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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062875 ID=TCONS_00062875|Name=TCONS_00062875|organism=Clytia hemisphaerica|type=transcript|length=2144bp
TTCATTGGCTACGTTGTTACTTGACATGGCGTTTTGAGTGTTGTATGGAG
ATATGGTTTCTTATCTTTAGATTCAACGCCCATACGCCCAAACTTGGGGG
CGGGGAAGCTGGAAAAGGAGAAACTTGAGGTCACCGAGCTCACGTTTCTA
GCGATTGCAGGGGGAGGGGTCTATAATATCTCCAATAGTGAAATTTGTAC
TTAGGATTTCAGATAATCAAACAATGGTTATTTGGAAAATAGAATTAGTT
ATTGTATTGTGTATTCTTACCACGAAAAGGGAGCATGTGTTTGGCTTCTG
TTTTGCAGAGTGTTTCCTCCCCTTCTATGTCGTCAATGGGAACGGTTGAG
TGAACACATGGCTCTTTCTGTTTACCAAAAGCCAAAATCTCGCTCACTGT
ATGTGTAGACATCTCCCTCCATCCGCTTGTCTAAAAAACGAAAATAACAG
AAACGTATAAGTGGCTGAGCAAGAAAAGGAAGGGCGGATGAGTTCAGTTT
CTTTGCAAATAGAAAAccagaaaaatttccaaatacTTTTTGAGAGAATT
GTTTTGGTGTACGGTTGTGTGTGGTATGATATCGGAGGATGTTTGGATGC
GTGGTGGATGTTCTACTGTTTTATTGAaagaaaatcattaaaattggAAT
AATTTGAGACtttggtgggcattgctatctcCAGGTGGAATACgtcaaaa
gaaattcaagatAAATTTTATCACTTCACAAGATAAAGTTTGCTTTCAAA
AACAACATTGACATCCAGTGAGAAAGGAAACCCCCTGAAACCGACTTCAG
ATTACTCATAAACTACTGTAAAACAGGATATCTCGCCGGAGGTCATATTT
GCGGTCAAGAAGAGATCTTTATATGTGTATTTGATGAAGCTTTTGATGAC
GACTGGCAGAATGTTTGAGGAGTAGTTTGTTCTTTGAGTCAACTTATTTG
GAAGGCATTCTACATCACGTCATATGTGGAGAGTATAACTACGAGATTAA
CTGAGAGAGAGAACTTATTGATTTTACAATTGACTTGAACATAACAACAC
GTGCTTGAAACAAGATGGCTTCCAAATCAATGCCGGCCACAGAATTTGAA
GTTTACGTTTCATCGGCCGATAGTGGTATCGATTCTGACAGTGCTTCTAT
TGCCAAACTGAATTCCTCCTTAGAAAGTATCGAACAGCGAAATGAGATCG
ATCCAACAACACTTCTGGCTGATAAAAACGCCCCACATAATGAAAGAGTG
GAGGGGATCGGAAAAGCTTTAGATTGGCTGCGCGATGAACTCACTAAAAT
GAAGGAAACGGATAAAAAGTTGACGAAAAGGTTCATAAAAATGCGATCAC
GGATAGCCGACCATAAGGAGTTCATAGAGAACGGAGGTTTGTTAGCGGTC
GAACAGCCCATCCTCCTTGAAACAACAACAGACGATTGTACGTCAGAACT
TATGAGAAGAAAAATGTCGCAAAAACGACCTGATTATAATTTGATTGCTA
AAGATGGTGCATTTCCGACACATGGGCTAAACTTTGAGAATAACAAACGT
GCGACGTGGGTTATATAAAGACTGGTACCAAGTTGTAGTAAAAGAAGAGT
TACTGAAGTCAATTTTTGATGGACGGATTTGTCAGAAAGCTTCGTTTCAT
GATCGCCGCTCAGCGTAAACATTGAAATGTAATTCCATAGAACAAAAGTG
CGGAACGATGAAATGTTGATTTGACCTTAACATATCTCATAACGGAATGA
ACTGCTTTCGAAAGACTCTTATGTGGATTACAATCTCAAAAACATGTTTC
TTTGATTTCGAAAACGTGAAATCTTTGATTATTACACTGATCTGTTTTGT
TTGTAAGCTAAGAGATTTAGTTAGGATTGAGCTACGTAATGTAAATTTTC
AGCTCACGGCTGCAGAGTACCTTTTCAATCTCAGGATCCCAACTCGAACT
ATACCCTTTAAAGCTTGAAAACAGTTTATTTAATAACCAAAATTTTTAAG
TCGTGTTGAACTTATTTTAAAAATGAtatatattttgtaaaaattgtagt
tttgttaaatagtaaagtaaatatTCATTTTGGACCATAGGCATTATCGC
