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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063027 ID=TCONS_00063027|Name=TCONS_00063027|organism=Clytia hemisphaerica|type=transcript|length=3782bp aaggcCTTTAAACTTTACAATCCTTCATTAATTGACAAGATTTTTCAATC AATGAacctattgcttgatacttttctcaaacaaagaaaattcttttggg GACACCCAAATATTGGGGGTACGTAATTACTTTGGAGACGTAACTGAACC CTGGAGGAGCCTCGAGTGTGACAAGAACACctttattctaatttttttcc ttcaatatTATTGAACCCTTTTTTTATTCAACTTATTCTTGCATTTCTTT TTCATCTAGATTTCAAATATAAATGAATAGTACAGAAGAAACTCCAGAAA AGAAGGAATATGAATGCCGTCTTTGTGGAAAGACTTTCACTGAAAAATTG TCATACGTAAAACACATGGGCTTATATAAGCTTCATAATTGTGAGGAGTG TGGAAAATGCTTTTCATCAAGACGTGTTTTGGCATTACACCAGGGATGTC ATGAACCAATGAAAAATCCCAAGTGTAAAGGAAAGAATGTTCTTTTCAAC TGTAATGAATGTGGTGCAAGCTTTGCAGGAAATGATTACTTGCAAAAACA TTTCTTGTAGAAACATCTCAAAATCGCCCATAAAGATGTGATTTGCAACT GTGGAGCTATATATACTAGAAAATATTACAGGGAAAAACATGTCTTTCAA TGTTCAAAAGcaagaaagaaatttaaatgCGCTAAATGTGGTGACTTGTT TGTAcagaaagttgattttgattCTCACACTAGATCTCACCATACCCAGA AGAAATATCAATGTACGAAATgtaacaaaatgtttttgaatcaaGTTGCT TTAGAGAATCATATGAAAGAAATCCATTCTGAGTTGGGCAGCCAATATAA GACAGTTGAATGTGCCGAAAATGatAAAAGAATGGTTAAAAAGAAGACAA GTGACAAAGAAGAAGCCAATGTTGATTTTCAATCATTATCTACAATATCT GATCATAATTATAGTGCACACCAACCAGATCACAACAATAAGACGGTAGC AAGATCACCTGCAATATACACCTATAATGGCAACAAATTGTTAAATAATA GAGCTAAAGAAATCAATTTAGCTGTAAAAAATAGATCAAGGATTTTCGCT CAACATCAAAAGACAAAAATCCTCCCCAAATTCAAAGAATCACACTCGGA CAATATCAACAAGACATCGATATCAAAAGGAACTGAAATAACAGTAATGG ATCTAGAcaaaacttcaatttttgatcaaaatgaaaGAATTGGACCCAAA GTGAAAAAATTACATTCAATAAATATCGAATTCCACAATAAGACACTGAC AGTTCATCTCCCAAACCAAAAGCTGCCCGTGCCAATATTGCTTCGAAAAA AGCCATCTTCAACTCAACAAAATGGACTGATTCCGCTTCCAAATCATAAA ACCTCTAACTTACAAAACAAATCTTCGCAAAAACCTCAATCTTTAACACC AGAGCCTCGGTCACACCAAAAACAAACACCCATCGCAACTCAACGAAGTC AACCGTTATCACAACCAGAGGCTACAGAAATAGGACCTTCACGAGAAAAT TATCCAGAAAAAACTTTATCAACAGAACCAGATTCACAAGAACAGCAGTT ACGTACATCAAATCAAAAGAATAAAACGATATCACAACCAACAAGCGACC CATTACAAACAAACAAAAGTGATGAACTTTCTTGTCTACAAAAACGACCA TCAACCCACAACGATAAACCGCTCGCTAAAGAAACTCAACACATCGCTAA CCCATTACAAAAACATCCCCAAGAGACTTCTCCAcacaaaaatgatgaac tttctTGTCTACAAAAACAACCATTAACCCATAACAATAAACCGCTACCT GAAGAAACTCAACACACCACTGACCCATTACAAACAAATCCCGAAAAGGC