TCONS_00063018 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063018
Unique NameTCONS_00063018
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length959

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063018 ID=TCONS_00063018|Name=TCONS_00063018|organism=Clytia hemisphaerica|type=transcript|length=959bp
cttcgttgcgtcacagcaaaagGTAAACAaataaaactgaataaaaatga
CAGAAATTTCACAGAAGACTGGAGCATACAACGTACACGATACATTAAGA
CAAGGgTTTTCACATGCATTAAGTGGCACCATCAGTCATCATGCTGTcga
aaaatctgaaaagaatCATGCAGTGAACGCAGTGAAACAAGAATTGAAAT
CAGCTCGAACTACCCATGGTGTTCACATGGCAATGAAGTTACAAATGGAA
CGTAGTATCGTATCACAGGCACATCGAATGCCTGGATTACCCTGTTCATA
TCTCAGCCTACGAACTTTAACTGGAGAAAACGATCTGATTGGACCAGAGG
ATATTTTCAACGAGATCCCTGAAAATCTTGTGGATTATCGAATGTTGGGT
GAAGCCAAAATGGGATTTTGAAGGACGCTGTGTGTATAACGGATGTCGAT
GGCTGTGATTTTTCTACAGGAAAACTAACGAATTCAACCAAACTTTCTGT
AGTATTTATTATCGAGAGGTTATTATCATGGAAAGAGATATTCTATGAAA
CgttttaaaatgataaaaaatctgTTCAATTCTttaatatacacgttttt
ttttttataaggaacacgtttataaggaactcgaggctgaaaatggtcca
aaaaataaggaattgttaaggaaatgctcaggctgagaataagaaaacca
GTTTTAAGGAATTCAATTTTTGCGAATCCAAACTTAGCAGCTATGTAAAT
AAGGAACTcgataaggaactttgaggctgaaattctctgtaaaaataagg
aactccaggctcagagcaaagttaaggttccttataaaaaaaaaacgtgt
acacgtttttttttattagaacacctaaaatttggctgagcctggatgtg
cttattttttttaagcaattttcagcctaaaatgttcttaaatgcgttct
taatttttc
Run BLAST on NCBI

protein sequence of TCONS_00063018-protein

>TCONS_00063018-protein ID=TCONS_00063018-protein|Name=TCONS_00063018-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
MTEISQKTGAYNVHDTLRQGFSHALSGTISHHAVEKSEKNHAVNAVKQEL
KSARTTHGVHMAMKLQMERSIVSQAHRMPGLPCSYLSLRTLTGENDLIGP
EDIFNEIPENLVDYRMLGEAKMGF
Run BLAST on NCBI

transcript from alignment at scaffold_376:12194..25317-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063018 ID=TCONS_00063018|Name=TCONS_00063018|organism=Clytia hemisphaerica|type=transcript|length=13124bp|location=Sequence derived from alignment at scaffold_376:12194..25317- (Clytia hemisphaerica)
CTTCGTTGCGTCACAGCAAAAGGTTTGTTTTTATTTTAGTTTGTATCTTT
GAAAGACCCCATCGGCTTTAGGCATCGGCTTTAGGCAGTGGTGTCGGCTT
TAGGACCTCTCACGGTATCCACTGATGATTTGTGGCACTATGGTAAAGCT
AGATTCACTTTGCATACTCTTCGCTTGAGAAAATGATTGACAGATTAAAT
TTTTCACCCGCGCGGGCATTCTGCAAGCGTTCTGCAAGCGTTCTCGGCTC
AATCCTCGGACCATGTTAAAAATGGTAGACTCAGCTGTGACAGATCATTT
CGATGGAAGTTGTTGGAATGTTTACAAGATTCTTGACAGAAAATCCTTTG
TTTTATTGTCAATGATGATAGTGCCGTTATTAATTTTGTTAGATCTGATA
TATTGATGTTTGTAAGTGCACTTAAAACAGTGCGTCACAAAGAGCAATAT
TTCGATCGCACGTAAGCACTTCAAAACACCAGCTTTTTTCAAGTTTTGCC
TCATTTACCCAAATGCTTCAATCTTGCGTAGGCTTAGGGTCAAGACTAGA
ACCCCCAATAAGAGACATTCGCCAGACCGAAAAAAAATCATCATCGTCAA
TTTTTGTTAATTGTCAGAATCGTTTACTCACTGGAAATACACAACTTTTT
GAAGCTTCGTTTTTTTTCGGTTGTGCTTCATTTTAAAAATAACGAAGATG
