TCONS_00062900 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00062900
Unique Name	TCONS_00062900
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1655

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_373:73516..77146-

transcript sequence

>TCONS_00062900 ID=TCONS_00062900|Name=TCONS_00062900|organism=Clytia hemisphaerica|type=transcript|length=1655bp
actttcaagactgtataattttagaaaaaatatacactgaatTTATCGTC
AGGATTTTGAGATTTCATTTCTGTtggacatgatgtccgattgactaaaa
atatttatttgcaacCCTGCTGATTGACTATTAACAAGCAACATAATCAC
ACAAAATCAACTGTCAATCATATACTCAAACAATTCATAAAAATTAGAAC
CCAGGtgcttttgctttctttttcaagaaaaatacaacacggttttgaat
gttttagcTGAACAACCAGACCAGATTATTACATTCGCTatatcccttta
gagcagagcaTGGTTTTTGCATAATGGATGGTCTGTTATGAGATTACATC
TACCAAGCCATGTTCAAAATCATCGTTTGTTGGTGTTTAGgtacaaagaa
aataaatcgaTAAGATGTCAAGAAAGTGTTGTCCCTGCTGTTCAGTCCTT
ATTGCATCAATTTGCCTGGCAGTTGTTGGAATCTTGATAGCGTGTCTGAA
TTTTGGTGCTATGCCATTATATAAAGGTATTGTAAAGAAGAAATTGGTGA
TGAAAAAAGGTTCAATGACCTACAAAAATTGGGAACATGCACCACTACCA
GTGTACATGAATTATTACATCTTTAATTACACAAATTTGGAGGAGATTAA
GAATGGAAGCAAACCAATTATTAAAGAGCTGGGACCTTATGCATACAGGT
GGGAATCTATTTTATGCACAAGTNATGATCTTCAAAGAATTGTTAAATGG
AGAGGTTCTGaTGAAGTGCCTCATTGGTTGACAAAATATGGTCGAATGAT
CAATGGTACAGATGGAACACACTTCAAACCTTTTGTTACCAAGTCAGATC
AACTTTATGCATTCATCCCTGATATATGCAGGTCTATTTACATCGTGTAC
GACCAAGAAGATTCAGTACAAAATATCGATCTCTACCGATATACAACAGA
TGAATATTCCATGTTGAACCATACTGCTAACCCTGACAATGAAGCATTTT
GTGTTGGTGGTTGTGGACCATCAGGAATCATTCCAATCGGACAGTGCCAA
GACGGAGACCCACCAGTTTATGCATCTGGTGTTCACTTTTATCAATCTGA
TCCCGCCTTGTTTGAAGCTGTTGATGGCTTGAGCAATCCTGACAAAGAAA
AACACGCCACTTTGATCAGCGTTGAACCTGATACTGGTACCACAATGAAA
GCAAACAAGCGATTGCAAATCAATGTCAAAGCTGAATACGTTGAATTCTT
CCCaaaaacttatggGTTCCCAAAAGGTGATGGTATCTACTTTCCAGTGT
TTTATGTTGATGAAGAGTTCAAATTAGATGAGGCGAATGCGAAGACGTTT
GAAGATGAAGTGACAAACCCTAAGAAGTACATTGTGGTTTTCCGATGGGT
GTTGGTTGGTCTTGGTGGATTCCTCATCTTGCTCGGTGTTACAATGTATG
TGTGTCATGCCGTTCGCAATAACGACGCCGAAGACGGATATAAGAAGTTT
TCTGGTCGTTGAGGATGCATTGTTCAAATGgatgatttttcttcttcaaa
caGCTCTGAATTCGAGCAATTTGGCCAATCTTTCGGTGGAGATCAATTAC
TCCACAATGAATTATAGTTAGGGCAGATTAGGGGTATGATTGTATTACAA
ATCTC

