TCONS_00062969 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062969
Unique NameTCONS_00062969
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1198

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062969 ID=TCONS_00062969|Name=TCONS_00062969|organism=Clytia hemisphaerica|type=transcript|length=1198bp
TCAAGTGAGGACTACAATGTGGCTTGTATCCTTACCCTTCCTTCTTATCA
ACGAATGGGGTATGGGAAAGTGCTCATCGAATTCAGTTACGAGCTATCAA
AATTCGAAGGGAAGACGGGACATCCTGAAAAACCGTTATCAGACTTGGGA
CTGTTATCATACCGATCATATTGGTCACAAACCATCTTAGAAATCCTTCT
TCAATTGAAAAGTGAAGAAGGAACAAACCCTATAATAACTATAAAtgaaa
tATGTGAGATGACGAGTATACGAAAAGAAGATGTGATCTCCACACTCCAA
CATTTGAATTTATTACAGTATTATAAAGGACAATATGTGATCTGTATAAC
AAAGGAGATTCTTGAGTCACACTCAAAAGGAATGAAAAAACGCAAAATAA
GAATCGATCCTAAATGCTTGCATTGGCAACCGAAAGACTGGGCCAAACGT
GGTAAATGGTAAGGCTGACGAGTGAGAATGGTGATATTATTTGGTCAGTT
GATGGATTGAATTTAAGTAAaacacctctgtctcacagctccggtggaac
ttttttcctcagtggggattaAAACTTCTATCGAAATTCCaaaggggata
gaaattctattgtaccaaggtaaaaaaatccagtgggatggttttggagt
gcaatttagGGATGAAATGAAAGTCTATTCCCCAGTGGGCTGAAATTCCa
cggtattttcccaccggggacgacttttttgccaaattttccagtggggc
tggggtcccagcgggtctgtgagaaggtgtAGAAATGAGTCGAAGAAGTA
AAACAAAAGTAAATGATTTCATTACTTTACATTAATTTTAAGTAGCTCTA
GTAAATCTGAGCACAAGAGTGTTTCAAAATATCGAGAACGAAGGGTCCTT
ATCATATAGCACTATGAAAAGCTATGAAAATGCTTGTCCAAATTTCCGAC
TATATCCATTGTTAAGGCGAGCCATGACCCCAAAGACGTTTGTATACAAA
TCAGCAGTGAAGGCTTCATCATAACATTAGGTTCCTCTTCTAAGAGTACA
AGTACTTTATTATTTCTTTGCTTCCAGTGTTATCTTTAGAAAACATTTAT
ATTTTGCCCATCTGTACCTTATAATAGTATTTGAAATTGTATTTTGTAAA
TATATTAGATGATTCCTATTACGATTTAAAAACATTGTCAAATTTGTG
Run BLAST on NCBI

protein sequence of TCONS_00062969-protein

>TCONS_00062969-protein ID=TCONS_00062969-protein|Name=TCONS_00062969-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
SSEDYNVACILTLPSYQRMGYGKVLIEFSYELSKFEGKTGHPEKPLSDLG
LLSYRSYWSQTILEILLQLKSEEGTNPIITINEICEMTSIRKEDVISTLQ
HLNLLQYYKGQYVICITKEILESHSKGMKKRKIRIDPKCLHWQPKDWAKR
GKW
Run BLAST on NCBI

transcript from alignment at scaffold_375:352371..361852+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062969 ID=TCONS_00062969|Name=TCONS_00062969|organism=Clytia hemisphaerica|type=transcript|length=9482bp|location=Sequence derived from alignment at scaffold_375:352371..361852+ (Clytia hemisphaerica)
TCAAGTGAGGACTACAATGTGGCTTGTATCCTTACCCTTCCTTCTTATCA
ACGAATGGGGTATGGGAAAGTGCTCATCGAATTCAGTAAGTTTCGTGTTA
CTGTCTGAAGCTTGTTTCTTATCATCGTAATTGTTATATTTTTGGTATTA
CGCgtttttataaggaactttaACTTGGCTCGGAGTCTTATTTTTTCCTG
AGAATCTCAGCCTCAAAACTCCTCCTTATTTACTTAACTGCTAAGACATT
GATTGAATGTTGTTTCGTTgatattttatcatatttttgtaTAGGTGTTT
GTAAATGTGTGCAAGTTTAAATTTAGCCCTTACCGttctttaacttgatt