AAAGGATATTTAAAGAGAAAATCAAGATGATAATGAATCAAccg Run BLAST on NCBI protein sequence of TCONS_00062875-protein >TCONS_00062875-protein ID=TCONS_00062875-protein|Name=TCONS_00062875-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
MASKSMPATEFEVYVSSADSGIDSDSASIAKLNSSLESIEQRNEIDPTTL
LADKNAPHNERVEGIGKALDWLRDELTKMKETDKKLTKRFIKMRSRIADH
KEFIENGGLLAVEQPILLETTTDDCTSELMRRKMSQKRPDYNLIAKDGAF
PTHGLNFENNKRATWVI Run BLAST on NCBI transcript from alignment at scaffold_373:53133..57618+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062875 ID=TCONS_00062875|Name=TCONS_00062875|organism=Clytia hemisphaerica|type=transcript|length=4486bp|location=Sequence derived from alignment at scaffold_373:53133..57618+ (Clytia hemisphaerica)
TTCATTGGCTACGTTGTTACTTGACATGGCGTTTTGAGTGTTGTATGGAG
ATATGGTTTCTTATCTTTAGATTCAACGCCCATACGCCCAAACTTGGGGG
CGGGGAAGCTGGAAAAGGAGAAACTTGAGGTCACCGAGCTCACGTTTCTA
GCGATTGCAGGGGGAGGGGTCTATAATATCTCCAATAGTGAAATTTGTAC
TTAGGATTTCAGATAATCAAACAATGGTTATTTGGAAAATAGAATTAGTT
ATTGTATTGTGTATTCTTACCACGAAAAGGGAGCATGTGTTTGGCTTCTG
TTTTGCAGAGTGTTTCCTCCCCTTCTATGTCGTCAATGGGAACGGTTGAG
TGAACACATGGCTCTTTCTGTTTACCAAAAGCCAAAATCTCGCTCACTGT
ATGTGTAGACATCTCCCTCCATCCGCTTGTCTAAAAAACGAAAATAACAG
AAACGTATAAGTGGCTGAGCAAGAAAAGGAAGGGCGGATGAGTTCAGTTT
CTTTGCAAATAGAAAAccagaaaaatttccaaatacTTTTTGAGAGAATT
GTTTTGGTGTACGGTTGTGTGTGGTATGATATCGGAGGATGTTTGGATGC
GTGGTGGATGTTCTACTGTTTTATTGAGTGAGTTAAATGTTCAGTAACGC
TGTAGGTTGGATTTACTCCAGgatctgatttttttgcatttgatAATCTG
ATGGTAACAAAGCACCATGCAATAAATCAGAGAGCGGATATACTAACAGA
GTCTGACCACTACAGTATTGTAAGTtggattttcaacgttttctcTAGTT
TATCGCTTTCTTCCGATAGCCTTGTCGGGGTCTTTTCGTGAGGAAACATA
CTAAGTTTAAATACAAGATGCGAaaattatttattcaaaataaccGAAGG
GAAACTGATAAACATGTCAAATGTCTCCCAAATATTTTATGATCAATCGa
tataaaaagaatttttcaaagaaaatgaacatcaaattttgatgatgatT
CCGTTAGAAAGTATATAATGTCTTCACGAAGAATCGAGAAACGAAAAAGA
GGATAACTCTTTCTTCATCTTCGTTGAGACAGACGGTCTTCAAACTTTTT
GGTTTTCCGCCGAAAATTGATAAACTATAAAAGAAGGGGCTTTCTTGGAC
GTACTTGAGACATTCATTCATTCGGGATTTCTTTTTGATGCTCGGCTTTG
ATGAAGTTTTATGGGCAGGAAAAAGAATCTAAACACTTTTTTATTAAgaa
tatatttttatcaaagctTCTATGAATCACTCATTTTTATTTGACCGTAG
AACGTCTTCAGTCTGTTGGCTTTTGGAAGAAATCTACTGTGGTAAGCGGA
CGTCATTGGGAGAAAAACATGTTTGTCAGTCAAACCAAAGTTACAAATCG
GTTAAAATATCATGCTCTTGTGAGAAAATATCAGCGGCCTTAATTCCAAT
ATATAATTAAATGATCCTAAGAGTTTTTACCGAGAAATTCCAGCAGTGAT
AGATGGGAAAATTCAACTTTGACAAAGATCAACTATTTCAATCTGACGTT
TTCCGGGAAAAACTTTAAAAGCAGTGATATCAGCAAAATGATTCGTCTTT