AAAAGTTTACCATCAATCCCGCAAGTAAAAGAAGGTATTCCGACTAGTCT
ACAAAAAGTTCGCTCGCGCGGCGAATAGAATATCTCGCAATTTAATATAT
GCATAAAACTGACAAAATCCTTTCTTTTTTCAGTGTGGCTCGAATCTCTC
AGATCCTTGGTTAGAAAAAGCTATACCTGTTTACTTTTTTCTTGCCAGAT
TCAACAAGCCATCAACCAACAAAATTAATACTAACATCAAAAAATTCACA
CGACCTTTCCACTAGACACTTCTAAATTATCTGCCATTATGAACATGTTC
CGAAATTAACCAATCCGGTTTACAATCGGAATTCCTCTGGGAGTTAGCGA
GTCGGGAAATGTAAAGTTATGTAATAGGTAATACATAATTTTTCCGGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTGAAATGGTTT
GTTTTTTTCTTCATTATATATTTAAGTTTCCATTATCAAAATTCTAGAAA
TGCTAGTTTGTAGACCATATTAGAAAATGGTTATATATATCGCAAAATAA
ACACTTACAAAAGCTTTTACTTACTATTTTTACCTCCGCTTTTTAAACAG
CGTCTTCTCTGGGCGTGATATCAGGCGGAGACAAAACGCCCTCATCGTAA
GAAAAAATATTAGGGCCCGCCTAGAGCGCGGGCCCTAATATTTTTTCTCT
CGCGGTCTTCAGGGGAAAACGAAAGTGATCGATATTCTTCGAAGGAAGAA
TTTGCCAAACAAACCCCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCAAGCTAAAAAGGTT
ACAGGTTTTGGGCAATCGAGGCAAAAATCAGCAAAAAGCTGGTGTTTTCC
GTAAATCTGAGAATCGCGATAAGATCCTCACTGTTTTTATGCATGTGACG
TCACCATTGATCCTGACTTGACAATGGAGAACCAAATTTGGCAATGCATT
ATTATTACGAGTGGCCGAGAAAGTTGGTGTGACGCAAAAATTGTGCGATC
AACGCCCACTGAAAATTGAAACTAGAAATTTATTGAATATTTCACTGATG
AAGTATCGAACTTTTTGTTTTTTGTAATTATTATAAATTCATAGTTTTTA
AATAATATTTTTCGAGAGTCAAAGCACAATTAAAGTGAATTTAAGATGAT
TGGGTGGATACCGTGAGTGGTCCTAAATCCGACAGCCCTGCCTAATTCCG
ACACCCCAAATAACTGTTATGAAAAAAATTCTATGTTTACAAACATTCCT
TCTCCAAGTTGACACTTTGGTATCTTTATTGCGTCACAGCGAAAGGTTTG
TTTTTATTTTAGTTTGTTTCTTTGAAAGGCCCCATCGGATTTAGGCAGGG
CTGTCGGATTTAGGACCACTCACGGTATTGGGCGGACAGGCGTTTTGCAC
GTCCCGAGATGGGAAATTAGAGGAGAGTAAAAGATGGGGGCGTTTTAGTA
AGTAATATTAATTCATCATTTTGTTATTTCACGATTTCAAAATGAATGTT
TGATTTTTGAATTAAGAAAATGTAATGCAATATATTATATTTGATTGTCA
ATGCCAAAAGATATTTATTTACTTTACGAATAATCTGCTATGTTGCTTCG
CCACTTACCCCCGGATTGTTTTAGTAGGCACTTCGGTCACGTGAATAAAA
ACACGCGTATATGTTGAACCCGACTGTGGACTGAAAGAAATTGCAATTAC
ATAAATTATTGTGGAAGTGAGCGCTTGAGACGAATGTTTGGGGAATAAAA
AAGACAACTTTTGTAAGGGTGATGAGTTTTGTTTATATGGCACTTTGTGA
CGGACTGCTTAATAGTTTTGATTCCCATTGAAGAATCATATTCTGGTTTT
CATGTTATTAGATGCTATTTTAGAGCTTTAGAGCTAGCCTGCCAGGATTG
GCGTATTGGTGTGAGCTCAATAATTTTAACCTTCCTTGCCGTATCAAATC
TGTGAATTTCAGCGCTGGAATCGAGTTTTTGTCCAGTATATCTTCTTCTC
CTTTATCCGATTGTTTACACTAGGCTCTTCATCACTTGACTTCTACACAT
AGAAGCTTTGCTGTTTTGATAAAAAAAAATAGTGAAAGATCAAAGAAATT
TACCGTCAACTGCTCTAACTTGGGGCGATTGGTCGAAACATGGGACTGTT
GACAATCTGGCCTGTAAATTCACTTACTGTTAAATCTCTTTGACAACAAA
TTTGTTTTGATAACTCAACCAAGTTTAGCAATCATACTTTCTGCCATAAC
ATGTCACGATAACTTTCACTGATAACTTTTTGTTTTCATTCAAAATGACC
GGACGCCGATTGGAGAATTAGAAAACGCCCGCCGCCTAACCACCTATCAA
CCAAAGGTATTAACAAATAACGAGTGTGTAACTTGCCGTGCGAGTGATGT
CAAACGCTTCATCGTTTTGCCACTAATTTGGTCTTTTTCGTTCTAGACAT
TCGCGTGTGTTCCACCACTACCGATTTTTTTCATATTTCGATTTAAAAGC
CTACTCGGTGCGACAGAGAAATCGTGTATTTTTTAATACGCCATTCATTA
