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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062878 ID=TCONS_00062878|Name=TCONS_00062878|organism=Clytia hemisphaerica|type=transcript|length=1349bp
aaactatcaaaaaacaatttctctcaaaatcccttatgaaattttcaaaa
agtaatcAAAAATCATGTTAAAAATGTGATATAGTATGTAATACAATTGA
TAACATATACACGCATAAGATAATGTCCaagaaattttaaagatatCACA
ACAAAGCAAAACTGCAAGACTTTTCAGGCAAATGGTTCAGGGAGAGCACT
CAACAGATCtacaattttcacaaaaagtttcatCACAATATTGTAGATTG
GAAACTAGGAATGGAAGCCGAAATAATGAAAGGCAAAATTCAAGAGTTTC
TAACTCATCAAGTAGAAATTGCTCAACGGCGAGTGAGCCAGGTTACATCA
GCGGTGAAAGAATAAGTAATGGAAACGTACGAACACTCTCTGCATTGTAT
CGTCCTACCTTCCAAAAATTCCCAACTTTTCCTTCCATCTAccaaacaaa
atatcaaaacgaTTTCAAATATATACCGTTCCCGATTGCCAGTGATTTCA
AGCCACAACCAGTTCGTTCAATATATACTGAATTCAAATTTGGGACTTCT
TCATATTGTCAACAATATCAGATGGATCATGCTGATCTAAAGATCAAACA
ATGGCAACGGAAACCGTTACCAACTTCAAGACACCGACATAATAATCCAC
ACCCTTCACTAAAGTTGGTTCAGAATCACCCTCAACATGCTCGTTGGTCT
TGGAGCAGGTTGGAGGACCATCGTAGTGCTCAAAGCAGCACAAACAATGA
acatcaaaaagtcaaataccATCGTTGGAATTCTCGCTGAATGTCTACTT
ATGGAAATAAAGTTGTAACAGAGAGTGAAATTTCTTGCTCTCGTACATAC
CCGTTTTCAGCCGGCCCATATACTTATTTCATCAAATCTTTATCAACAAA
GTAAAACTGGACATTCTCGGACGGGCGAATAAATcttaattttaaagttt
tcataTCATTTATTTAGTCCCGACTTATTGTTAGAAGTATTTTTATGCAA
TGTATATATTTATCATTTATCTAATCTTAGGTGTAATGTAAGCAAGAAAA
AACTTGCCACCTGCTCCTACACAAACAACATTTTTTACCTTGGCTGAGAC
TCAATAGATCATTGTTCTGATATTTTCCGCAGCTTTGAATTCCTTTACTA
TTAAAGTGTATCACGCTATAAACTCTTCTTCGATTCTTTTGGCGGGCGTA
AGTTTTACCGAGATAATTCTGATGCTAAGCAATTAAGTAATACACAATGA
AGACAAGGTGTGAAGCTAAAAGTTACAATCATCAGAGAAAACGAAGAGAG
AAAACgatttgtttgagttaaggagttTGTTTTTAGTTGTAGAGTTTTC Run BLAST on NCBI protein sequence of TCONS_00062878-protein >TCONS_00062878-protein ID=TCONS_00062878-protein|Name=TCONS_00062878-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
MVQGEHSTDLQFSQKVSSQYCRLETRNGSRNNERQNSRVSNSSSRNCSTA
SEPGYISGERISNGNVRTLSALYRPTFQKFPTFPSIYQTKYQNDFKYIPF
PIASDFKPQPVRSIYTEFKFGTSSYCQQYQMDHADLKIKQWQRKPLPTSR
HRHNNPHPSLKLVQNHPQHARWSWSRLEDHRSAQSSTNNEHQKVKYHRWN
SR Run BLAST on NCBI transcript from alignment at scaffold_373:86533..89561+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062878 ID=TCONS_00062878|Name=TCONS_00062878|organism=Clytia hemisphaerica|type=transcript|length=3029bp|location=Sequence derived from alignment at scaffold_373:86533..89561+ (Clytia hemisphaerica)
aaactatcaaaaaacaatttctctcaaaatcccttatgaaattttcaaaa
agtaatcAAAAATCATGTTAAAAATGTGATATAGTATGTAATACAATTGA
TAACATATACACGCATAAGATAATGTCCaagaaattttaaagatatCACA
ACAAAGCAAAACTGCAAGACTTTTCAGGCAAATGGTTCAGGGAGAGCACT
CAACAGATCtacaattttcacaaaaagtttcatCACAATATTGTAGATTG