TGCAcgtgaaagtgaaattttcccACAATTTTGAGAGAGCTTAGAGTGTC
GATAGATTGAAGTATGTTGGCAAGAGATATCCAATTGCTTTTTGTGGTCA
TATCTCAACAAGGCGAGAATAAATAGATCACAAAAATCCAATTGCTCATA
AAAATAAcctagaaaagtttttttaaagctATCCTACGTACGTGTATATA
TGACCTAAAAGTAAAAATGTCTATCAAGCTTTGGTGGTAGGAAGACAGGT
TTGAGAAATGTGTAGGTAAGTCTCTAAAATCTGTTCAGGTagataaaaca
aaatttaaacgaCTGCaacgttttttttgttttatggtAGCGTCGTCAGA
TACGAGGACGTCATCAAAACATGTTTAGAGCACGTTGTTTTTTACGAATA
TTTACTTTGTGATCTTACCAGCATATATTATGGCAAACAACTTTTCTTTG
GAGCGCAAAAGCCTGATCGTAAACATAACAAGCCATCTCCACATTTCGTG
TTTGGAAGATCAGTGGGAGATCACTAACATCATCTCGTGTGTTTAAGGGG
TGAGTTTGGGCGTCGTACTTGTGGTTAGACAagagacccgtcgtgtgttt
ttttataatttgatgtacacaagacgggtctgagctgtgagtccaatatt
ggactcacattttttacagtgggaaattcgaatttagcgctgtcctcact
tactaaaataaaaaccaaatttcgaaagttgcNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNttattaggatctgagaaattcaaactctcaacccat
accatgctatacatttcgccatcagtttatcaaagaagaaatcatagcat
ggattcccaggctaacttGTGGTAGGCTCCCTTTCTTGTTCAGTCTATaa
aagaaatattcgaaaacaatgttttcaaaTACAACGATATGTTTTCAACG
GTTAGGGTGGAAAAAGGGTGGTAAAAAGGCGTTAGTTTGGTAATTTGGGG
CGATATTCTTTACAGGTCAAATTTCTAAACGTTTGATATCCTGCTGAAGG
GGAAAGCTGACGAGTTTTAATAGTTGAATTAAAAACATACAAAATGACTA
TGTCACAGTTATACAAATAATAAAAAGGTACTAAGCTTTAAAGCCCTGTC
AAGAAATTATGAGTGtcaaaattatttaaatgtCAATTTAacctttcatt
ttctctttatcttttccagaagaaaatcattaaaattggAATAATTTGAG
ACtttggtgggcattgctatctcCAGGTGGAATACgtcaaaagaaattca
agatAAATTTTATCACTTCACAAGATAAAGTTTGCTTTCAAAAACAACAT
TGACATCCAGTGAGAAAGGAAACCCCCTGAAACCGACTTCAGATTACTCA
TAAACTACTGTAAAACAGGATATCTCGCCGGAGGTCATATTTGCGGTCAA
GAAGAGATCTTTATATGTGTATTTGATGAAGCTTTTGATGACGACTGGCA
GAATGTTTGAGGAGTAGTTTGTTCTTTGAGTCAACTTATTTGGAAGGCAT
TCTACATCACGTCATATGTGGAGAGTATAACTACGAGATTAACTGAGAGA
GAGAACTTATTGATTTTACAATTGACTTGAACATAACAACACGTGCTTGA
AACAAGATGGCTTCCAAATCAATGCCGGCCACAGAATTTGAAGTTTACGT
TTCATCGGCCGATAGTGGTATCGATTCTGACAGTGCTTCTATTGCCAAAC
TGAATTCCTCCTTAGAAAGTATCGAACAGCGAAATGAGATCGATCCAACA
ACACTTCTGGCTGATAAAAACGCCCCACATAATGAAAGAGTGGAGGGGAT
CGGAAAAGCTTTAGATTGGCTGCGCGATGAACTCACTAAAATGAAGGAAA
CGGATAAAAAGTTGACGAAAAGGTTCATAAAAATGCGATCACGGATAGCC
GACCATAAGGAGTTCATAGAGAACGGAGGTTTGTTAGCGGTCGAACAGCC
CATCCTCCTTGAAACAACAACAGACGATTGTACGTCAGAACTTATGAGAA
GAAAAATGTCGCAAAAACGACCTGATTATAATTTGATTGCTAAAGATGGT
GCATTTCCGACACATGGGCTAAACTTTGAGAATAACAAACGTGCGACGTG
GGTTATATAAAGACTGGTACCAAGTTGTAGTAAAAGAAGAGTTACTGAAG
TCAATTTTTGATGGACGGATTTGTCAGAAAGCTTCGTTTCATGATCGCCG
CTCAGCGTAAACATTGAAATGTAATTCCATAGAACAAAAGTGCGGAACGA