tttggacctacctcggaggttctttaaattaaccgatgttcgtccgtttg
tctgttaccagttttttttcatcattatttttttctattttttttttttg
ctcaaagatgcgtattagcaatgttcaaaacatggccgagtccgattttt
gagaattttttttttccggccgaaaatgccggaaatatgccggaactGGC
TTTTATTGGActtttttctaatatttctttgtttttttcgcaCAAAAACA
TAATTGATAACAATACCCACCaccaagcatgattcaattgtcaataaaac
tgatttttgcaaccgaaactttctatttcttttttcactgCTCCTGTTCC
CTCTCCCCCCGCTCCCCCCGCTCCCCCCTTTCCCATCAACaataaatgat
gaaatttaatgcgttatggaTTTTTGCTAAACggtatattttctgactga
atattttcatttttctccttattgctttTGCTTGATGTAATAATCATTTT
CTTAGCATCATTCTATCGAAAGTAGCGAGCCTTTAGTTTTATACTTTTAT
ATCTTTACTTTGATTTTCCGTTTGTTTTCATGGTCATCCATCATTGGCCA
TTTTATTTCTAGAAGTTATGTGTGTGAAAATCAGTTTTTCTAACTCAGAC
GAATTAGTCtgtcttttttaatttgaatttttttgactatttttagtaaa
tgttggatttgataaaaaaagtgaaaactaaaaatttaattttattcatt
gtttgacgtttcggtgtcttctttgcaccatgatcacaagtatagtaaaa
aaaattcaaaacgaatttcaatttacaacattaaaaaaaaaatcacaaaa
ttaaaaaattactaccaGGTTGTTAAATTTCACAAAGGAACGCATACATC
CTAAAAGAGCTCAAGGGGGAATGAAGagtttttttgagtttcaacCCGTC
ACTTAGGATCAAGTCGTCAAAGAGATAAAGAATCTTCGAAGTGACTGCTC
TGCCGGGTATGACAATCTACCAGTATCGCTGATCAAACCTATCGCCGACC
ATCTAGCGTCACCACTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTCAAACCACTTTCCATCAGC
AATGGAAAATCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAAA
CTGAACAGTCCGTCACTCCTGACCAATTCAGACCCGTCACTGTTTTGCCT
ATCTTATCAAAACTTTACGAACGTTTAATGGCAAAGCAGATCGTCAAGTA
CATCGAAAGAAACCAGATATATCAACAAACCATGTCTGGTTTCCGTAAGC
GTCATTCTACCGAAACGCTCCTAATGAAGATACGAGACGACATCATTGGT
GCGATGAACAAAAGCGAAGTCACACTAGCCGCCTTTCTTGATTATTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGA
ACACTGTAAGACAGTAAACCTCCCAGCTTCAATCGTCAACTTAACACATC
GTTTAAACCAACTTAGAGAATGGTCAAGCACTAATAATCTGGCgttaaac
aacaaaaaaaccaaAATCATGCTACTGTCAACACTGAGAATGTCAAACCT
TCACGATTTCATGAACCCCGATCACGCAACCTTTCGTATCTATCACACAG
ACCAACTGATAGAACGATTTATCGTTTATAAACTTCTTGGCATCCAATTC
GATCAAAATCTAAATTGGCAAACTTATATCGATAAACTCGGTCAATGCGG
AAACAACTGGCCGAAGCCCTTCTTATATCGAAGTTACACTACTGTTGTTC
ATTGTTCTGGAACCTGCCACAAATCCAGTTGAAAAAACTTGATAAACTGC
TATGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNact
agggttggtgaatgaggggtatgtgcggacaggacctccgaaaaccgacc
cttagagagaccaaattttagtgaaaaggtgacccttagagagacttttt
cgaaaaattttctgtgattttcaaaaattccctacccttagtgagacttt
tttgtaattttctctctcaaaatcaaattttttttccagaaatcgtgatt
tttcccacccttagagagactactttgaaatttcctgatttttgtaaccc
ttagagagactttgaaaggtgaaaaacccgacccttaccgNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACGAGACT
AATGTATCGGAAAAATTATTTGTTGGCAAGGCAAGTCGCCTTTTGAATGA
TATTCCAAAAGCGATCAGGGAAGAACCTGATCACAAAAAAATTcgcaata
tttaaaaaaagtatttattagATCGTAGTCTGGCAATATTTTATACACAT
TATATCTAATTTTTTATTGTAGATTCTATGATCATGAGGTCTAGTGGTTA
