TCONS_00063007 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063007
Unique NameTCONS_00063007
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length258

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063007 ID=TCONS_00063007|Name=TCONS_00063007|organism=Clytia hemisphaerica|type=transcript|length=258bp
ttcCTACTGTACCATCCATTCCTGCTGACCATCTAACAGACCACAATTAC
GCCATTGTCACataaaaagaacaaatcgataTTGAAATGGAGTATGCTGA
CGATATCGGGAAAGTAACTTCAGACTATCGCGCACTGCAAAAGTTTAAGC
AGACCGTCCCAACAGAACTAGAAAAACGAGATCTAGTAATAAATCAGGAC
AAAACGGAACAATTTACCATCACAAGAAATAACAACGAATGGAAAAAGTG
CAAATATC
Run BLAST on NCBI

transcript from alignment at scaffold_375:301134..301391

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063007 ID=TCONS_00063007|Name=TCONS_00063007|organism=Clytia hemisphaerica|type=transcript|length=258bp|location=Sequence derived from alignment at scaffold_375:301134..301391 (Clytia hemisphaerica)
GATATTTGCACTTTTTCCATTCGTTGTTATTTCTTGTGATGGTAAATTGT
TCCGTTTTGTCCTGATTTATTACTAGATCTCGTTTTTCTAGTTCTGTTGG
GACGGTCTGCTTAAACTTTTGCAGTGCGCGATAGTCTGAAGTTACTTTCC
CGATATCGTCAGCATACTCCATTTCAAtatcgatttgttctttttatGTG
ACAATGGCGTAATTGTGGTCTGTTAGATGGTCAGCAGGAATGGATGGTAC
AGTAGgaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039467XLOC_039467Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063007-exon-scaffold_375-1491911889:301134..301391TCONS_00063007-exon-scaffold_375-1491911889:301134..301391Clytia hemisphaericaexon
TCONS_00063007-exon-scaffold_375-1510915933:301134..301391TCONS_00063007-exon-scaffold_375-1510915933:301134..301391Clytia hemisphaericaexon
TCONS_00063007-exon-scaffold_375-1575043694:301134..301391TCONS_00063007-exon-scaffold_375-1575043694:301134..301391Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_375supercontigscaffold_375:301134..301391 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.03037	1.72943	7.02222	4.144	1.82538	0.72122	0.870121	0	2.57353	3.18982	3.18317	2.96302	2.94749	1.82326	1.15291	1.30529	2.03226	2.31461	2.37202	1.99251	2.41505	0	0.801307	1.10962	3.6332	11.498	3.00732	1.49398	1.05948	2.29602
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063007 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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