ACTCAAATCAAATGACTTTGAAGGTTCGGTGAAATGGTGACCGAATTGCC
GTCCCATGTTTTGTTAGATAGTCCTAAGTTAGAGTAGTTGACGGTATAAT
AGTCCAGAAGAAATTTACTGTTAACTTCAATTGCAATTGATAGCAAGTTA
TGGGGTTATCAGCTTTCAAAGTTTGTAAACATAAATGGCAGCTTTCATGA
GCTAAATCTTGGTTCCATTTTCATCTTTCCCTCAACTTGCCTTCCTCGAA
AATGAAGAAGAACTTTGCGGCATCACGATCATGGCATGGACCAGGGGTTT
AGGTACCCCCTGTGATTGGTACTCCCTGTGACTTGAGTATATGTCAAGAA
ATGAAAAAATTGTATATTTTTACAATTAAAAAGATTAATGATAGTTAGAT
AAAAGCAAGATATAAAATATAGTTCCCAAGCCCCCAGACCTTACTGCATA
AAAGTTAGATACCCCCAGCGATCATAGGTACCCCCTGAAATAAAAAAAAA
TCCAGCCCCAGCCTTTTTCAGGAAAATTTTGGTTGTAGCCCCCCCCCTGC
AGGCTGGGGGGGGGTTCATGCCATGACGATGGAGCGCATGTTGATGCACA
ATTTGATCATTATATAAATATTGGGGCGGTTGGCGTTTTTCAGAAACAGG
CGCTTTATAATTCTTCAATCGGCGTCGTTCAAAGGGCACGCTAGCAGTGT
AATTTCATTTATCATGGTCTCTGTTGCAGAAATGTTGGCTCTTTTTAGCT
ATTAAAATGCTGAGTTTATGGACACGAAAATAAGAGTGAGCTGGACTGAC
TAGGGACGGCAAAGCTCACTCCTGCAGTAACAAAAACAGGATTTAAAAAA
AAAAGGAAACGTTTTTTAGCACAAGTGTTTTTTCCAACTTCAACAGACTT
TATTCAGCTTTCTTTCAGAAAAAAAATTATCAAGATATGTCTTTTCGTTC
GTTCAAAATTTGAAAATGAGTAGGCGCAATTGCCTATCATTGCTTGATCG
ATTGTTCATTGATTCTAAGATGATTGATTGATCACAGTCGATAGCAAATG
ATAATCAATACAATATTTTAAAATAAGCTTGATTACCTATTGATTATATA
GCAATCAAGTGATATCCAATCAATCGATTGGTTATAGATAAGTCATCAAT
TGTTTCATGTGGGAAAGTCTTGGGGAACACCATGCTTGTCTTTAGAATAA
CTAAATTACTCCATCATAAATTTTGTAAATGATAAAGTCATTTAATTGAT
TTCTGCTTTTTACAACACACCTGTTAAAACCTGTTACCTATTGACATGAT
AATTTATCCCCTTTGTAACGCCCTTTGGCATAAGATTCCCATTTCTGCAC
TGCGGTACTGGCTGAGGGAATAATGTATGCTGGAGTAATTTTTTATTAAA
TAGACAATCTTGGAAATCCTCTTAATTGCGCTCGCAACTCCAGAGCAGAA
GCCGCAAATGTGTAAGGGGTAAAAGGGGGTAACACAGGGTAACACAGGGT
AACACAGGGTAATAAGGTAACAGGTTAAAAATTGTGGCTCTAAGGGGTTT
CCGTTTCACCTACAGTAATTATAAAACCTCATGAGAACGTGTAGAACACC
CGTTTGAAAGCTATTGAAGCTTGAATAGGGTGTCAATTTCTATCCTTTTG
TATCATAAGCATCAAATTAATAATTGACAAAAGCCGGAATTGATTAAAGA
AGCTTTATATTTTACCATCAGATCCGTCAGATCATCATTGTGTAAAAATA
AGTCATTTCATCAACATAAGGACAATAGAATATTTAAAATTCGAATTTCT
AAAACCAGATAAATTTATCAAGTTTTAATACTGCTATGAGTTCTTATTAA
TCTTCTTATCTTTCTTAGCATTTCGGGCTGACCTTCGAGCGCAGCTGGTT
TATTTTTCATTGCTTAAAATTCTTTTTTTCTTTTTTGTATGTATTTGTAA
ATTATTAAAAGCAATGAGCAAGATCTTTCTCAGGGAAGAAACATTTGCAG
TTAGGAACATCTGGTGAATTCTTGTACGTGGTGGCAATAAAAAAAAATCA
TAACGTCACTCATAAAAAAATTATGTTTGCGCTCTCTTTTACCGTTTTTT
GCCTAGACGATATAGCAAACAAAGTAAGTATAAATAAGCAGACTGTGTCT
TTAGTTGGCTGTAAAAAAATCCAGCAATAATAGAAATTTCTCCAACTTTC
GAAAACGATAGAACAAACTTATTTAAACAAAATTAACCAGAACACTTTTT
ATCCTTCTCCTTCTTTATCACCCTTAAAGCAGCAGGCCCCTTTATCTTTC
CGCAACTCCATCCATCATTTTAAATGAGTTAACAATAGATCCAAAAGGGT
ACCCTCATCAAGGAAGATAATTTGTTTAGGTCTCCGGCTTTGGGAAGTAG
TAATGTTTTTGGTTGTTTTTAATGGAAAATGGTAGCAAACTTCAGTTTAC
AAGTATCATTTTTTTGTAGTATTTTCTGGTTGATAGAATGGCAGGATCCT
GGATGGCTTCCCTTACTGACATGCATTTCCTTTCAAGACTTTTAAAGTTA
TGTAATGCTCTTTTCATATAAAAATGAGCCAAAATATGTGCGATTTGAGT
GGTTACACAAATAAAGTCACAAATAGTATTAACAGTCTTTTATTTTGAAT
