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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062961 ID=TCONS_00062961|Name=TCONS_00062961|organism=Clytia hemisphaerica|type=transcript|length=5340bpRun BLAST on NCBI protein sequence of TCONS_00062961-protein >TCONS_00062961-protein ID=TCONS_00062961-protein|Name=TCONS_00062961-protein|organism=Clytia hemisphaerica|type=polypeptide|length=506bp MEGQLDESQHLLEDDNQQPQTSSRRSYGLRIAAVATSQIEPQIMGEGEIRRun BLAST on NCBI transcript from alignment at scaffold_375:235393..260819+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062961 ID=TCONS_00062961|Name=TCONS_00062961|organism=Clytia hemisphaerica|type=transcript|length=25427bp|location=Sequence derived from alignment at scaffold_375:235393..260819+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_375:235393..260819+ >TCONS_00062961 ID=TCONS_00062961|Name=TCONS_00062961|organism=Clytia hemisphaerica|type=CDS|length=18252bp|location=Sequence derived from alignment at scaffold_375:235393..260819+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062961 vs. Swiss-Prot (Human)
Match: FRMD8 (FERM domain-containing protein 8 OS=Homo sapiens GN=FRMD8 PE=1 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 9.555e-46 Identity = 117/362 (32.32%), Postives = 176/362 (48.62%), Query Frame = 1
Query: 2896 TAGEIKMMMMEILSIPKTSSHVFALWFISPYLEIQLKDHHIPFLLRKQWSELLEEFSFCKDEDDRSSDEPVLVFQRNSFLSLADEEKQSHKLVIQRLFQEAKHNILTTRYPIPIPDAEILAGMIARVKLGPYNAEVHKAGFFKKTLSEYLPYYAI--GSNKFLQL----LRQSSSEQHLLQQYERATNKSHDSLSCQL-------EFLKYCRSLSFYGCAFFKGSAIQDGIEMKPWKSCEKDVIVGINRLGITLFNGSKEEVLIHLPYDDLSWEFIRSKDVGNKEEEQSKGEDIFCIEYDTIHDGEQNSEQIQILSNQACMMDAMVTSCINFMNVMKIPKTPTSADYKKILDISYSTMPSSK 3942
+A E+ + E+L +P + VFALW +SP LE+QLK H P+ L +QW ELL F+ D DD + DEP L F+RN F E + + V++ L++EAK N+L RYP + D E L ++ RV+LGPY A ++ L +LP + G + F L R EQ LL Y + S D C+ +L C L FYGCAFF G + + + K V V I+ G+ + + ++ VL+ L + +LSW D + EEE E I +E+D +G ++ ++I S QA +M +++ CI + P P + D S S P +
Sbjct: 53 SAHELHRAVREVLQLPDIALDVFALWLVSPLLEVQLKPKHQPYKLGRQWPELLLRFTSAPD-DDVAMDEPFLQFRRNVFFPKRRELQIHDEEVLRLLYEEAKGNVLAARYPCDVEDCEALGALVCRVQLGPYQPGRPAACDLREKLDSFLPAHLCKRGQSLFAALRGRGARAGPGEQGLLNAYRQVQEVSSDG-GCEAALGTHYRAYLLKCHELPFYGCAFFHGE-VDKPAQGFLHRGGRKPVSVAISLEGVHVIDSREKHVLLGLRFQELSW------DHTSPEEE----EPILWLEFDGDSEGTPVNKLLKIYSKQAELMSSLIEYCIELSQAAE-PAGPQDSATGSPSDPSSSLAPVQR 400 The following BLAST results are available for this feature:
BLAST of TCONS_00062961 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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