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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063030 ID=TCONS_00063030|Name=TCONS_00063030|organism=Clytia hemisphaerica|type=transcript|length=1660bp
CGTTTACAGCACTACATGTCCTGTCAATGCACTCACCCACCTTTTATCGA
TTCTCAAAGAAACACTTAACAACCATGCACCTATCATCACTAAACGCATC
AAAGGTAAACCATCACCTTGGATGACAGAGGACCTCAAAAAACAAATGAA
TACTCGCGACCAGCTAAACCGACGTGCTAAAAAGTCTCGAAACAACTATG
ATTGGCAAAGTTATTGTCGAAAAAAGAActttgttaaaaatgaaatcatA
CGAGCCAAAAGAAATCACTTTAAAAACGAACTGAAGAAGAATGCTAATAA
CCCAGACCGCTTTTGGAAAatcgttaagaaaatttttcctgTCAATAACA
AATCGAACGCTATTACGAAAAGTTTTAATCTCTCTGATGGTGAAACAACG
ACTGACGAAGACACGATATCTGACGGATTCTGCAAGTTTTATTCTTCAAG
CGCGAAAAACTTAAAGGAAAagtcttttcttttgaaaaactttctgtGGA
GCTATGCAACACCCAATAATAGATACTCCACATTaccaaatttcaaactt
tcaagagTTTCTGATATTCAAGTACTCAAATACCTTAAAAACTTGAAACG
GAAATGTGCTACTGGGTTAGATGATTTACCTGCATCTTACCTCAAAGATA
TTGCTTATGTCATCGCAAAACCGTTAACCCACACCATCAACACTCTATAT
CAACTGGTATTGTACCAAATGAGCTAAAATCGGCTCGAATTACACCGATT
TTCAAATCAGGGAATAATCGTCAGCTCGAAAATTGCCGCCCCATCAGTAT
ACTTCCAGTTATTTCCAAGATCTACGAAAAATGCATTCACGCCCAGTTGA
TGAATTATCTAGAATCCAATCATCTCCTTGCTCCGAATCAATACGGATAT
CGAAGTAAAAGATCAACTGAACTTGCAACTGCTTACTTCTGTGATAGCAT
TCGACGTGAGATGGACAATGGAAAGTTGACTGGTGCAATCTTTGTCGATC
TCAGCAAGGCCTTCGACAACATAGGTCATTCGACAATCATCGATAAATTG
TCGAGCTTCGGAATTAACGGATTAGGACTGGATCTCAAGTTACCTCTTCG
GACGACATCAACGTGTGCGCTACAATGGATCATTATCACCTCCATCTCAG
ATCTTCTGTGGCGTACCTCAAGGATCCATCCTGGGACCTCTGCTGTTTCT
GTTANCTTCGGACGACATCAACGTGTGCGCTACAATGGATCATTATCACC
TCCATCTCAGATCTTCTGTGGCGTACCTCAAGGATCCATCCTGGGACCTC
TGTTGTTTCTGTTAATCTTCAACGACTCAACAAAATCGATAACCATCTGT
AAAATGATGATATATGCAGACGACACTGTAATTTTCTATTCAGATAAGAA
TATCGCCCGAATCCACGAGAACCTGCAAAGTGACTATAATAGTTTTGTCA
CTTGGTTAGAACACAATGCACTTATCATCAACACAAAAATTGGTAAAACT
GAAACGATGCTTTTCGGTACCGGGAAAAGAATCAGCATGACAGAAGATAC
TTCTCTTTCAATAAAACATAAAGAGAATATTATCAATCAAACGAACAGTT
ACAAATACCTTGGTCTCTCACTATCAAATACACTCTGTATGTCACAACAC
ATCACCTCGT Run BLAST on NCBI protein sequence of TCONS_00063030-protein >TCONS_00063030-protein ID=TCONS_00063030-protein|Name=TCONS_00063030-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
MNYLESNHLLAPNQYGYRSKRSTELATAYFCDSIRREMDNGKLTGAIFVD
LSKAFDNIGHSTIIDKLSSFGINGLGLDLKLPLRTTSTCALQWIIITSIS
DLLWRTSRIHPGTSAVSVXFGRHQRVRYNGSLSPPSQIFCGVPQGSILGP
LLFLLIFNDSTKSITICKMMIYADDTVIFYSDKNIARIHENLQSDYNSFV
TWLEHNALIINTKIGKTETMLFGTGKRISMTEDTSLSIKHKENIINQTNS
YKYLGLSLSNTLCMSQHITS Run BLAST on NCBI transcript from alignment at scaffold_376:51783..53442 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063030 ID=TCONS_00063030|Name=TCONS_00063030|organism=Clytia hemisphaerica|type=transcript|length=1660bp|location=Sequence derived from alignment at scaffold_376:51783..53442 (Clytia hemisphaerica)
ACGAGGTGATGTGTTGTGACATACAGAGTGTATTTGATAGTGAGAGACCA
AGGTATTTGTAACTGTTCGTTTGATTGATAATATTCTCTTTATGTTTTAT
TGAAAGAGAAGTATCTTCTGTCATGCTGATTCTTTTCCCGGTACCGAAAA
GCATCGTTTCAGTTTTACCAATTTTTGTGTTGATGATAAGTGCATTGTGT
TCTAACCAAGTGACAAAACTATTATAGTCACTTTGCAGGTTCTCGTGGAT
TCGGGCGATATTCTTATCTGAATAGAAAATTACAGTGTCGTCTGCATATA
TCATCATTTTACAGATGGTTATCGATTTTGTTGAGTCGTTGAAGATTAAC