Run BLAST on NCBI

transcript from alignment at scaffold_373:73516..77146-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00062900 ID=TCONS_00062900|Name=TCONS_00062900|organism=Clytia hemisphaerica|type=transcript|length=3631bp|location=Sequence derived from alignment at scaffold_373:73516..77146- (Clytia hemisphaerica)
ACTTTCAAGACTGTATAATTTTAGAAAAAATATACACTGAATTTATCGTC
AGGATTTTGAGATTTCATTTCTGTTGGACATGATGTCCGATTGACTAAAA
ATATTTATTTGCAACCCTGCTGATTGACTATTAACAAGCAACATAATCAC
ACAAAATCAACTGTCAATCATATACTCAAACAATTCATAAAAATTAGAAC
CCAGGTGCTTTTGCTTTCTTTTTCAAGAAAAATACAACACGGTTTTGAAT
GTTTTAGCTGAACAACCAGACCAGATTATTACATTCGCTATATCCCTTTA
GAGCAGAGCATGGTTTTTGCATAATGGATGGTCTGTTATGAGATTACATC
TACCAAGCCATGTTCAAAATCATCGTTTGTTGGTGTTTAGGTACAAAGAA
AATAAATCGATAAGATGTCAAGAAAGTGTTGTCCCTGCTGTTCAGTCCTT
ATTGCATCAATTTGCCTGGCAGTTGTTGGAATCTTGATAGCGTGTCTGAA
TTTTGGTGCTATGCCATTATATAAAGGTATTGTAAAGAAGGTATGATTAT
TTTTATTTATATTTTGTATCCAAACTTTTTCCTGATTATGAATTGATGGT
AGTTGTCTTTAAATCAACCTTGATTTTTCTTGGAAACTTATTAATTTCAA
CTTCTAATTGAATTTCTATTNATTATTTTTATTTATATTTTGTATCCAAA
CTTCTTCCTGATTATGAATTGATGGTAGTTGTCTTTTAATCAACCTTGAT
TTTTCTTGGAAACTTATTAATTTCAACCTCTAATTGAATTTCTATCACAG
AAATTGGTGATGAAAAAAGGTTCAATGACCTACAAAAATTGGGAACATGC
ACCACTACCAGTGTACATGAATTATTACATCTTTAATTACACAAATTTGG
AGGAGATTAAGAATGGAAGCAAACCAATTATTAAAGAGCTGGGACCTTAT
GCATACAGGTGGGAATCTATTTTATGCACAAGTNATGATCTTCAAAGAAT
TGTTAAATGGAGAGGTTCTGAGTAAGTTTTCAATTTTTTATTTCTCATGC
CCTTATCTTATTTCCCATCATCCTTTTCTTCATCCCTTTTGTATCCTACA
AATTTTTAAATTGTTTAAAAACTTTCAAGATTCTTTTTTTTTTGAAATAC
TCTTAAAACTGATAGCGCAATCAAAATATAACAATTAAAACGAATTTGGA
AATGATTCAAAAGTAAAAATATGAAAATAATAAAACTGTTAGAAGTGCTG
TTCGCACGTATGTCAAAAGCAGAAAGAAGAGAACTTTGACTGATTACAGG
GAAGTGAAATATTATGATCTACGTAACCAAATGACTTTAAACATCATATG
TAGATCTGTTGTTTTCACGCTAAATGAATTGAAATATGGTATCAAATAAT
TCCTTACCTGTATGGTTTGAGGGAATTAATCAATTTCAATAACCTTTAAA
AATTGGGGTTTGAATACTAATAGTGTAACAACAATAAACACACATACAAT
TTATGCAAATAATCATTATTGAAATATATGATGTCATTCTGTTACAGTGA
AGTGCCTCATTGGTTGACAAAATATGGTCGAATGATCAATGGTACAGGTA
ATGAAAATGATATTTGTTTTTAGAAAAACTGTTTCAATTTTGCTAAAAGG
CTCTTATTAAAATTGTCAGTGATATTACTAGGAAATGGTAAACTCCAGAA
ATTTAAACATTTCCTAAATCGCCCTCTAGGAATATTACCCCTTGGAGAAT
TAGTCTCTTTAGAAGGCGTTTTGATATTACTTTACTCATTTTTAATTTTT
TTTTACTATCTATCATTCTATTGTATTGTCAGATGGAACACACTTCAAAC
CTTTTGTTACCAAGTCAGATCAACTTTATGCATTCATCCCTGATATATGC
AGGTACAACCTTATTTTGACCACAATTCAGATGTGTAATTTGAATTGAAA
AACTAGGAATATTTTGAAGATGTAGTGCTTGGGACCATTATCAACTGTGT
CTAGGTATGAATGTGACAAGAACAAAAATGTTTCTCCTCTTCACTTTCAC
CATGCAAGTAAAAAGCTATTTATTTGGCATTTTTTTAGGTCTATTTACAT
CGTGTACGACCAAGAAGATTCAGTACAAAATATCGATCTCTACCGATATA
CAACAGATGAATATTCCATGTTGAACCATACTGCTAACCCTGACAATGAA
GCATTTTGTGTTGGTGGTTGTGGACCATCAGGAATCATTCCAATCGGACA
GTGCCAAGACGGAGGTATAATGAAAATTTGAACACTCTTCTATCATCTTT
GTTTGTGTCTATTATTATTATAGGGCAAACGAATTTTTTACCTTCAAAAC
GATGGAGATCCACTTTCCTCATTTACTTTTTTTATGTTTCCAGACCCACC
AGTTTATGCATCTGGTGTTCACTTTTATCAATCTGATCCCGCCTTGTTTG
AAGCTGTTGATGGCTTGAGCAATCCTGACAAAGAAAAACACGCCACTTTG
ATCAGCGTTGAACCTGTAAGACTTTTATTACAAGTTACGCAGATCTAGAA
AACTCCCTAAAACTTAGTAAGACTTTTTATTCTCACTCACAGGATTTTTC
TCTCTGCAAGACCTTTTTTGGCAAGGTGAATTGGTATAGAAATGCCAATT
TCAAATCGATTGTTTTTATAGTTGATGATAAACTCNTTTTTTGGCAAGGT
GAATTGGTATAGAAATGCCAATTTCAAATCGATTGGTTTTATAGTTGATG
ATAAACTCAATATTTATATCTAACCCATCAGGATACTGGTACCACAATGA
AAGCAAACAAGCGATTGCAAATCAATGTCAAAGCTGAATACGTTGAATTC
TTCCCGTGAGTTTGTTTTGATACCAACTTTCCTATCTTCATAGAAAAATC
CAAAACATCTATCACTGAACTCACATATTATTTTCTTTTGTTTTCAGAAA
AACTTATGGGTTCCCAAAAGGTGATGGTATCTACTTTCCAGTGTTTTATG
TTGATGAAGTAAGTCAATCTTGTAATTTAATGTTTAATTCAATTTTTTTG
GCCATGAGTTTAAACAACAAAGAAATAATTATTTTAACTATTTTCGCTTG
AAAACTTAGGAGTTCAAATTAGATGAGGCGAATGCGAAGACGTTTGAAGA
TGAAGTGACAAACCCTAAGAAGTACATTGTGGTTTTCCGATGGGTGTTGG
TTGGTCTTGGTGGATTCCTCATCTTGCTCGGTGTTACAATGTATGTGTGT
CATGCCGTTCGCAATAACGACGCCGAAGACGGATATAAGAAGGTCAGTGT
GTGATTCTCTCCATTACAGATTCGATTGAACTTTCTAATAAAGTCTCTTT
TTTATTAAGTTTTTCTAAAACAACTTCTGTTACTTAATTTGAAGTCACAA
ATATATTGGAAGATAGATTTCTTGGATATGTGCTCTTGATAAATTTCTTC
AATAATTTCGTTCCTTGTTTTAGTTTTCTGGTCGTTGAGGATGCATTGTT
CAAATGGATGATTTTTCTTCTTCAAACAGCTCTGAATTCGAGCAATTTGG
CCAATCTTTCGGTGGAGATCAATTACTCCACAATGAATTATAGTTAGGGC
AGATTAGGGGTATGATTGTATTACAAATCTC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039392	XLOC_039392	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_373	supercontig	scaffold_373:73516..77146 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00798093	0.0169726	1.64522	0.0770167	0.0153385	1.42261	1.3187	1.33401	0	0.00385203	0	0	0	0	0.464029	0	0	0	0	0	0	0	0	0	12.4417	8.16777	0	0	0	2.215e-07