TGAAATGTTGATTTGACCTTAACATATCTCATAACGGAATGAACTGCTTT
CGAAAGACTCTTATGTGGATTACAATCTCAAAAACATGTTTCTTTGATTT
CGAAAACGTGAAATCTTTGATTATTACACTGATCTGTTTTGTTTGTAAGC
TAAGAGATTTAGTTAGGATTGAGCTACGTAATGTAAATTTTCAGCTCACG
GCTGCAGAGTACCTTTTCAATCTCAGGATCCCAACTCGAACTATACCCTT
TAAAGCTTGAAAACAGTTTATTTAATAACCAAAATTTTTAAGTCGTGTTG
AACTTATTTTAAAAATGAtatatattttgtaaaaattgtagttttgttaa
atagtaaagtaaatatTCATTTTGGACCATAGGCATTATCGCAAAGGATA
TTTAAAGAGAAAATCAAGATGATAATGAATCAAccg Coding sequence (CDS) from alignment at scaffold_373:53133..57618+ >TCONS_00062875 ID=TCONS_00062875|Name=TCONS_00062875|organism=Clytia hemisphaerica|type=CDS|length=504bp|location=Sequence derived from alignment at scaffold_373:53133..57618+ (Clytia hemisphaerica)
ATGGCTTCCAAATCAATGCCGGCCACAGAATTTGAAGTTTACGTTTCATC
GGCCGATAGTGGTATCGATTCTGACAGTGCTTCTATTGCCAAACTGAATT
CCTCCTTAGAAAGTATCGAACAGCGAAATGAGATCGATCCAACAACACTT
CTGGCTGATAAAAACGCCCCACATAATGAAAGAGTGGAGGGGATCGGAAA
AGCTTTAGATTGGCTGCGCGATGAACTCACTAAAATGAAGGAAACGGATA
AAAAGTTGACGAAAAGGTTCATAAAAATGCGATCACGGATAGCCGACCAT
AAGGAGTTCATAGAGAACGGAGGTTTGTTAGCGGTCGAACAGCCCATCCT
CCTTGAAACAACAACAGACGATTGTACGTCAGAACTTATGAGAAGAAAAA
TGTCGCAAAAACGACCTGATTATAATTTGATTGCTAAAGATGGTGCATTT
CCGACACATGGGCTAAACTTTGAGAATAACAAACGTGCGACGTGGGTTAT
ATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062875-exon-scaffold_373-1491911889:53133..53759 | TCONS_00062875-exon-scaffold_373-1491911889:53133..53759 | Clytia hemisphaerica | exon |
| TCONS_00062875-exon-scaffold_373-1510915933:53133..53759 | TCONS_00062875-exon-scaffold_373-1510915933:53133..53759 | Clytia hemisphaerica | exon |
| TCONS_00062875-exon-scaffold_373-1575043694:53133..53759 | TCONS_00062875-exon-scaffold_373-1575043694:53133..53759 | Clytia hemisphaerica | exon |
| TCONS_00062875-exon-scaffold_373-1491911889:56102..57618 | TCONS_00062875-exon-scaffold_373-1491911889:56102..57618 | Clytia hemisphaerica | exon |
| TCONS_00062875-exon-scaffold_373-1510915933:56102..57618 | TCONS_00062875-exon-scaffold_373-1510915933:56102..57618 | Clytia hemisphaerica | exon |
| TCONS_00062875-exon-scaffold_373-1575043694:56102..57618 | TCONS_00062875-exon-scaffold_373-1575043694:56102..57618 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_373 | supercontig | scaffold_373:53133..57618 + |
Blast
The following BLAST results are available for this feature:
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