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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062923 ID=TCONS_00062923|Name=TCONS_00062923|organism=Clytia hemisphaerica|type=transcript|length=816bp
AAttgattcaaataaaaaatactgTAGAACgagaaattgatttttgttaa
aaaagaaaggttttctagatttgtgagaaaaaaacaaactttgtgAGAGC
GAGAAATGATTCAACCAAAGAATATTGTTTTTATAACTTTAAGTTGTGTA
GTTTTGGGACTTTTCTTAGCCTCTTGTTGGGGTGTTGGATGGGCTCATTG
GAAAGTCATAAATTACGAAAAGACTACCAACGTCTCAATTGGCATTTGGG
AAGAATGTTCTTGGAAAACGAAAGTCAAAGAATGTAATGGTCTACCAGAA
GAATTGACAAACATCAAATATACCAGAGGATGTGCGATGCTTGCTGTTTT
CACAAGTTTTCTCACCTTCGTCTTCTCTCTGGCAGCAGCAAGCAATGGTG
GTAGTAATGTTGCTTGGACTTATTTCTGCATTGGTTTGATCTTTGCTGTT
ACAGTGTGTTTAGGGATAATATCAGGAGCCACTTTCACAATTGATTTCGA
ACATTTTAAAAACGTGAAACACATAAGCTATGTCAACTATGGATGGGCAT
ACACTTTGAATTGGGTTGGAACTATTGTTGCATTTTTAACTACTATTTTA
TCATGCTCTGTTACTTTTGCTGAGAGAAATACAGTATCTTATGCAACAAT
AACGGTTTGATAGAAAAGTTTAGCCTGTTCTGGgtgttttgggcataaat
tcaACAATAAGAGCATACCgtcgcgaatctaaaaatagacattgattttt
aagtttgactgaaattcaatcccatcagcctttgcgtttattacgcttgc
acgcaaattacactNG Run BLAST on NCBI protein sequence of TCONS_00062923-protein >TCONS_00062923-protein ID=TCONS_00062923-protein|Name=TCONS_00062923-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MIQPKNIVFITLSCVVLGLFLASCWGVGWAHWKVINYEKTTNVSIGIWEE
CSWKTKVKECNGLPEELTNIKYTRGCAMLAVFTSFLTFVFSLAAASNGGS
NVAWTYFCIGLIFAVTVCLGIISGATFTIDFEHFKNVKHISYVNYGWAYT
LNWVGTIVAFLTTILSCSVTFAERNTVSYATITV Run BLAST on NCBI transcript from alignment at scaffold_374:18752..20342+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062923 ID=TCONS_00062923|Name=TCONS_00062923|organism=Clytia hemisphaerica|type=transcript|length=1591bp|location=Sequence derived from alignment at scaffold_374:18752..20342+ (Clytia hemisphaerica)
AAttgattcaaataaaaaatactgTAGAACgagaaattgatttttgttaa
aaaagaaaggttttctagatttgtgagaaaaaaacaaactttgtgAGAGC
GAGAAATGATTCAACCAAAGAATATTGTTTTTATAACTTTAAGTTGTGTA
GTTTTGGGACTTTTCTTAGCCTCTTGTTGGGGTGTTGGATGGGCTCATTG
GAAAGTCATAAATTACGAAAAGACTACCAACGGTAATTTCTTTATCGCCT
TTACCGCTCCTTGTACGCGGAACCTACTTTCTTTCAAGGAAATTGAATAC
GACTTTCagcaaaaattatgaaaaatattcaattcGTCTAGCAAATAAAC
AATCGCTCTATTTAGGTCTATTTTTTAGATTACTGAGCTTATTATATTGT
TTCTACAGTGCATATTTTCTTCCAAAGATATTGCCTTTTAACCCGGGGGG
GAGTACTCCCCTTGTCGACCGAcaggggtgctccgctgaggttcgaaaat
tggaccctacgtgggactcgaaatttgcgaaaaaagtgaccctgaatggg
actgaaattccaaagttttctcaaattttctactttttccccaaattttc
caaaaataggcaccctacgagggactgatttttctcttttggtgtttttg
cgaccctacatgggactcgtggaggttaaaaaaggtaccctgaccagcgg
agcatacCCGTATACCATCttaccctagtacccccccccccctccgggcC
TTTTAACAAATcattaacctttccagcgcgcaacattttttgacAAATGT
GAAAACTGAcataaaagcttgtaacttGAGAGTTAGACAATGGTTTTGGt
acttttgaaaatatatttttatactctttctaaaagcatttATGTCCTTT
TGAATCAAGTGATCAGGAGTTATAGCTTTAAGCCTGGGACTTGGTATATA
CACGTCTGTCGGGTTGGAATGATTGagattaaaatatttcttgattttAT
GTTTCAGTCTCAATTGGCATTTGGGAAGAATGTTCTTGGAAAACGAAAGT
CAAAGAATGTAATGGTCTACCAGAAGAATTGACAAACATCAAATATACCA
GAGGATGTGCGATGCTTGCTGTTTTCACAAGTTTTCTCACCTTCGTCTTC
