQSHSTHSMSIDFPFERII
SRNNKSDSFYKESDDTIDDLKLNPNLDKQKLINLKETDL Run BLAST on NCBI transcript from alignment at scaffold_380:62563..64168- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063126 ID=TCONS_00063126|Name=TCONS_00063126|organism=Clytia hemisphaerica|type=transcript|length=1606bp|location=Sequence derived from alignment at scaffold_380:62563..64168- (Clytia hemisphaerica)
TAAAGACGTATCATTCATCACTTATTCAGCAGGTTAACTTTTATTAGCTT
GTGATTTAAATACTCTCGCAGTTAATTGAAAATATAAGGGTAAATTTACT
CAGGTAAAGCTTCTTCGTGTGCACAAACTTGTTATAGGCAAACTAAAATG
ATCGATTTACCATTCAAACCCGGCAGACGTGTATGCACCTTTTGAATTTG
CTAATATACCGTTTCCTAGACTCGAGGCTATAACTCCTGACCACTTGATT
TAAAAGGGTATAAACCAAATGCTTTTAGAAAGAATATAAAAATACCTTTT
CAATGGTACCATAACCATTGCCTAACTTTCAAATTACAAGCTTTTATGCC
AATTTGAAATTTTGAAGTAAAAGAAAAAGTTGGAAATTTTCACATTTTTC
AAAAAACGTCGCGCGCTGGAAAGGTTAAGATGGTGGGAAGGATTTGACCA
TTCTTCCACTACACGATATCATCACTCTTTTGCTGAACGGTAAAAATAAG
GGTGAAAATTAGAAGGTTGACTATCTTGTGTTTAAATTGGAGTTTTTTTT
GTTCATTTTACAGCTAGTTTGTTGACTTCGAAACACCAAACATCGATCCC
CGTCCCAATCACAGCGTCCACATTCATTCATTCACCATGGCAACAAAAGA
AAGAACTTCTGTTCCATACCAATAATGATTCCGCTGACATTAGCATAAAT
AGCACCAAAGCAACTGATATTACATGCAAGCGAAGATCAAGTTACAGGAC
GCCAGAATTTCCTCATTTGACACCTGACCAGAGCCATTCTACACATTCGA
TGTCCATAGATTTTCCATTTGAACGAATTATTTCTCGCAATAATAAAAGT
GACTCGTTCTATAAAGAAAGTGACGATACGATTGATGATCTCAAACTTAA
CCCTAACCTCGACAAACAGAAATTGATCAATCTTAAAGAAACTGATTTGT
AATTGTTGGCATGAATGCTGAAGTTGGGAGGCATACTCGGGCAAATTAAG
ACACGTCTAAATTTACCGTAATTTTTTATCGCCACTTCCACTTGTCAAAT
CATATCACTTCCAACATCGAAAGTTGTGTATTAGAGTGTAGATCACTGGA
GTGGCTGTGTCATAATCAATTTAACCAAAAAATGATATTAGGCAAAAACC
AAGAAATAATTTCAGTTTGACTGGTGGTATAAACATGAAATTTGGACCAA
AGTTGCACATCATTAGAAGGATCATTATGGTTGTTCATTTGTAGCAAAAC
TCTATATTTTTCATTTAATGAAACATTTTTTCATTTAGTGAAATATTTTT
TCATTTAGTGAAATACTAGACGGTTCCCGTCGTCGCAAACGCCAGTTTAG
CTTGCGCATCAAAAGCCCTTAGGATGATGAATATGGTATTGCTGCCGATG
CTCTCTAACTTTATTTTTGAAGGGAATTCGAATTAGTTTTCATCAACCAC
AGCTCAGCTCCTATCTTGTGTTACAGACATTTTTCATAAACGCCGTCACC
CGGCGTCGCACCCGCTGAGTAGAGTGTTGTTGAACATATCAAAAGCCCTT
TGGATGGTGGGGGAGGGTAATAAGCTTGAATTCTAAGACCAAATAACGAA
ATATTA Coding sequence (CDS) from alignment at scaffold_380:62563..64168- >TCONS_00063126 ID=TCONS_00063126|Name=TCONS_00063126|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at scaffold_380:62563..64168- (Clytia hemisphaerica)
CTAGTTTGTTGACTTCGAAACACCAAACATCGATCCCCGTCCCAATCACA
GCGTCCACATTCATTCATTCACCATGGCAACAAAAGAAAGAACTTCTGTT
CCATACCAATAATGATTCCGCTGACATTAGCATAAATAGCACCAAAGCAA
CTGATATTACATGCAAGCGAAGATCAAGTTACAGGACGCCAGAATTTCCT
CATTTGACACCTGACCAGAGCCATTCTACACATTCGATGTCCATAGATTT
TCCATTTGAACGAATTATTTCTCGCAATAATAAAAGTGACTCGTTCTATA
AAGAAAGTGACGATACGATTGATGATCTCAAACTTAACCCTAACCTCGAC
AAACAGAAATTGATCAATCTTAAAGAAACTGATTTGTAAAAAGACGTATC
ATTCATCACTTATTCAGCAGCTAGTTTGTTGACTTCGAAACACCAAACAT
CGATCCCCGTCCCAATCACAGCGTCCACATTCATTCATTCACCATGGCAA
CAAAAGAAAGAACTTCTGTTCCATACCAATAATGATTCCGCTGACATTAG
CATAAATAGCACCAAAGCAACTGATATTACATGCAAGCGAAGATCAAGTT
ACAGGACGCCAGAATTTCCTCATTTGACACCTGACCAGAGCCATTCTACA
CATTCGATGTCCATAGATTTTCCATTTGAACGAATTATTTCTCGCAATAA
TAAAAGTGACTCGTTCTATAAAGAAAGTGACGATACGATTGATGATCTCA
AACTTAACCCTAACCTCGACAAACAGAAATTGATCAATCTTAAAGAAACT
GATTTGTAAAAAGACGTATCATTCATCACTTATTCAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063126-exon-scaffold_380-1575043694:64137..64168 | TCONS_00063126-exon-scaffold_380-1575043694:64137..64168 | Clytia hemisphaerica | exon |
| TCONS_00063126-exon-scaffold_380-1575043694:62563..63605 | TCONS_00063126-exon-scaffold_380-1575043694:62563..63605 | Clytia hemisphaerica | exon |
| TCONS_00063126-exon-scaffold_380-1510915933:64137..64168 | TCONS_00063126-exon-scaffold_380-1510915933:64137..64168 | Clytia hemisphaerica | exon |
| TCONS_00063126-exon-scaffold_380-1510915933:62563..63605 | TCONS_00063126-exon-scaffold_380-1510915933:62563..63605 | Clytia hemisphaerica | exon |
| TCONS_00063126-exon-scaffold_380-1491911889:64137..64168 | TCONS_00063126-exon-scaffold_380-1491911889:64137..64168 | Clytia hemisphaerica | exon |
| TCONS_00063126-exon-scaffold_380-1491911889:62563..63605 | TCONS_00063126-exon-scaffold_380-1491911889:62563..63605 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_380 | supercontig | scaffold_380:62563..64168 - |
Blast
The following BLAST results are available for this feature:
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