TCCTCCAaacaaaaatgatgaacttttagtGTTAAAGAAAAGGATAATAT CTCCTGAAAAACAGGAGATTATAAATTGCGAGGAATGTGGTGAAACGttt acaaaaatgaatttaTATTACCAACACATTGATAAGCACTTCAAAAAAGA CTGTCAAGTTCGCCGTAAACGTTTCTCCTCTGATATGAATATACAACCAA TTCCTACCAAGAAACGTCGAGATTTGAAATACAAATGCGCTAAATGTgac aaaatattcttttgggAAGCTTCGATAAAAGCACATTACAGAACACAGCA TAGTTTACCAGCTcgtaaaaagaaaatgtttcaaTGTAACCATTGCGAAC GTAAATTCACATCTgaaaaagggttaaaaattCATCGCCACTTGAAACAT AATAAGGCTAAAAAGCAGCAACGGCTTCAAAATAAAGTGCTTGAAACAGG TTCACAGCAGAAACAAGTCAATCTGGAGGAAAAGCAGGTGCAGGGTAAAA CGCTCGAAACAAGTTTCCATCTTCCGACGGAAGAGCAGCTTCAAAGTAAA ACGAAAATCAGCCCAATTGAAAGACTACAGTATCAAGTTAAAACGCTCGA AACAAGTTTTCAGCAAGAACAAGCCAACCTGACTGAAGAAACATCACAGG AATCTCAAGGTAAAACGATCGACACATGCTCTCAACTAGAACAAGTCAAC CCGACTGAAGATAACAGCCAACATTATCAAGGTGAAACACTCGAAACAAG TTTTCAACAAACGAAACCCAAGACAATTGATGAAATGAGACAACTATATC AAAGTAAACCGCATGGGAGTTTTTTCCGTCAACTTCAACCATGGCGATCA CATATTTATGTTCATCCCTTGAAAAAGTTTAAGTGTGATGAATGTGGTGA AGCATATTCAAAGAAGTTGGAACTAGATTCTCATATTATCAAAAAGCACA CAAAGAAGACCAAATCAAGAACTCGCTGTGAAATTTGTAAAAAGGATTTT GACACAGTACCTCAACTATCAATACATAAGCAAAAGGATCCTGACCATAT TGAAAAAGCAAGGAAAGAGGCTTTAGATATAGTGCGAATGTTTAATTTGA GTAAAAAGGAAGTCACATCGGACATCCCTTAGCACTCCAAGAACGTTGTA AACCATTTGTATATGAAtaattgtgaaaaattattttttttacataatgT ACAGTGGAGTTTCTATACATAAAACTCAAACACGCACTAGGAACtcaaat tttttcgagttatgAAAATATTGAGTTATGGAGCCTTACTCCTTATGAGa catttttaactgaagggaGCAAGCAGAAAACTCGTTCGAGTTACGAAGAC ATTCGAGTTGCAgtagttcgaattatggagactccactttaTTTACTTTA AAACATAGATTTATACCTTTATCAATTAGGTTCTGAGACTACATTTTAAT GTTAACCCTTAGACGCCGAAAGACGTGTATATGCGACCAAAATCGGTCAA AATACTAATCTTCCAAGACTTTGTGCAATAGATCTCCATAGAATGCATCC CATTggtttaaatcttttttttaacacAGTTGTGTTATCGAACTAGGGGC TGATGACTCAAATAATTTTAAGATTATATTTAAAGCTTGTCCTTATGTGA CAACGCGTCATGttatgttgatattttttatttcaataggaaaaactTTA CTTTATTTAGGTgactttgttgattttttttatgagctttcaagcacaat ttttttgattttacctTTCTTGGAGCTGGGGGCTATTTTCATCATCCCTC TCCTACCACCTAAAAATTTCTAGGACCTTGACCACTTTGCATTCTATATT CACCACTTGATTTTAAGAGACATAAACAGAAG Run BLAST on NCBI transcript from alignment at scaffold_376:106230..110696- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063027 ID=TCONS_00063027|Name=TCONS_00063027|organism=Clytia hemisphaerica|type=transcript|length=4467bp|location=Sequence derived from alignment at scaffold_376:106230..110696- (Clytia hemisphaerica) AAGGCCTTTAAACTTTACAATCCTTCATTAATTGACAAGATTTTTCAATC