TCTCTGGCAGCAGCAAGCAATGGTGGTAGTAATGTTGCTTGGACTTATTT
CTGCATTGGTTTGATCTTTGCTGTTACAGTGTGTTTAGGGATAATATCAG
GAGCCACTTTCACAATTGATTTCGAACATTTTAAAAACGTGAAACACATA
AGCTATGTCAACTATGGATGGGCATACACTTTGAATTGGGTTGGAACTAT
TGTTGCATTTTTAACTACTATTTTATCATGCTCTGTTACTTTTGCTGAGA
GAAATACAGTATCTTATGCAACAATAACGGTTTGATAGAAAAGTTTAGCC
TGTTCTGGgtgttttgggcataaattcaACAATAAGAGCATACCgtcgcg
aatctaaaaatagacattgatttttaagtttgactgaaattcaatcccat
cagcctttgcgtttattacgcttgcacgcaaattacactNG Coding sequence (CDS) from alignment at scaffold_374:18752..20342+ >TCONS_00062923 ID=TCONS_00062923|Name=TCONS_00062923|organism=Clytia hemisphaerica|type=CDS|length=1110bp|location=Sequence derived from alignment at scaffold_374:18752..20342+ (Clytia hemisphaerica)
ATGATTCAACCAAAGAATATTGTTTTTATAACTTTAAGTTGTGTAGTTTT
GGGACTTTTCTTAGCCTCTTGTTGGGGTGTTGGATGGGCTCATTGGAAAG
TCATAAATTACGAAAAGACTACCAACGTCTCAATTGGCATTTGGGAAGAA
TGTTCTTGGAAAACGAAAGTCAAAGAATGTAATGGTCTACCAGAAGAATT
GACAAACATCAAATATACCAGAGGATGTGCGATGCTTGCTGTTTTCACAA
GTTTTCTCACCTTCGTCTTCTCTCTGGCAGCAGCAAGCAATGGTGGTAGT
AATGTTGCTTGGACTTATTTCTGCATTGGTTTGATCTTTGCTGTTACAGT
GTGTTTAGGGATAATATCAGGAGCCACTTTCACAATTGATTTCGAACATT
TTAAAAACGTGAAACACATAAGCTATGTCAACTATGGATGGGCATACACT
TTGAATTGGGTTGGAACTATTGTTGCATTTTTAACTACTATTTTATCATG
CTCTGTTACTTTTGCTGAGAGAAATACAGTATCTTATGCAACAATAACGG
TTTGAATGATTCAACCAAAGAATATTGTTTTTATAACTTTAAGTTGTGTA
GTTTTGGGACTTTTCTTAGCCTCTTGTTGGGGTGTTGGATGGGCTCATTG
GAAAGTCATAAATTACGAAAAGACTACCAACGTCTCAATTGGCATTTGGG
AAGAATGTTCTTGGAAAACGAAAGTCAAAGAATGTAATGGTCTACCAGAA
GAATTGACAAACATCAAATATACCAGAGGATGTGCGATGCTTGCTGTTTT
CACAAGTTTTCTCACCTTCGTCTTCTCTCTGGCAGCAGCAAGCAATGGTG
GTAGTAATGTTGCTTGGACTTATTTCTGCATTGGTTTGATCTTTGCTGTT
ACAGTGTGTTTAGGGATAATATCAGGAGCCACTTTCACAATTGATTTCGA
ACATTTTAAAAACGTGAAACACATAAGCTATGTCAACTATGGATGGGCAT
ACACTTTGAATTGGGTTGGAACTATTGTTGCATTTTTAACTACTATTTTA
TCATGCTCTGTTACTTTTGCTGAGAGAAATACAGTATCTTATGCAACAAT
AACGGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062923-exon-scaffold_374-1491911889:18752..18983 | TCONS_00062923-exon-scaffold_374-1491911889:18752..18983 | Clytia hemisphaerica | exon |
| TCONS_00062923-exon-scaffold_374-1510915933:18752..18983 | TCONS_00062923-exon-scaffold_374-1510915933:18752..18983 | Clytia hemisphaerica | exon |
| TCONS_00062923-exon-scaffold_374-1575043694:18752..18983 | TCONS_00062923-exon-scaffold_374-1575043694:18752..18983 | Clytia hemisphaerica | exon |
| TCONS_00062923-exon-scaffold_374-1491911889:19759..20342 | TCONS_00062923-exon-scaffold_374-1491911889:19759..20342 | Clytia hemisphaerica | exon |
| TCONS_00062923-exon-scaffold_374-1510915933:19759..20342 | TCONS_00062923-exon-scaffold_374-1510915933:19759..20342 | Clytia hemisphaerica | exon |
| TCONS_00062923-exon-scaffold_374-1575043694:19759..20342 | TCONS_00062923-exon-scaffold_374-1575043694:19759..20342 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_374 | supercontig | scaffold_374:18752..20342 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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