AAGAGAGGTCAATTAAATGTATTTCTTGTGAGAAGTATGTAAATGATTTC
TTATTTTTTCAAGGAAAATGAACTACAATATTTTCTTGTTTATGGAATGG
AATTTAAACACTATCCTGTATTTTACAAGCAAAATTATGTATGTCTTGTA
TTTTTCAAATTAGCTGGCAGTGTTTTTTCAAACGTCCATAACTTTTGATA
GAATTCGAATTAAGTAGCGATTTTGTGCTCGTTGAAAAACAAACAGGAGT
GGGATATTGTCATAAAGAAAAAACTCAAAAACATCGGAAAATGAAGAAGA
AGAAAATCAACTTCTTTAATAATTGTGCAGAATTGTGCAATAATTATCAT
TTTCACACGAGTGATTCTTTGATCTTAGAACATCATTAATGCGAAAAAAA
ATTATTCCATCGAAAGATATAGTCCAAAGTTTATCAATGATTGACTTCAA
AAACCATCAAAAAACAATAAAAAAGAGCCCTTTTTTAAGTCAACCAGGGC
AAAGTTTTAGGGTGTATTTTTTGATTGAATGAATATTTTTAAATTTTTTT
TCTCGCATTTATGACGTCATAAGATTGAAGAATTCTTGATACAAAAATGA
AGATCATAGCATTATTCTACATTGATCATCTTCGTTTATATTCATTTTTT
AATTTTTTTTCTTTTTTGATAATATTCCACTCCGGATTATCTTTTCAACG
AGCACAAAATCGCTACTAAATTCAAATTCTATCAAAAGTTATTAAGGTTT
GAAAAAACATTGCCAGCTAATTTGAAATAGACTTTTTTAGTTTTTCAACA
AACTTGTATGCCCTTTGTGGTGCACTCTGTAAGTGAATAACATTGCTCAA
AATAACTTGTTTATAATAATACTCTCAAGATTTGCCACTTGAAGTTTTTA
TTCAATGCAGTTTGTCAAATCAGTTCAGAAAAATTCATCTTCGGAATCTT
CAATATTTCCTCCATAATGCTGGTAATGTAAAGGCTAAATCCTGTCTTTT
CTGTCTTTCCTTTCATGCGCCACTGTCTCATTCCCAGCTTGATTTTGTAC
TGCATATCTTGTCTCAATTTCTTCTTGGCATAATCTTGACTTTCAATAGA
ATTTCCGAATGGAGGGAGAACTGTTTCCCAATTTCGGCCTGCTTGATACA
CAGGAACAAAATTTAAGAATCGTTTGAATTTGTCCTTGTGTTTGACCAAG
ACATTGTTTCCATCAATTTGAAATCTCATTTTTCTTTTTCCAGCAAGATT
GTTAGCTATTCCTTTGTATGTTCCATTCAGCCCATGTTCTACCAACCGTA
ATGCTACTTTTAGAACTTCTTGTAGCTCTTCTTCAAAAGTTTTGATGCAT
TTACTGCCAACAAACTCCTCAATTTTGGGGTCGTGAAGATTCTGTATATT
ATAACAGATACCTGATGCCTTTTTTACCACAAGGACATTCATGGTCACAT
TCACCGGTATCATCCGATCTTACGAATGACCATCTTTTGGCAATATCCAA
GTTGGTCCAATGCTCTTTCTCTCTTTTAGAAGTTGGATCTCGATCTTACA
AAAATTTCATAAGCTTATCTGGATATTTTCCTGCACTCCCTCCTTCCGCC
ATGTTGACAACAAGAGAAATCTTTCATATATAGCTTCGTAGCATAAGTTA
TTTGAAATGACATGAAATTTCCTGGAAAAAAGAGGGAAAATGCCTTTGTT
TATACATTTTGTATCAGAACTTTTACATTTGCATTTGCTCATTTTTTTGC
ATGATACAATTCCAGATCGTTTTCTCTTCTTCAAAGATATGTGATTTTAA
TACTATGCCCTCGTACACCTGGCTTTAACTTCAGCCGTATAACTATTTTG
GTTTTGACAGTTTGTATGCTATTATATCACCGCCCGAACTATTTGACTTT
GTTACTTTTTTGCTTAACAACAAATTGCTAGAGAGCTAAAACCCTCGAGT
TTTGCTCTGGCAACTCGCCAATTAGTTTTGTAATTCTCTTGACAGGTAAA
CAAATAAAACTGAATAAAAATGACAGAAATTTCACAGAAGACTGGAGCAT
ACAACGTACACGATACATTAAGACAAGGGTAAGAAATCTGATCTACAATT
TTCCTTTTTCTGTGGCAGTGACTAAATTATTAGGCTAGGTTGATTTTCTT
GTAGGAAATTGAACATCCTTTAGCTACAAAAGATATGAATACAGTAAAAT
TTGTATGCTTTTTTGAGATGCAATAGCAAAACGAATATTCTATAGGTGCC
AATTTCCGCATACAAGCTTTATTTTAATTTTAAAAACATTTTTGGTATTA
ATTTTAAGACATGACATATTTCTTTTACAAAGATACATCTTTCACACTAG
ATTTATCTTAGTTTTGAGTCATTCTGCTTTCTCATGCACAACATTGCACA
TAATTCTGGCATAGTTTCGGACGACTTAGCGAAATTGCATGAAAATAAGT
ACACGTTTTTTATAAGAACAAACTAGACCATAAGGCTTCGATAGCCAAAA
TGTTAAGAACAAGTTAAGAACATTTTAAGGCTTCGCGGACTCAAAAACAG
CCAATTTCTTAGGAAAATGGACAAAAATACACTGAAAATACATGAAAAAT