TATTATTAATATTTACCTTACAatatttacttgatattttagtCTGGTGG
TCTGATCAACACTGAAATTTTCGCAGGATTAGCCACTCAATACTACTACA
ACTCAACcgaacttttcctaatttaacCACTACAACACCAACAAGCTATA
CTTTCTGTTTTATAATCTGTAATTTTGTAAGCTCTGTCAGTATTCTtgag
ttgttgtttttttgtgtgttttgtttctacagcatatttttttcatagaa
tataattatctttttatttaaatatgattatttttacataCGACGAATAG
CCTTTGTAAAATATGGAAGAGCCTGAAAGaccattaataaaaaaaaaaaa
ataaaaaaaaatgaagagacATGCTCATTCAATCCAACAGTTCAATGTTG
GATTCTTAAGATTAACCTACTCTAATAAGACATAGCATATTTGATTCATA
TTGGCATTTCAGATAGCATTTGAGTTGGTAATATTTTGCTTTGTCTTCAT
TTTCAGGTTACGAGCTATCAAAATTCGAAGGGAAGACGGGACATCCTGAA
AAACCGTTATCAGACTTGGGACTGTTATCATACCGATCATATTGGTCACA
AACCATCTTAGAAATCCTTCTTCAATTGAAAAGTGAAGAAGGAACAAACC
CTATAATAACTATAAAGTAAGAATTTTCTTCCAATAAGATGTTGTTTAGA
TAACATACTTTTGTGGGGTTCTTTTGATAATTAGGTAGAAATAGGCTACG
TTACAtattccttcgtttcgagcgtaaaactcctactcttcgggatatgc
gcactgctcttcttttgaaaagtgatttttttaaatttacatTGCATGCG
CACTAACGTTTTATTGAAACAATATAGTGTTTATTCGGAGCCTTACCCAA
TCAGCcatgttttaaatattctttcattTGATATCAGGGGGTACATTCGC
AAGGTACTAACCCTGATTATCAGACAAATTTGTCTTTGGTACTATCCTCT
TTTTAGTACCTGGTGTTAACTTTTTCTgaggaaaaaaagggaaaacacAC
CCTCCCCCAATCCCAATTCCCCAATCAGATACTGGTTACCGAGGAAAATA
ATGGCTACATAACCTTGTTATACATAGCAGTCAATTTCACCTCACCAAAG
TGTCGGAAGTTCTCAAAATCTGGAAATTCATTTCTGGCAattcgattttt
caaaattatttaaaaaaatatgaaaatcaaaaaatatgtcCCTTAAATGA
AATCTGTTTTTCGTCtggaaatttttcggaaaattgacaaaattcttttc
tgATTTGCCAAAATTGATCATTAACCCATTTTATCCATTTTACCAAAGAT
TAGTGTACCAGGTCAGGGACtctttggacctaccccggtggaggtcctat
aaatccgtccgtccgttcgttaccaacttttctcgagattggctcattag
tttttttctgattttttgcacaaagatgtgtaactcgaatgtgacagagc
ccgattttcaaaaaaaaaattttgggcaaatttgggccaaaaaacgccta
aaaaacgggttttttggactttgtgaaaaattggatcattaattttttct
gattttttgcatgaaagtagggtaccatcatagataaaagatggctcaag
cagattcttgcaaaaaaatttagttggctcaaaaaacgcaagtttattta
taagaatcactattaataagcatacatcaatgttcttagtcaaattactt
aatttttttatgagatagatgttttttttgctcatgagggcttacttttg
aaaaatatgtgtgtttagacatgaaactttagttgcttggcgtgttttta
tagaaaaactggccaagttcgatatttttttataagcacatcatcaatta
cttaggtattagcttttctcgagattggctctttcattctttatgatttt
tttcaaatgtgacggagctcgattgggctcttccagaaaaaatttttaca
tggggggtggaggatatattgtccgggggtgtaaatttaaatttggtgTG
CCTGGGGGTAATTTGGTGTGTCCGGGGGGTCggcagatgcttgtccgggg
gtaaaacctattgtccggggggccaaaagtcaccctgtccggggggtaaa
tcactaaaaattgttatatcctccacccaacaaaattgatttcaatgttt
tttttcttacttttttttcatcgaacgttttaattgcattcgaaatttat
tttgtgagaaagaaaatcaataaacaacaataaatgaaagacataaagag
aagagaaaaatatgtAACTCTCaatgtaatttctgtaattttctttccta
actgggaaaaagtagtgaaagccatcgtgcgattagctcgtaatcacata
ataactcgtacaattcgaaaattgcaattatattcgaattgcactcgtta
ttaTGTGATATGCATTACCAGGTAGTTCCataaagtatcacttgtttaat