AATGAACCTATTGCTTGATACTTTTCTCAAACAAAGAAAATTCTTTTGGG
GACACCCAAATATTGGGGGTACGTAATTACTTTGGAGACGTAACTGAACC
CTGGAGGAGCCTCGAGTGTGACAAGAACACCTTTATTCTAATTTTTTTCC
TTCAATATTATTGAACCCTTTTTTTATTCAACTTATTCTTGCATTTCTTT
TTCATCTAGATTTCAAATATAAATGAATAGTACAGAAGAAACTCCAGAAA
AGAAGGAATATGAATGCCGTCTTTGTGGAAAGACTTTCACTGAAAAATTG
TCATACGTAAAACACATGGGCTTATATAAGCTTCATAATTGTGAGGAGTG
TGGAAAATGCTTTTCATCAAGACGTGTTTTGGCATTACACCAGGGATGTC
ATGAACCAATGAAAAATCCCAAGTGTAAAGGAAAGAATGTTCTTTTCAAC
TGTAATGAATGTGGTGCAAGCTTTGCAGGAAATGATTACTTGCAAAAACA
TTTCTTGTAGAAACATCTCAAAATCGCCCATAAAGATGTGATTTGCAACT
GTGGAGCTATATATACTAGAAAATATTACAGGGAAAAACATGTCTTTCAA
TGTTCAAAAGCAAGAAAGAAATTTAAATGCGCTAAATGTGGTGACTTGTT
TGTACAGAAAGTTGATTTTGATTCTCACACTAGATCTCACCATACCCAGA
AGAAATATCAATGTACGAAATGTAACAAAATGTTTTTGAATCAAGTTGCT
TTAGAGAATCATATGAAAGAAATCCATTCTGAGTTGGGCAGCCAATATAA
GACAGTTGAATGTGCCGAAAATGGTAAGACATCTTAACTGAAAATTTGAG
CTGGAATTTTAATGACAAAATCAAAATGATATTTCTAAATCTAAGGGAAT
GGTATGTCTCAGAGTATTGGGTCAAGGGCTATCGTTTGCCATGGTTAGAT
TATCTAAAAAGCTTTTAATTAACGGGATAATGAGAAAAATTGGGAAATTT
GAAGGCCTTAGCAACCTGGTAGCATAAAAAAATGTGTAATGTATGAAAAC
TAAAATTCCACCAAAAAGAAATTGAAAGAAATTTTAACCCACGTATAGAG
GACGATTTTGAGGAATTGACTATATTCTAAAGAAACTTTTATTTTGTTCC
TGTTTCTTTTGATTTTTAGATAAAAGAATGGTTAAAAAGAAGACAAGTGA
CAAAGAAGAAGCCAATGTTGATTTTCAATCATTATCTACAATATCTGATC
ATAATTATAGTGCACACCAACCAGATCACAACAATAAGACGGTAGCAAGA
TCACCTGCAATATACACCTATAATGGCAACAAATTGTTAAATAATAGAGC
TAAAGAAATCAATTTAGCTGTAAAAAATAGATCAAGGATTTTCGCTCAAC
ATCAAAAGACAAAAATCCTCCCCAAATTCAAAGAATCACACTCGGACAAT
ATCAACAAGACATCGATATCAAAAGGAACTGAAATAACAGTAATGGATCT
AGACAAAACTTCAATTTTTGATCAAAATGAAAGAATTGGACCCAAAGTGA
AAAAATTACATTCAATAAATATCGAATTCCACAATAAGACACTGACAGTT
CATCTCCCAAACCAAAAGCTGCCCGTGCCAATATTGCTTCGAAAAAAGCC
ATCTTCAACTCAACAAAATGGACTGATTCCGCTTCCAAATCATAAAACCT
CTAACTTACAAAACAAATCTTCGCAAAAACCTCAATCTTTAACACCAGAG
CCTCGGTCACACCAAAAACAAACACCCATCGCAACTCAACGAAGTCAACC
GTTATCACAACCAGAGGCTACAGAAATAGGACCTTCACGAGAAAATTATC
CAGAAAAAACTTTATCAACAGAACCAGATTCACAAGAACAGCAGTTACGT
ACATCAAATCAAAAGAATAAAACGATATCACAACCAACAAGCGACCCATT
ACAAACAAATCCCAAAGAAACTTCTTCATATCAAAATAAGGAACTTTCTT
