TCONS_00063076 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063076
Unique NameTCONS_00063076
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length484

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063076 ID=TCONS_00063076|Name=TCONS_00063076|organism=Clytia hemisphaerica|type=transcript|length=484bp
CTGCACTACAAAAACAACACATGACATAAATAATAATAGCTACTGTACCC
AGTAAAATTCTATGTATATATTTtctgcaatttttaaacaaaatatagAG
TTTAAAGGATAACTCAATCAAAGGCTGAACGGTACTGCATTTCAAAAAAA
GGGGGGCTGTATTGTGAAATCCAAGGCCACACCAGGCAATGACTGAACCC
TATCGAACTGATTTTCGTAATTGAACGATCGGATTTCTTAGAACGAAATC
GaacgataggtgttcgattaaCAAATCTGATCGAACAGTAATCAAACTTT
ACCGGGGAAAATCTTCAGTTCAATTTAAGTTCGATTACTATCGcagtttg
attaagtttgataagtgtttttgtagctcaaatggttccagttattgcta
gtgggttttcaaattagcatcaatttgacgttagttgtgggaagaatcga
tatatGAGTGACCCCTATAGCTAACTGATTTAag
Run BLAST on NCBI

transcript from alignment at scaffold_379:93432..93915

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063076 ID=TCONS_00063076|Name=TCONS_00063076|organism=Clytia hemisphaerica|type=transcript|length=484bp|location=Sequence derived from alignment at scaffold_379:93432..93915 (Clytia hemisphaerica)
ctTAAATCAGTTAGCTATAGGGGTCACTCatatatcgattcttcccacaa
ctaacgtcaaattgatgctaatttgaaaacccactagcaataactggaac
catttgagctacaaaaacacttatcaaacttaatcaaactgCGATAGTAA
TCGAACTTAAATTGAACTGAAGATTTTCCCCGGTAAAGTTTGATTACTGT
TCGATCAGATTTGttaatcgaacacctatcgttCGATTTCGTTCTAAGAA
ATCCGATCGTTCAATTACGAAAATCAGTTCGATAGGGTTCAGTCATTGCC
TGGTGTGGCCTTGGATTTCACAATACAGCCCCCCTTTTTTTGAAATGCAG
TACCGTTCAGCCTTTGATTGAGTTATCCTTTAAACTctatattttgttta
aaaattgcagaAAATATATACATAGAATTTTACTGGGTACAGTAGCTATT
ATTATTTATGTCATGTGTTGTTTTTGTAGTGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039507XLOC_039507Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063076-exon-scaffold_379-1491911889:93432..93915TCONS_00063076-exon-scaffold_379-1491911889:93432..93915Clytia hemisphaericaexon
TCONS_00063076-exon-scaffold_379-1510915933:93432..93915TCONS_00063076-exon-scaffold_379-1510915933:93432..93915Clytia hemisphaericaexon
TCONS_00063076-exon-scaffold_379-1575043694:93432..93915TCONS_00063076-exon-scaffold_379-1575043694:93432..93915Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_379supercontigscaffold_379:93432..93915 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.51604	0.377415	0.292143	0.285817	0.598507	0.412437	0.497588	0.465836	0.108714	0	0.130704	0.17184	0.678315	0.0891046	0.439537	1.33646	0.0968473	0.496327	0	0.430523	0.818036	0.182523	0	0.134481	0.138512	0	1.41519	0.188791	0.572764	0.145889
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063076 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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