GGGGGAAAATAAGGACATTTTAAGAACATCTTTAGGCTTAAAACTCAAAA
AGTTAAGAACATCTGAAGGTTTCAAAAATTTTGGATGTTCTTATAAAGAA
ACGTGTACACGCTAAAATCAGTACCTTCTCCTTGAAATGGTTTTTCTTCA
TCTTAATCAACTGCTTTTTGGATTTTTCTGTTTTTAGGTTTTCACATGCA
TTAAGTGGCACCATCAGTCATCATGCTGTCGAAAAATCTGAAAAGAATGT
AATTAATCAATTTTTACTTAAATGCTTTGAGTTGTAACTTAGGATTACAA
CAACATGATCACTTCCTAAACTGTCTATATTTAAAAGTGTTTGTAGAAGC
TTGCAGAAAACTTAGATTTCCCAAAATTTAAAAAACCCATACACTATTTT
TTTATAAGAATAACGAGGCTCAAAATCGCCAAAAATAACAACAATTTAAG
AATAATGCTGAGCCTAAAATTACTCCATTTCAAGCAATCAGGGGTCAAAG
TAGTAAAAATTGGGTATAACACCTAAAATACCTCAATTACACCCTATAAA
TAAGGACAGGATAAGAACTATTTAAGGCTCAAAGTGCAAAGAAATCTTAA
AAATTCTACTGGTTCTTATTAAAAAAAGTGTATGCGGTGTCGTCATTTCT
TTTCTGAAGCTAGCAGTTATTACATCTTCCTAGTACAAATTGTATCAACT
CTAAGTAAATTTTGACCATCGTTGCTTCTAATTTCAATTCTTTTAAAATT
CGACCGTAGCACTTAACGGTTAACATGATTTTCCTTTCTTCAATTGTAGC
ATGCAGTGAACGCAGTGAAACAAGAATTGAAATCAGCTCGAACTACCCAT
GGTGTTCACATGGCAATGAAGTTACAAATGGAACGTAGTATCGTATCACA
GGTATACTTTATTTTAAAAGCTTTTCATTTCTTCAGTGAATTCTTAATAA
TGGGCAATTTTTTTCGATACATTTTTGTATTTTTGTAAGCGCATGACTTT
TGACCTCCCTAGAAGTTTTGTCACTTAGGTTCTTCAGAAACATTTTATTT
TTCATGTTTATTTCTTAGGCACATCGAATGCCTGGATTACCCTGTTCATA
TCTCAGCCTACGAACTTTAACTGGAGAAAACGATCTGATTGGACCAGAGG
ATATTTTCAACGGTATAATCCATTTTTCGAGTATTTTTCTGGTAATTCCG
AAGCAATCATATCCATTGAGTTTGAAGCCCCAAAGTGGCTAAAGAGGAAT
CAACCTCAAATAAAAAATCCAAATTTTTATTTACACAACAAAACAATGGA
CTTATTATAAAAATCCTCTACAAGCAGCTACTCTATAATTTTTAAAGCAA
GAGGTGAAGAAATTCAATAGAAATAAACAAAGCATGAAGCGGTCACATAT
AAATTTTCTGCTTTAATCAGTGGCGTATCTAGGAATTTTGCCAAGTAGGT
CAAAGTTTTGAAGCCGAGTGGTTCAAGTCTGGTTCTTGGAAAGGCTATAT
TCCTTGCATCTCGCGTTTATCACTTTTTTAATTTAATCGCTATCTGAGTT
ATTCTACGCAAGATTCCACTTTTGTTTAGACGTAGTTTGTATCGCTTTCG
TATTTTGCAAATTATGAGAATTTTATTACTCAACTAATACCTTTGTCTCA
CGTTTTGACTACCTTTTTACGCTAATTAACCGCTTGTGGTAAAAAAATAG
ATACTGATGTGGAGCAGTCCGTTTCCCCATAACCAGCTATAACAAAAAAT
ATAGATGAGTTATAGATGAGTTTATAGGCCTTTATATCCCTAAAATTATT
TTTTATGTTTTGAATTGAATATGAGATAATTAAATGGTGTCAAATATTCT
AAGATATTCATTTTCGCTCATAACAACAATCAAAAAGCAGTTAAAAAACA
AAGTTTTAAAAGACTTTGAAAAATGCTTCATTTTTGCTAAAAAATAAACA
TTATTAGTTCAACTTAAAGAAGTGACAACTGGTGCTGATGCTTAATACCC
TGACGATTAGTTCTTAGCAATCGATCCACAAACATGGCTGGAACCCCCCC
CCCCTGGCCTGAGGGGGGGGGCTAAAAGGTCAAGCAGCAATTGGTACCTG
ATTTTAGCCTGTGGCTAGGGGGGACTAACCATGTTAGGGGTCACCTAAAT
TTTTTCAGATGGGGGCTAGATTCTAGATGTTTGGTGATTGAATTATAAGC
AGCCTACCAGACCATAGGTTGGCACTTTCTCGTCTTATATTTTAATCTAA
GCAATGCTCAAAAACTGACACTTTGGTATCTAATATATTATCTGCAGTGC
CGTAGCAACTGGGGGGGGGGGGGGGGGCTATGCCCCTAATAATTTTTTCA
AAAATGGTTATTTTGCAAAATGCAAAGTTTTTCTTTTTTAATTTGTCATA
ATTGTCTTATAAGTGCTTGTTTTGAGTGCATTTTCAAGCAATCTAGAGCT
CAAATTTTCAAGATTTCCCCCCTCGGGCCAAGCCATGGTTGGCCCTTGCG
GTGTCACTAAACTTCAGCCCCCCTAATATAAAAATGCTTCCTACGGCACT
GATCTGTAAAAAAATTTTAATCCTGTTGCATTTACTTAGATAAAATATCT