aTGTCCGTATAacggccaaaatactcaatctAAGATTGAGTTTTTGAAAC
ACAGGACCCCCAGCTACATCAATGTACAGCTTTGCTGAGAACGTTCCCTT
TCAGGCATATTAAAAATTCAAAGTCCCAGATCGTGTCTTATCTTTTAGTT
ACAAGTTACTAAGTTACAATGAATAAAGAGAATGACTTCAGATTTATTAT
ACTAGAGTGAAAAAATATTAGTTTGAATAAAATATAACAGTGTTCTTAAG
TTTTCCTTACCATATCCTATCTTGAAATAAGTCGCCTAACATGCTAGACA
AATAAtatagaaaagtaaaaatatctCAGAACTAAATGTCAATgtgaata
aaaatttaattagctttttttcTTGGTGAAATTCCGGTTTTGCTTAGCTC
TTTGGACAaacttttgatttcaatttcaattttgacgggATTAATGATGC
GGGGTGGATCAATATCATCAAAGATATCAATCAAATCACCCCCTTGCTTT
TTTCTTTCCTCCACTTTTTTCTGTATTTCGTCTATATGAGCCTGAGTTGT
TAAAACCCACTCAGTAGGGACAGGTAGTTTCAACTTAGATATCTCATCTT
TTGGTACTGCTTCCCCATATTTTTCTCGTATTTCGTTCTCTTTGTCAAAG
AAAGATGTTGTGTCTACACATCCGATCGGAAAAAGAtttaaaacttttgg
ttttggttCGAAATCCTTTTTAGATTCTTTTATAATCCGTTGTTCAACCT
GCTCCATCCGgttatttgtttctttttttaccGATCGATGGGTAAATCCA
ACTTTCACCAACCTAGTTTTCACATTTTCCCCATAGGGAGAGGTCAACCC
ATGTTCATTATTCAAAACGATCGCATAAATAACAGGGCCCTTATTTTCTC
TGCGGATACGGTCTTCTATCTCCTTTTTCTGAGCATACTTGTTCAGCTCC
TTGATCAATTCGCTACCATTAGAACCTTCCCAAAATTTTCGTTTGAAATC
ATCTAAGTTATCGATTTCTTTAAAATCCAACGATGCCATATTACGTAGTG
TTTGTCCTTCTGTCCAGTTCTAAATGTCAGAATCTATCACTACCAGATTT
CCCTCTTTTAAAGTCAATGTTTTCTATTTACTGTCAATTTTGTTGCCAGC
TGTTAATATAAGTAATGAACAGTCAATGCAAAATATTGACTGTTAATATT
GACGTTCATTATATTCTATTAgctttcaagaaaatgttttataaATTGCT
GCGTTAAATCTATAAGAAATCTTTTTAACTGTCTTATTCGTTTTCAAATT
AATAGGTCCATTAATTTCTATAAAACTTTTCACTTGTCTCAGCTCatctt
ttcttaaatttcttaaatagtctttctttgatttttcttagCTTTGAAAA
CTAATCTGTAAAGTCTAGAAGTATTTTCGGAGTATCCATATAAAAGTATT
AATCCATACTCAAATCATAATATCCTCGAAGTATTAATAAACCACTGATG
TCCTTAAGCAAAATAGACACAAATCGAGTATTTCTTTGAGTCATCGGTAA
AAAATTATGGGCCCCTTCTAGTGCCACAATTGGGCTTCTAAATAATGTAG
TTGAGTCTAATACAATGCGCGCGTTCAACTGATTTATCATCGATGGTTTT
ATTATATCCGCAgatgcaaaaacaaaacataagtCATATAAATAGTCGAA
ATAATTAACCCAGGGCAGATGCAgatgcaaaaacaaaacataagtCATAT
AAATAGTCGAAATAATTAACCCATGGCTGGCAGGACATGCCACAAAATGA
CTCATACTTtcaatctgtttttttttcagtgaaatATGTGAGATGACGAG
TATACGAAAAGAAGATGTGATCTCCACACTCCAACATTTGAATTTATTAC
AGTATTATAAAGGACAATATGTGATCTGTATAACAAAGGAGATTCTTGAG
TCACACTCAAAAGGAATGAAAAAACGCAAAATAAGAATCGATCCTAAATG
CTTGCATTGGCAACCGAAAGACTGGGCCAAACGTGGTAAATGGTAAGGCT
GACGAGTGAGAATGGTGATATTATTTGGTCAGTTGATGGATTGAATTTAA
GTAAaacacctctgtctcacagctccggtggaacttttttcctcagtggg
gattaAAACTTCTATCGAAATTCCaaaggggatagaaattctattgtacc
aaggtaaaaaaatccagtgggatggttttggagtgcaatttagGGATGAA
ATGAAAGTCTATTCCCCAGTGGGCTGAAATTCCacggtattttcccaccg
gggacgacttttttgccaaattttccagtggggctggggtcccagcgggt
ctgtgagaaggtgtAGAAATGAGTCGAAGAAGTAAAACAAAAGTAAATGA
TTTCATTACTTTACATTAATTTTAAGTAGCTCTAGTAAATCTGAGCACAA
GAGTGTTTCAAAATATCGAGAACGAAGGGTCCTTATCATATAGCACTATG