AGAAACAACAGAGGTCCCAGGATGGATCCTTGAGGTACGCCACAGAAGAT
CTGAGATGGAGGTGATAATGATCCATTGTAGCGCACACGTTGATGTCGTC
CGAAGNTAACAGAAACAGCAGAGGTCCCAGGATGGATCCTTGAGGTACGC
CACAGAAGATCTGAGATGGAGGTGATAATGATCCATTGTAGCGCACACGT
TGATGTCGTCCGAAGAGGTAACTTGAGATCCAGTCCTAATCCGTTAATTC
CGAAGCTCGACAATTTATCGATGATTGTCGAATGACCTATGTTGTCGAAG
GCCTTGCTGAGATCGACAAAGATTGCACCAGTCAACTTTCCATTGTCCAT
CTCACGTCGAATGCTATCACAGAAGTAAGCAGTTGCAAGTTCAGTTGATC
TTTTACTTCGATATCCGTATTGATTCGGAGCAAGGAGATGATTGGATTCT
AGATAATTCATCAACTGGGCGTGAATGCATTTTTCGTAGATCTTGGAAAT
AACTGGAAGTATACTGATGGGGCGGCAATTTTCGAGCTGACGATTATTCC
CTGATTTGAAAATCGGTGTAATTCGAGCCGATTTTAGCTCATTTGGTACA
ATACCAGTTGATATAGAGTGTTGATGGTGTGGGTTAACGGTTTTGCGATG
ACATAAGCAATATCTTTGAGGTAAGATGCAGGTAAATCATCTAACCCAGT
AGCACATTTCCGTTTCAAGTTTTTAAGGTATTTGAGTACTTGAATATCAG
AAActcttgaaagtttgaaatttggtAATGTGGAGTATCTATTATTGGGT
GTTGCATAGCTCCacagaaagtttttcaaaagaaaagactTTTCCTTTAA
GTTTTTCGCGCTTGAAGAATAAAACTTGCAGAATCCGTCAGATATCGTGT
CTTCGTCAGTCGTTGTTTCACCATCAGAGAGATTAAAACTTTTCGTAATA
GCGTTCGATTTGTTATTGAcaggaaaaattttcttaacgatTTTCCAAAA
GCGGTCTGGGTTATTAGCATTCTTCTTCAGTTCGTTTTTAAAGTGATTTC
TTTTGGCTCGTatgatttcatttttaacaaagTTCTTTTTTCGACAATAA
CTTTGCCAATCATAGTTGTTTCGAGACTTTTTAGCACGTCGGTTTAGCTG
GTCGCGAGTATTCATTTGTTTTTTGAGGTCCTCTGTCATCCAAGGTGATG
GTTTACCTTTGATGCGTTTAGTGATGATAGGTGCATGGTTGTTAAGTGTT
TCTTTGAGAATCGATAAAAGGTGGGTGAGTGCATTGACAGGACATGTAGT
GCTGTAAACG Coding sequence (CDS) from alignment at scaffold_376:51783..53442 >TCONS_00063030 ID=TCONS_00063030|Name=TCONS_00063030|organism=Clytia hemisphaerica|type=CDS|length=810bp|location=Sequence derived from alignment at scaffold_376:51783..53442 (Clytia hemisphaerica)
CGAGGTGATGTGTTGTGACATACAGAGTGTATTTGATAGTGAGAGACCAA
GGTATTTGTAACTGTTCGTTTGATTGATAATATTCTCTTTATGTTTTATT
GAAAGAGAAGTATCTTCTGTCATGCTGATTCTTTTCCCGGTACCGAAAAG
CATCGTTTCAGTTTTACCAATTTTTGTGTTGATGATAAGTGCATTGTGTT
CTAACCAAGTGACAAAACTATTATAGTCACTTTGCAGGTTCTCGTGGATT
CGGGCGATATTCTTATCTGAATAGAAAATTACAGTGTCGTCTGCATATAT
CATCATTTTACAGATGGTTATCGATTTTGTTGAGTCGTTGAAGATTAACA
GAAACAACAGAGGTCCCAGGATGGATCCTTGAGGTACGCCACAGAAGATC
TGAGATGGAGGTGATAATGATCCATTGTAGCGCACACGTTGATGTCGTCC
GAAGNTAACAGAAACAGCAGAGGTCCCAGGATGGATCCTTGAGGTACGCC
ACAGAAGATCTGAGATGGAGGTGATAATGATCCATTGTAGCGCACACGTT
GATGTCGTCCGAAGAGGTAACTTGAGATCCAGTCCTAATCCGTTAATTCC
GAAGCTCGACAATTTATCGATGATTGTCGAATGACCTATGTTGTCGAAGG
CCTTGCTGAGATCGACAAAGATTGCACCAGTCAACTTTCCATTGTCCATC
TCACGTCGAATGCTATCACAGAAGTAAGCAGTTGCAAGTTCAGTTGATCT
TTTACTTCGATATCCGTATTGATTCGGAGCAAGGAGATGATTGGATTCTA
GATAATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063030-exon-scaffold_376-1491911889:51783..53442 | TCONS_00063030-exon-scaffold_376-1491911889:51783..53442 | Clytia hemisphaerica | exon |
| TCONS_00063030-exon-scaffold_376-1510915933:51783..53442 | TCONS_00063030-exon-scaffold_376-1510915933:51783..53442 | Clytia hemisphaerica | exon |
| TCONS_00063030-exon-scaffold_376-1575043694:51783..53442 | TCONS_00063030-exon-scaffold_376-1575043694:51783..53442 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_376 | supercontig | scaffold_376:51783..53442 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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