GTCTACAAAAACAACCATCAACCCACAACGATAAACCGCTCGCTAAAGAA
ACTCAACACAGCGCTAACCCATTACAAAAACATCCCCAAGAGACTTCTCC
ACACAAAAGTGATGAACTTTCTTGTCTACAAAAACGACCATCAACCCACA
ACGATAAACCGCTCGCTAAAGAAACTCAACACATCGCTAACCCATTACAA
AAACATCCCGAAGAGACTTCTCCACACAAAAATGATGAACTTTCTTGTCT
ACAAAAACAACCATCAACCCACAACGATAAACCGCTCGCTAAAGAAACTC
AACACACCGCTAACCCATTACAAAAACATCCCCAAGAGACTTCTCCACAC
AAAAATGATGAACTTTCTTGTCTACAAAAACAACCATTAACCCATAACAA
TAAACCGCTACCTGAAGAAACTCAACACACCACTGACCCATTACAAACAA
ATCCCGAAAAGGCTCCTCCAAACAAAAATGATGAACTTTTAGTGTTAAAG
AAAAGGATAATATCTCCTGAAAAACAGGAGATTATAAATTGCGAGGAATG
TGGTGAAACGTTTACAAAAATGAATTTATATTACCAACACATTGATAAGC
ACTTCAAAAAAGACTGTCAAGTTCGCCGTAAACGTTTCTCCTCTGATATG
AATATACAACCAATTCCTACCAAGAAACGTCGAGATTTGAAATACAAATG
CGCTAAATGTGACAAAATATTCTTTTGGGAAGCTTCGATAAAAGCACATT
ACAGAACACAGCATAGTTTACCAGCTCGTAAAAAGAAAATGTTTCAATGT
AACCATTGCGAACGTAAATTCACATCTGAAAAAGGGTTAAAAATTCATCG
CCACTTGAAACATAATAAGGCTAAAAAGCAGCAACGGCTTCAAAATAAAG
TGCTTGAAACAGGTTCACAGCAGAAACAAGTCAATCTGGAGGAAAAGCAG
GTGCAGGGTAAAACGCTCGAAACAAGTTTCCATCTTCCGACGGAAGAGCA
GCTTCAAAGTAAAACGAAAATCAGCCCAATTGAAAGACTACAGTATCAAG
TTAAAACGCTCGAAACAAGTTTTCAGCAAGAACAAGCCAACCTGACTGAA
GAAACATCACAGGAATCTCAAGGTAAAACGATCGACACATGTTTTCAGCA
AGAACAAGCCAAGCCGACTGAAGAAACACCACAGGAATCTCAAGGTAAAA
CAATCAACACATGCTCTCAACTAGAACAAGTCAACCCGACTGAAGATAAC
AGCCAACATTATCAAGGTGAAACACTCGAAACAAGTTTTCAACAAACGAA
ACCCAAGACAATTGATGAAATGAGACAACTATATCAAAGTAAACCGCATG
GGAGTTTTTTCCGTCAACTTCAACCATGGCGATCACATATTTATGTTCAT
CCCTTGAAAAAGTTTAAGTGTGATGAATGTGGTGAAGCATATTCAAAGAA
GTTGGAACTAGATTCTCATATTATCAAAAAGCACACAAAGAAGACCAAAT
CAAGAACTCGCTGTGAAATTTGTAAAAAGGATTTTGACACAGTACCTCAA
CTATCAATACATAAGCAAAAGGATCCTGACCATATTGAAAAAGCAAGGAA
AGAGGCTTTAGATATAGTGCGAATGTTTAATTTGAGTAAAAAGGAAGTCA
CATCGGACATCCCTTAGCACTCCAAGAACGTTGTAAACCATTTGTATATG
AATAATTGTGAAAAATTATTTTTTTTACATAATGTACAGTGGAGTTTCTA
TACATAAAACTCAAACACGCACTAGGAACTCAAATTTTTTCGAGTTATGA
AAATATTGAGTTATGGAGCCTTACTCCTTATGAGACATTTTTAACTGAAG
GGAGCAAGCAGAAAACTCGTTCGAGTTACGAAGACATTCGAGTTGCAGTA
GTTCGAATTATGGAGACTCCACTTTATTTACTTTAAAACATAGATTTATA
CCTTTATCAATTAGGTTCTGAGACTACATTTTAATGTTAACCCTTAGACG
CCGAAAGACGTGTATATGCGACCAAAATCGGTCAAAATACTAATCTTCCA
AGACTTTGTGCAATAGATCTCCATAGAATGCATCCCATTGGTTTAAATCT