AAAAGCTATGAAAATGCTTGTCCAAATTTCCGACTATATCCATTGTTAAG
GCGAGCCATGACCCCAAAGACGTTTGTATACAAATCAGCAGTGAAGGCTT
CATCATAACATTAGGTTCCTCTTCTAAGAGTACAAGTACTTTATTATTTC
TTTGCTTCCAGTGTTATCTTTAGAAAACATTTATATTTTGCCCATCTGTA
CCTTATAATAGTATTTGAAATTGTATTTTGTAAATATATTAGATGATTCC
TATTACGATTTAAAAACATTGTCAAATTTGTG

Coding sequence (CDS) from alignment at scaffold_375:352371..361852+

>TCONS_00062969 ID=TCONS_00062969|Name=TCONS_00062969|organism=Clytia hemisphaerica|type=CDS|length=1386bp|location=Sequence derived from alignment at scaffold_375:352371..361852+ (Clytia hemisphaerica)
TCAAGTGAGGACTACAATGTGGCTTGTATCCTTACCCTTCCTTCTTATCA
ACGAATGGGGTATGGGAAAGTGCTCATCGAATTCAGTTACGAGCTATCAA
AATTCGAAGGGAAGACGGGACATCCTGAAAAACCGTTATCAGACTTGGGA
CTGTTATCATACCGATCATATTGGTCACAAACCATCTTAGAAATCCTTCT
TCAATTGAAAAGTGAAGAAGGAACAAACCCTATAATAACTATAAAtgaaa
tATGTGAGATGACGAGTATACGAAAAGAAGATGTGATCTCCACACTCCAA
CATTTGAATTTATTACAGTATTATAAAGGACAATATGTGATCTGTATAAC
AAAGGAGATTCTTGAGTCACACTCAAAAGGAATGAAAAAACGCAAAATAA
GAATCGATCCTAAATGCTTGCATTGGCAACCGAAAGACTGGGCCAAACGT
GGTAAATGGTAATCAAGTGAGGACTACAATGTGGCTTGTATCCTTACCCT
TCCTTCTTATCAACGAATGGGGTATGGGAAAGTGCTCATCGAATTCAGTT
ACGAGCTATCAAAATTCGAAGGGAAGACGGGACATCCTGAAAAACCGTTA
TCAGACTTGGGACTGTTATCATACCGATCATATTGGTCACAAACCATCTT
AGAAATCCTTCTTCAATTGAAAAGTGAAGAAGGAACAAACCCTATAATAA
CTATAAAtgaaatATGTGAGATGACGAGTATACGAAAAGAAGATGTGATC
TCCACACTCCAACATTTGAATTTATTACAGTATTATAAAGGACAATATGT
GATCTGTATAACAAAGGAGATTCTTGAGTCACACTCAAAAGGAATGAAAA
AACGCAAAATAAGAATCGATCCTAAATGCTTGCATTGGCAACCGAAAGAC
TGGGCCAAACGTGGTAAATGGTAATCAAGTGAGGACTACAATGTGGCTTG
TATCCTTACCCTTCCTTCTTATCAACGAATGGGGTATGGGAAAGTGCTCA
TCGAATTCAGTTACGAGCTATCAAAATTCGAAGGGAAGACGGGACATCCT
GAAAAACCGTTATCAGACTTGGGACTGTTATCATACCGATCATATTGGTC
ACAAACCATCTTAGAAATCCTTCTTCAATTGAAAAGTGAAGAAGGAACAA
ACCCTATAATAACTATAAAtgaaatATGTGAGATGACGAGTATACGAAAA
GAAGATGTGATCTCCACACTCCAACATTTGAATTTATTACAGTATTATAA
AGGACAATATGTGATCTGTATAACAAAGGAGATTCTTGAGTCACACTCAA
AAGGAATGAAAAAACGCAAAATAAGAATCGATCCTAAATGCTTGCATTGG
CAACCGAAAGACTGGGCCAAACGTGGTAAATGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039440XLOC_039440Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062969-proteinTCONS_00062969-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062969-exon-scaffold_375-1491911889:352371..352455TCONS_00062969-exon-scaffold_375-1491911889:352371..352455Clytia hemisphaericaexon
TCONS_00062969-exon-scaffold_375-1510915933:352371..352455TCONS_00062969-exon-scaffold_375-1510915933:352371..352455Clytia hemisphaericaexon
TCONS_00062969-exon-scaffold_375-1575043694:352371..352455TCONS_00062969-exon-scaffold_375-1575043694:352371..352455Clytia hemisphaericaexon