GAAACTAGGAATGGAAGCCGAAATAATGAAAGGCAAAATTCAAGAGTTTC
TAACTCATCAAGTAGAAATTGCTGTAAGTACAAGCTaacttataattttt
ttttgggaaaaccaCAGATATAGGAAGGGGGTGCGTACGGGATAATATTT
TCATCGGTAATGGCCCCTTTTTAGATCGGTGCATGGTATCGGGGAAAGAT
AAATTGGTAATCGGTATTTCAAGAGCATCTCGGTATCAGTAAAAGACCCT
TTTTCACtatcggtatttcgatatttttggtCAACTATCGGTATCGAAGA
TCAAGTGAAATCAAATAAATCTTCAAACACCCCTTTGTATTTTACGGTCt
cgataattattttcaaacgGCTGGGGATAAAACATTTTGAATGAATAAAA
GCTATTTATGAACTTTTAAATTCACTTTGGAATTAAAGCAATGCTTACAT
GAATATGATACAGAATTTTCTTTTCTGGTTTGAATTAATTGATTTTCCAT
TAAGGTTGAGTATGGTATTACTGACGCAAGATTGAGCCGGTTGGGTACAG
TACTGAAGAAATCTTAAGGCACTCTATGTATACTGAAACGAAAAAGTTCT
AATTCTCAGCTTTTTACAATGGTCAAAATGAGTTGACTTGTCATTAAGGC
AAATATTAACAtccattttcatcatttttttctgcaGCAACGGCGAGTGA
GCCAGGTTACATCAGCGGTGAAAGAATAAGTAATGGAAACGTACGAACAC
TCTCTGCATTGTATCGTCCTACCTTCCAAAAATTCCCAACTTTTCCTTCC
ATCTAccaaacaaaatatcaaaacgaTTTCAAATATATACCGTTCCCGAT
TGCCAGTGATTTCAAGTAAGTTTGATGATTCGATTCTCAGTTAAATTGAT
TAATGCATTTCCAAATTTTCGGTAATTTTTCGGGAGCAGTTCCACTCCTC
TTAGTATAATGTGtcatacatcaaaagaagcaTATTCcgttgtaaaaaat
gaaaaaggctGTTATTATacttaaatttaatttttgcctttttgagATTT
TGGCTAAAAACCTGTTTCTCAGGCCATTTGTGATGACGGCacataacaaa
aaaaattgaatatctcaagaactacaATCGTAGTCgttatatttgagaaa
aaagggaaatccaccgggaagttttgaaaccacaatcgatttgtaagtgc
tctaaagtaggttggaagggtatagttttaggaccttaggatctcaggac
cTAAATGTTCAAAAATGGTTCAATAAGGCTCATAAAATAGCCTGGAGGTC
GGTCTATAAACCCgagtcaaattgaaatatccgattaaatttgtGAGATT
GCCCAAattcgactttctcgcccgcaaactccaaatttcgaaaaacgata
ggaaataagcttaattctcaatagatttccaCCATGATTGTAGTTAACTA
AACTTCATGAAACTTTCACCAATGGTAAACAATTAAACTATCATTCTGAT
TGCAaaattctttaaactttttgatgacgtcagcaaaaatagcagaaaat
agaattttttcaatttctgctGATGTCTTCTTGTAGTAATGGGCATAGTT
CCTGTTCCTGTAATGAAAGAATTATTGATataagattttgttttttattt
aatcaAATTTAGGCCACAACCAGTTCGTTCAATATATACTGAATTCAAAT
TTGGGACTTCTTCATATTGTCAACAATATCAGATGGATCATGCTGATCTA
AAGATCAAACAATGGCAACGGAAACCGTTACCAACTTCAAGACACCGACA
TAATAATCCACACCCTTCACTAAAGTTGGTTCAGAATCACCCTCAACATG
TAAGCTCGCACTATCTTATAAAGTTGATTATACACTTCACGTATTCTTTA
TCTCCGTGCTTAAGGCTAGACTTAGAAAAAACTGCCATCTATAGCAGTGA
GATAAAGCAAAGATAAAAGTCTAGTCGATGTTTAGAATATCTTAATATTC
ACCCTGCTTTCACATCAATTTTTGGTAAACAAAATGTGATATCATTTACG
AAAGTTTTTACGCACATAACACGATTTTATTAATCTATGTTCTTTTAAAC
TTGTCGTTTCAATTTCAGGCTCGTTGGTCTTGGAGCAGGTTGGAGGACCA
TCGTAGTGCTCAAAGCAGCACAAACAATGAacatcaaaaagtcaaatacc
ATCGTTGGAATTCTCGCTGAATGTCTACTTATGGAAATAAAGTTGTAACA
GAGAGTGAAATTTCTTGCTCTCGTACATACCCGTTTTCAGCCGGCCCATA
TACTTATTTCATCAAATCTTTATCAACAAAGTAAAACTGGACATTCTCGG
ACGGGCGAATAAATcttaattttaaagttttcataTCATTTATTTAGTCC
CGACTTATTGTTAGAAGTATTTTTATGCAATGTATATATTTATCATTTAT
CTAATCTTAGGTGTAATGTAAGCAAGAAAAAACTTGCCACCTGCTCCTAC