GTCTGGCAAGGGATTTGCACCCTGACTTACAAAACCCTGATAATCTGGCA
TGAACCTTCAGTACTTAGCTTATCTCTTATTTCTTAGGGCATTTATTCTA
TTTAGCAAAAAGCTAAACTAACTGCTGTATTTGTTTGATTGTTTAAAAAG
GATTTTCGAAAAAATTTGACGTGTCATTGGCTTAGGGGTCACCTAAAATA
TTTGGCAACCAGGGCTTACCTAAATCTTAGGGGTCACCTGAATTCTTAGG
GGGCACCTAAAACCTGCTGCCAAGCCATGCACAAAAATTAAAGCTATAAA
ATCACAGTTAAGACGTGAAGTCACTTGATTTTTCACAAAATTAGATAACT
ATGAAAAGTGAATTATAGCTATTACCCCGATTTTTTCAGAAATTTTGCTA
GGTCGTTTCAGCCATTTCTAGCTATGTCTCTCGGCTTTATATTATCTCTA
AATGAAAGGTGGCCAGAAATATAAGCAGTCATTGAAGGTCGTTACACGTG
AATTTTTAGTTAAATTGAGCTCGGTAATAATATGATCCCGATTTGTTAGG
GCGAAAGAGGGCAAAAAGGGTGTTGCTAAGCCACCCAAGCGGGGCGATAT
GGGTCGGGCGGTATTAGAAAGGTTTTCGCATTATCAAAATAAAAGCCTCT
AAATAGCGGCAGGTTCACTCGCAAAACATTAGGGAGGTAAAACTGCGGAG
ATAAATGTTGATCTAAGTTTTGCTGCACGCATAAGATTGATAAAGGCATC
CATGGCATCGAACTATGTCACTTGACCTACTTTACCTACCCTAAATACGC
CTCTGTTAATCACTTGTTTCTATGACAACGAAATAAAGCATGCTTTAATT
TTCCAGTGTGACCCCCCTGTTATTTTTATTTGTATTTACTTCTTTTTTTA
TCCTATTGCTATAGCGATGATCATTTATTTTGGCTTAACTTTGTTTAATG
CCTATTAAAATATGAGGTCATCCTTTCTTTGGTGTTGTGTTGATCATTCA
TTAAAAGAGTGAAAGTATTTTGCAAAGGTTTTTTCAACAAGTATTTTTTC
ACTTAGACAAACATCTGAGAGAAAAAAATATCTCTCTTCTATCGACGTCT
TCATTTTCATTTTATTTCGTTTTTTAGAGATCCCTGAAAATCTTGTGGAT
TATCGAATGTTGGGTGAAGCCAAAATGGGATTTTGAAGGACGCTGTGTGT
ATAACGGATGTCGATGGCTGTGATTTTTCTACAGGAAAACTAACGAATTC
AACCAAACTTTCTGTAGTATTTATTATCGAGAGGTTATTATCATGGAAAG
AGATATTCTATGAAACGTTTTAAAATGATAAAAAATCTGTTCAATTCTTT
AATATACACGTTTTTTTTTTTATAAGGAACACGTTTATAAGGAACTCGAG
GCTGAAAATGGTCCAAAAAATAAGGAATTGTTAAGGAAATGCTCAGGCTG
AGAATAAGAAAACCAGTTTTAAGGAATTCAATTTTTGCGAATCCAAACTT
AGCAGCTATGTAAATAAGGAACTCGATAAGGAACTTTGAGGCTGAAATTC
TCTGTAAAAATAAGGAACTCCAGGCTCAGAGCAAAGTTAAGGTTCCTTAT
AAAAAAAAAACGTGTACACGTTTTTTTTTATTAGAACACCTAAAATTTGG
CTGAGCCTGGATGTGCTTATTTTTTTTAAGCAATTTTCAGCCTAAAATGT
TCTTAAATGCGTTCTTAATTTTTC

Coding sequence (CDS) from alignment at scaffold_376:12194..25317-

>TCONS_00063018 ID=TCONS_00063018|Name=TCONS_00063018|organism=Clytia hemisphaerica|type=CDS|length=1875bp|location=Sequence derived from alignment at scaffold_376:12194..25317- (Clytia hemisphaerica)
AGATCCCTGAAAATCTTGTGGATTATCGAATGTTGGGTGAAGCCAAAATG
GGATTTTGAGCACATCGAATGCCTGGATTACCCTGTTCATATCTCAGCCT
ACGAACTTTAACTGGAGAAAACGATCTGATTGGACCAGAGGATATTTTCA
ACGCATGCAGTGAACGCAGTGAAACAAGAATTGAAATCAGCTCGAACTAC
CCATGGTGTTCACATGGCAATGAAGTTACAAATGGAACGTAGTATCGTAT
CACAGGTTTTCACATGCATTAAGTGGCACCATCAGTCATCATGCTGTCGA
AAAATCTGAAAAGAATATGACAGAAATTTCACAGAAGACTGGAGCATACA
ACGTACACGATACATTAAGACAAGGAGATCCCTGAAAATCTTGTGGATTA
TCGAATGTTGGGTGAAGCCAAAATGGGATTTTGAGCACATCGAATGCCTG
GATTACCCTGTTCATATCTCAGCCTACGAACTTTAACTGGAGAAAACGAT
CTGATTGGACCAGAGGATATTTTCAACGCATGCAGTGAACGCAGTGAAAC
AAGAATTGAAATCAGCTCGAACTACCCATGGTGTTCACATGGCAATGAAG