Blast

[Close]

BLAST of TCONS_00062900 vs. Swiss-Prot (Human)
Match: SCRB2 (Lysosome membrane protein 2 OS=Homo sapiens GN=SCARB2 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 9.970e-31
Identity = 71/215 (33.02%), Postives = 110/215 (51.16%), Query Frame = 1

Query:  727 DLQRIVKWRGSDEVPHWLTKYGRMINGTDGTHFKPFVTKSDQLYAFIPDICRSIYIVYDQEDSVQNIDLYRYTTDEYSMLNHTANPDNEAFCV-XXXXXXXXXXXXXXXDGDPPVYASGVHFYQSDPALFEAVDGLSNPDKEKHATLISVEPDTGTTMKANKRLQINVKAEYVEFFPKTYGFPKGD--GIYFPVFYVDEEFKLDEANAKTFEDEV 1362
            +  +IV+W G   +  W+T    MINGTDG  F P +TK + LY F  D CRS+YI +   +SVQ +  +RY      + N +   DN  FC+  G      +          P+  S  HFYQ+D     A++G+ +P++E H T + + P TG  +KA KR QIN+  + ++ F +T     GD   + FPV Y++E   +D+  A   +  +
Sbjct:  224 NFTKIVEWNGKTSLDWWITDKCNMINGTDGDSFHPLITKDEVLYVFPSDFCRSVYITFSDYESVQGLPAFRYKVPAEILANTS---DNAGFCIPEGNCLGSGVLNVSICKNGAPIIMSFPHFYQADERFVSAIEGM-HPNQEDHETFVDINPLTGIILKAAKRFQINIYVKKLDDFVET-----GDIRTMVFPVMYLNESVHIDKETASRLKSMI 429

The following BLAST results are available for this feature:

BLAST of TCONS_00062900 vs. Swiss-Prot (Human)

BLAST of TCONS_00062900 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SCRB2	9.970e-31	33.02	Lysosome membrane protein 2 OS=Homo sapiens GN=SCA...	[more]

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TCONS_00062900 (transcript) - C. hemisphaerica