TCONS_00062969-exon-scaffold_375-1491911889:357077..357236TCONS_00062969-exon-scaffold_375-1491911889:357077..357236Clytia hemisphaericaexon
TCONS_00062969-exon-scaffold_375-1510915933:357077..357236TCONS_00062969-exon-scaffold_375-1510915933:357077..357236Clytia hemisphaericaexon
TCONS_00062969-exon-scaffold_375-1575043694:357077..357236TCONS_00062969-exon-scaffold_375-1575043694:357077..357236Clytia hemisphaericaexon
TCONS_00062969-exon-scaffold_375-1491911889:360900..361852TCONS_00062969-exon-scaffold_375-1491911889:360900..361852Clytia hemisphaericaexon
TCONS_00062969-exon-scaffold_375-1510915933:360900..361852TCONS_00062969-exon-scaffold_375-1510915933:360900..361852Clytia hemisphaericaexon
TCONS_00062969-exon-scaffold_375-1575043694:360900..361852TCONS_00062969-exon-scaffold_375-1575043694:360900..361852Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_375supercontigscaffold_375:352371..361852 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.648	11.4423	5.28814	5.82233	23.2317	17.345	13.4495	14.9056	7.55934	8.02	9.2446	8.62367	6.76116	8.98037	9.05343	10.441	7.1391	8.91388	9.06878	7.12434	6.18862	7.24454	11.455	11.2046	16.8085	17.0505	5.5731	6.41743	5.54201	6.24712
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002717HAT_MYST-type
IPR016181Acyl_CoA_acyltransferase
Vocabulary: Molecular Function
TermDefinition
GO:0016747transferase activity, transferring acyl groups other than amino-acyl groups
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Blast
[Close]
BLAST of TCONS_00062969 vs. Swiss-Prot (Human)
Match: KAT5 (Histone acetyltransferase KAT5 OS=Homo sapiens GN=KAT5 PE=1 SV=2)

HSP 1 Score: 243.432 bits (620), Expect = 2.555e-74
Identity = 115/153 (75.16%), Postives = 134/153 (87.58%), Query Frame = 1 
Query:    1 SSEDYNVACILTLPSYQRMGYGKVLIEFSYELSKFEGKTGHPEKPLSDLGLLSYRSYWSQTILEILLQLKSEEGTNPIITINEICEMTSIRKEDVISTLQHLNLLQYYKGQYVICITKEILESHSKGMKKRKIRIDPKCLHWQPKDWAKRGKW 459
            S+EDYNVACILTLP YQR GYGK+LIEFSYELSK EGKTG PEKPLSDLGLLSYRSYWSQTILEIL+ LKSE G  P ITINEI E+TSI+KEDVISTLQ+LNL+ YYKGQY++ ++++I++ H + M KR +RID KCLH+ PKDW+KRGKW
Sbjct:  361 STEDYNVACILTLPPYQRRGYGKLLIEFSYELSKVEGKTGTPEKPLSDLGLLSYRSYWSQTILEILMGLKSESGERPQITINEISEITSIKKEDVISTLQYLNLINYYKGQYILTLSEDIVDGHERAMLKRLLRIDSKCLHFTPKDWSKRGKW 513
The following BLAST results are available for this feature:
BLAST of TCONS_00062969 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KAT52.555e-7475.16Histone acetyltransferase KAT5 OS=Homo sapiens GN=... [more]
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