TTACAAATGGAACGTAGTATCGTATCACAGGTTTTCACATGCATTAAGTG
GCACCATCAGTCATCATGCTGTCGAAAAATCTGAAAAGAATATGACAGAA
ATTTCACAGAAGACTGGAGCATACAACGTACACGATACATTAAGACAAGG
AGATCCCTGAAAATCTTGTGGATTATCGAATGTTGGGTGAAGCCAAAATG
GGATTTTGAGCACATCGAATGCCTGGATTACCCTGTTCATATCTCAGCCT
ACGAACTTTAACTGGAGAAAACGATCTGATTGGACCAGAGGATATTTTCA
ACGCATGCAGTGAACGCAGTGAAACAAGAATTGAAATCAGCTCGAACTAC
CCATGGTGTTCACATGGCAATGAAGTTACAAATGGAACGTAGTATCGTAT
CACAGGTTTTCACATGCATTAAGTGGCACCATCAGTCATCATGCTGTCGA
AAAATCTGAAAAGAATATGACAGAAATTTCACAGAAGACTGGAGCATACA
ACGTACACGATACATTAAGACAAGGAGATCCCTGAAAATCTTGTGGATTA
TCGAATGTTGGGTGAAGCCAAAATGGGATTTTGAGCACATCGAATGCCTG
GATTACCCTGTTCATATCTCAGCCTACGAACTTTAACTGGAGAAAACGAT
CTGATTGGACCAGAGGATATTTTCAACGCATGCAGTGAACGCAGTGAAAC
AAGAATTGAAATCAGCTCGAACTACCCATGGTGTTCACATGGCAATGAAG
TTACAAATGGAACGTAGTATCGTATCACAGGTTTTCACATGCATTAAGTG
GCACCATCAGTCATCATGCTGTCGAAAAATCTGAAAAGAATATGACAGAA
ATTTCACAGAAGACTGGAGCATACAACGTACACGATACATTAAGACAAGG
AGATCCCTGAAAATCTTGTGGATTATCGAATGTTGGGTGAAGCCAAAATG
GGATTTTGAGCACATCGAATGCCTGGATTACCCTGTTCATATCTCAGCCT
ACGAACTTTAACTGGAGAAAACGATCTGATTGGACCAGAGGATATTTTCA
ACGCATGCAGTGAACGCAGTGAAACAAGAATTGAAATCAGCTCGAACTAC
CCATGGTGTTCACATGGCAATGAAGTTACAAATGGAACGTAGTATCGTAT
CACAGGTTTTCACATGCATTAAGTGGCACCATCAGTCATCATGCTGTCGA
AAAATCTGAAAAGAATATGACAGAAATTTCACAGAAGACTGGAGCATACA
ACGTACACGATACATTAAGACAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039478XLOC_039478Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063018-exon-scaffold_376-1575043694:25296..25317TCONS_00063018-exon-scaffold_376-1575043694:25296..25317Clytia hemisphaericaexon
TCONS_00063018-exon-scaffold_376-1575043694:17040..17122TCONS_00063018-exon-scaffold_376-1575043694:17040..17122Clytia hemisphaericaexon
TCONS_00063018-exon-scaffold_376-1575043694:16270..16330TCONS_00063018-exon-scaffold_376-1575043694:16270..16330Clytia hemisphaericaexon
TCONS_00063018-exon-scaffold_376-1575043694:15617..15718TCONS_00063018-exon-scaffold_376-1575043694:15617..15718Clytia hemisphaericaexon
TCONS_00063018-exon-scaffold_376-1575043694:15356..15449TCONS_00063018-exon-scaffold_376-1575043694:15356..15449Clytia hemisphaericaexon
TCONS_00063018-exon-scaffold_376-1575043694:12194..12790TCONS_00063018-exon-scaffold_376-1575043694:12194..12790Clytia hemisphaericaexon
TCONS_00063018-exon-scaffold_376-1510915933:25296..25317TCONS_00063018-exon-scaffold_376-1510915933:25296..25317Clytia hemisphaericaexon
TCONS_00063018-exon-scaffold_376-1510915933:17040..17122TCONS_00063018-exon-scaffold_376-1510915933:17040..17122Clytia hemisphaericaexon
TCONS_00063018-exon-scaffold_376-1510915933:16270..16330TCONS_00063018-exon-scaffold_376-1510915933:16270..16330Clytia hemisphaericaexon