TTTTTTTAACACAGTTGTGTTATCGAACTAGGGGCTGATGACTCAAATAA
TTTTAAGATTATATTTAAAGCTTGTCCTTATGTGACAACGCGTCATGTTA
TGTTGATATTTTTTATTTCAATAGGAAAAACTTTACTTTATTTAGGTGAC
TTTGTTGATTTTTTTTATGAGCTTTCAAGCACAATTTTTTTGATTTTACC
TTTCTTGGAGCTGGGGGCTATTTTCATCATCCCTCTCCTACCACCTAAAA
ATTTCTAGGACCTTGACCACTTTGCATTCTATATTCACCACTTGATTTTA
AGAGACATAAACAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00063027-exon-scaffold_376-1575043694:109824..110696 | TCONS_00063027-exon-scaffold_376-1575043694:109824..110696 | Clytia hemisphaerica | exon |
TCONS_00063027-exon-scaffold_376-1575043694:108689..109477 | TCONS_00063027-exon-scaffold_376-1575043694:108689..109477 | Clytia hemisphaerica | exon |
TCONS_00063027-exon-scaffold_376-1575043694:108443..108544 | TCONS_00063027-exon-scaffold_376-1575043694:108443..108544 | Clytia hemisphaerica | exon |
TCONS_00063027-exon-scaffold_376-1575043694:107509..108319 | TCONS_00063027-exon-scaffold_376-1575043694:107509..108319 | Clytia hemisphaerica | exon |
TCONS_00063027-exon-scaffold_376-1575043694:106230..107436 | TCONS_00063027-exon-scaffold_376-1575043694:106230..107436 | Clytia hemisphaerica | exon |
TCONS_00063027-exon-scaffold_376-1510915933:109824..110696 | TCONS_00063027-exon-scaffold_376-1510915933:109824..110696 | Clytia hemisphaerica | exon |
TCONS_00063027-exon-scaffold_376-1510915933:108689..109477 | TCONS_00063027-exon-scaffold_376-1510915933:108689..109477 | Clytia hemisphaerica | exon |
TCONS_00063027-exon-scaffold_376-1510915933:108443..108544 | TCONS_00063027-exon-scaffold_376-1510915933:108443..108544 | Clytia hemisphaerica | exon |
TCONS_00063027-exon-scaffold_376-1510915933:107509..108319 | TCONS_00063027-exon-scaffold_376-1510915933:107509..108319 | Clytia hemisphaerica | exon |
TCONS_00063027-exon-scaffold_376-1510915933:106230..107436 | TCONS_00063027-exon-scaffold_376-1510915933:106230..107436 | Clytia hemisphaerica | exon |
TCONS_00063027-exon-scaffold_376-1491911889:109824..110696 | TCONS_00063027-exon-scaffold_376-1491911889:109824..110696 | Clytia hemisphaerica | exon |
TCONS_00063027-exon-scaffold_376-1491911889:108689..109477 | TCONS_00063027-exon-scaffold_376-1491911889:108689..109477 | Clytia hemisphaerica | exon |