ACAAACAACATTTTTTACCTTGGCTGAGACTCAATAGATCATTGTTCTGA
TATTTTCCGCAGCTTTGAATTCCTTTACTATTAAAGTGTATCACGCTATA
AACTCTTCTTCGATTCTTTTGGCGGGCGTAAGTTTTACCGAGATAATTCT
GATGCTAAGCAATTAAGTAATACACAATGAAGACAAGGTGTGAAGCTAAA
AGTTACAATCATCAGAGAAAACGAAGAGAGAAAACgatttgtttgagtta
aggagttTGTTTTTAGTTGTAGAGTTTTC Coding sequence (CDS) from alignment at scaffold_373:86533..89561+ >TCONS_00062878 ID=TCONS_00062878|Name=TCONS_00062878|organism=Clytia hemisphaerica|type=CDS|length=2436bp|location=Sequence derived from alignment at scaffold_373:86533..89561+ (Clytia hemisphaerica)
ATGGTTCAGGGAGAGCACTCAACAGATCtacaattttcacaaaaagtttc
atCACAATATTGTAGATTGGAAACTAGGAATGGAAGCCGAAATAATGAAA
GGCAAAATTCAAGAGTTTCTAACTCATCAAGTAGAAATTGCTCAACGGCG
AGTGAGCCAGGTTACATCAGCGGTGAAAGAATAAGTAATGGAAACGTACG
AACACTCTCTGCATTGTATCGTCCTACCTTCCAAAAATTCCCAACTTTTC
CTTCCATCTAccaaacaaaatatcaaaacgaTTTCAAATATATACCGTTC
CCGATTGCCAGTGATTTCAAGCCACAACCAGTTCGTTCAATATATACTGA
ATTCAAATTTGGGACTTCTTCATATTGTCAACAATATCAGATGGATCATG
CTGATCTAAAGATCAAACAATGGCAACGGAAACCGTTACCAACTTCAAGA
CACCGACATAATAATCCACACCCTTCACTAAAGTTGGTTCAGAATCACCC
TCAACATGCTCGTTGGTCTTGGAGCAGGTTGGAGGACCATCGTAGTGCTC
AAAGCAGCACAAACAATGAacatcaaaaagtcaaataccATCGTTGGAAT
TCTCGCTGAATGGTTCAGGGAGAGCACTCAACAGATCtacaattttcaca
aaaagtttcatCACAATATTGTAGATTGGAAACTAGGAATGGAAGCCGAA
ATAATGAAAGGCAAAATTCAAGAGTTTCTAACTCATCAAGTAGAAATTGC
TCAACGGCGAGTGAGCCAGGTTACATCAGCGGTGAAAGAATAAGTAATGG
AAACGTACGAACACTCTCTGCATTGTATCGTCCTACCTTCCAAAAATTCC
CAACTTTTCCTTCCATCTAccaaacaaaatatcaaaacgaTTTCAAATAT
ATACCGTTCCCGATTGCCAGTGATTTCAAGCCACAACCAGTTCGTTCAAT
ATATACTGAATTCAAATTTGGGACTTCTTCATATTGTCAACAATATCAGA
TGGATCATGCTGATCTAAAGATCAAACAATGGCAACGGAAACCGTTACCA
ACTTCAAGACACCGACATAATAATCCACACCCTTCACTAAAGTTGGTTCA
GAATCACCCTCAACATGCTCGTTGGTCTTGGAGCAGGTTGGAGGACCATC
GTAGTGCTCAAAGCAGCACAAACAATGAacatcaaaaagtcaaataccAT
CGTTGGAATTCTCGCTGAATGGTTCAGGGAGAGCACTCAACAGATCtaca
attttcacaaaaagtttcatCACAATATTGTAGATTGGAAACTAGGAATG
GAAGCCGAAATAATGAAAGGCAAAATTCAAGAGTTTCTAACTCATCAAGT
AGAAATTGCTCAACGGCGAGTGAGCCAGGTTACATCAGCGGTGAAAGAAT
AAGTAATGGAAACGTACGAACACTCTCTGCATTGTATCGTCCTACCTTCC
AAAAATTCCCAACTTTTCCTTCCATCTAccaaacaaaatatcaaaacgaT
TTCAAATATATACCGTTCCCGATTGCCAGTGATTTCAAGCCACAACCAGT
TCGTTCAATATATACTGAATTCAAATTTGGGACTTCTTCATATTGTCAAC
AATATCAGATGGATCATGCTGATCTAAAGATCAAACAATGGCAACGGAAA
CCGTTACCAACTTCAAGACACCGACATAATAATCCACACCCTTCACTAAA
GTTGGTTCAGAATCACCCTCAACATGCTCGTTGGTCTTGGAGCAGGTTGG
AGGACCATCGTAGTGCTCAAAGCAGCACAAACAATGAacatcaaaaagtc
aaataccATCGTTGGAATTCTCGCTGAATGGTTCAGGGAGAGCACTCAAC
AGATCtacaattttcacaaaaagtttcatCACAATATTGTAGATTGGAAA
CTAGGAATGGAAGCCGAAATAATGAAAGGCAAAATTCAAGAGTTTCTAAC