TCONS_00063018-exon-scaffold_376-1510915933:15617..15718TCONS_00063018-exon-scaffold_376-1510915933:15617..15718Clytia hemisphaericaexon
TCONS_00063018-exon-scaffold_376-1510915933:15356..15449TCONS_00063018-exon-scaffold_376-1510915933:15356..15449Clytia hemisphaericaexon
TCONS_00063018-exon-scaffold_376-1510915933:12194..12790TCONS_00063018-exon-scaffold_376-1510915933:12194..12790Clytia hemisphaericaexon
TCONS_00063018-exon-scaffold_376-1491911889:25296..25317TCONS_00063018-exon-scaffold_376-1491911889:25296..25317Clytia hemisphaericaexon
TCONS_00063018-exon-scaffold_376-1491911889:17040..17122TCONS_00063018-exon-scaffold_376-1491911889:17040..17122Clytia hemisphaericaexon
TCONS_00063018-exon-scaffold_376-1491911889:16270..16330TCONS_00063018-exon-scaffold_376-1491911889:16270..16330Clytia hemisphaericaexon
TCONS_00063018-exon-scaffold_376-1491911889:15617..15718TCONS_00063018-exon-scaffold_376-1491911889:15617..15718Clytia hemisphaericaexon
TCONS_00063018-exon-scaffold_376-1491911889:15356..15449TCONS_00063018-exon-scaffold_376-1491911889:15356..15449Clytia hemisphaericaexon
TCONS_00063018-exon-scaffold_376-1491911889:12194..12790TCONS_00063018-exon-scaffold_376-1491911889:12194..12790Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063018-proteinTCONS_00063018-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_376supercontigscaffold_376:12194..25317 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
138.785	134.129	174.019	193.692	126.775	96.5922	177.403	186.032	262.949	194.654	209.467	200.374	115.669	119.364	144.532	146.072	210.473	204.331	99.5388	100.388	160.734	151.548	123.686	110.504	167.84	168.648	190.337	171.214	112.878	92.7285
Blast
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BLAST of TCONS_00063018 vs. Swiss-Prot (Human)
Match: POMP (Proteasome maturation protein OS=Homo sapiens GN=POMP PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 7.331e-19
Identity = 47/126 (37.30%), Postives = 67/126 (53.17%), Query Frame = 2 
Query:   41 IKMTEISQKTGAYNVHDTLRQGFSHALSGTISHHAVEKSEKNHAVNAVKQELKSARTTHGVHMAMKLQMERSIVSQAHRMPGLPCSYLSLRTLTGENDLIGPEDIFNEI--------PENLVDYRM 394
            I +TE+S  +G +  HD LR+GFS   +  +  H +E SEKN  +N  K    + R   G+   +KLQME   V Q  R+P L  S LSL  L G ++ IG EDI N+         P  +V+Y++
Sbjct:   14 IPVTELS-ASGPFESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQMEFKAVQQVQRLPFLSSSNLSLDVLRGNDETIGFEDILNDPSQSEVMGEPHLMVEYKL 138
The following BLAST results are available for this feature:
BLAST of TCONS_00063018 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
POMP7.331e-1937.30Proteasome maturation protein OS=Homo sapiens GN=P... [more]
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