TCONS_00063027-exon-scaffold_376-1491911889:108443..108544 | TCONS_00063027-exon-scaffold_376-1491911889:108443..108544 | Clytia hemisphaerica | exon |
TCONS_00063027-exon-scaffold_376-1491911889:107509..108319 | TCONS_00063027-exon-scaffold_376-1491911889:107509..108319 | Clytia hemisphaerica | exon |
TCONS_00063027-exon-scaffold_376-1491911889:106230..107436 | TCONS_00063027-exon-scaffold_376-1491911889:106230..107436 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_376 | supercontig | scaffold_376:106230..110696 - |
Blast
BLAST of TCONS_00063027 vs. Swiss-Prot (Human)
Match: ZN175 (Zinc finger protein 175 OS=Homo sapiens GN=ZNF175 PE=1 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 3.581e-18 Identity = 67/207 (32.37%), Postives = 103/207 (49.76%), Query Frame = 3
Query: 225 YSTYSCI-SFSSRFQI*MNSTEETPEKKEYECRLCGKTFTEKLSYVKHMGLY---KLHNCEECGKCFSSRRVLALHQGCHEPMKNPKCKGKNVLFNCNECGASFAGNDYLQKHFL*KHLKIAHKDVICN-CGAIYTRKYYREKHVFQCSKARKKFKCAKCGDLFVQKVDFDSHTRSHHTQKKYQCTKCNKMFLNQVALENHMKEIHS 830
Y ++C SF S+ Q+ ++ T EK YEC CGKTFT+K H ++ + H C ECGK F+ + +L++HQ H K + C+ECG +F ++H + + K +C CG + + KH ++ R F C KCG FVQK + +H R+H +K Y+C C K F + L+ H + IH+
Sbjct: 475 YQCHNCGKSFISKSQLDIHHRIHTGEKP-YECSDCGKTFTQKSHLNIHQKIHTGERHHVCSECGKAFNQKSILSMHQRIHTGEKP---------YKCSECGKAFTSKSQFKEH---QRIHTGEKPYVCTECGKAFNGRSNFHKHQITHTRERP-FVCYKCGKAFVQKSELITHQRTHMGEKPYECLDCGKSFSKKPQLKVHQR-IHT 666 HSP 2 Score: 82.8037 bits (203), Expect = 6.590e-16 Identity = 58/181 (32.04%), Postives = 83/181 (45.86%), Query Frame = 3
Query: 300 KKEYECRLCGKTFTEKLSYVKHMGLY---KLHNCEECGKCFSSRRVLALHQGCHEPMKNPKCKGKNVLFNCNECGASFAGNDYLQKHFL*KHLKIAHKDVIC-NCGAIYTRKYYREKHVFQCSKARKKFKCAKCGDLFVQKVDFDSHTRSHHTQKKYQCTKCNKMFLNQVALENHMKEIHS 830
KK Y+C CGK F + LS +H + KL+ C ECGK FS L +HQ H + + C+ECG +F L H + + K +C CG + +K + H + K ++C CG F+ K D H R H +K Y+C+ C K F + L H K IH+
Sbjct: 360 KKPYKCHDCGKAFFQMLSLFRHQRTHSREKLYECSECGKGFSQNSTLIIHQKIHTGERQ---------YACSECGKAFTQKSTLSLH---QRIHSGQKSYVCIECGQAFIQKAHLIVHQ-RSHTGEKPYQCHNCGKSFISKSQLDIHHRIHTGEKPYECSDCGKTFTQKSHLNIHQK-IHT 526
The following BLAST results are available for this feature:
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