TCATCAAGTAGAAATTGCTCAACGGCGAGTGAGCCAGGTTACATCAGCGG
TGAAAGAATAAGTAATGGAAACGTACGAACACTCTCTGCATTGTATCGTC
CTACCTTCCAAAAATTCCCAACTTTTCCTTCCATCTAccaaacaaaatat
caaaacgaTTTCAAATATATACCGTTCCCGATTGCCAGTGATTTCAAGCC
ACAACCAGTTCGTTCAATATATACTGAATTCAAATTTGGGACTTCTTCAT
ATTGTCAACAATATCAGATGGATCATGCTGATCTAAAGATCAAACAATGG
CAACGGAAACCGTTACCAACTTCAAGACACCGACATAATAATCCACACCC
TTCACTAAAGTTGGTTCAGAATCACCCTCAACATGCTCGTTGGTCTTGGA
GCAGGTTGGAGGACCATCGTAGTGCTCAAAGCAGCACAAACAATGAacat
caaaaagtcaaataccATCGTTGGAATTCTCGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062878-exon-scaffold_373-1491911889:86533..86855 | TCONS_00062878-exon-scaffold_373-1491911889:86533..86855 | Clytia hemisphaerica | exon |
| TCONS_00062878-exon-scaffold_373-1510915933:86533..86855 | TCONS_00062878-exon-scaffold_373-1510915933:86533..86855 | Clytia hemisphaerica | exon |
| TCONS_00062878-exon-scaffold_373-1575043694:86533..86855 | TCONS_00062878-exon-scaffold_373-1575043694:86533..86855 | Clytia hemisphaerica | exon |
| TCONS_00062878-exon-scaffold_373-1491911889:87470..87647 | TCONS_00062878-exon-scaffold_373-1491911889:87470..87647 | Clytia hemisphaerica | exon |
| TCONS_00062878-exon-scaffold_373-1510915933:87470..87647 | TCONS_00062878-exon-scaffold_373-1510915933:87470..87647 | Clytia hemisphaerica | exon |
| TCONS_00062878-exon-scaffold_373-1575043694:87470..87647 | TCONS_00062878-exon-scaffold_373-1575043694:87470..87647 | Clytia hemisphaerica | exon |
| TCONS_00062878-exon-scaffold_373-1491911889:88445..88631 | TCONS_00062878-exon-scaffold_373-1491911889:88445..88631 | Clytia hemisphaerica | exon |
| TCONS_00062878-exon-scaffold_373-1510915933:88445..88631 | TCONS_00062878-exon-scaffold_373-1510915933:88445..88631 | Clytia hemisphaerica | exon |
| TCONS_00062878-exon-scaffold_373-1575043694:88445..88631 | TCONS_00062878-exon-scaffold_373-1575043694:88445..88631 | Clytia hemisphaerica | exon |
| TCONS_00062878-exon-scaffold_373-1491911889:88901..89561 | TCONS_00062878-exon-scaffold_373-1491911889:88901..89561 | Clytia hemisphaerica | exon |
| TCONS_00062878-exon-scaffold_373-1510915933:88901..89561 | TCONS_00062878-exon-scaffold_373-1510915933:88901..89561 | Clytia hemisphaerica | exon |
| TCONS_00062878-exon-scaffold_373-1575043694:88901..89561 | TCONS_00062878-exon-scaffold_373-1575043694:88901..89561 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_373 | supercontig | scaffold_373:86533..89561 + |
Blast
The following BLAST results are available for this feature:
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