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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062853 ID=TCONS_00062853|Name=TCONS_00062853|organism=Clytia hemisphaerica|type=transcript|length=3123bpRun BLAST on NCBI protein sequence of TCONS_00062853-protein >TCONS_00062853-protein ID=TCONS_00062853-protein|Name=TCONS_00062853-protein|organism=Clytia hemisphaerica|type=polypeptide|length=909bp EYCNIIWTYGFSVRIMTNKNSLRMRICVSEPNSNKGVIARAGENTMVIVDRun BLAST on NCBI transcript from alignment at scaffold_372:373825..390352- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062853 ID=TCONS_00062853|Name=TCONS_00062853|organism=Clytia hemisphaerica|type=transcript|length=16528bp|location=Sequence derived from alignment at scaffold_372:373825..390352- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_372:373825..390352- >TCONS_00062853 ID=TCONS_00062853|Name=TCONS_00062853|organism=Clytia hemisphaerica|type=CDS|length=51870bp|location=Sequence derived from alignment at scaffold_372:373825..390352- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062853 vs. Swiss-Prot (Human)
Match: TGM1 (Protein-glutamine gamma-glutamyltransferase K OS=Homo sapiens GN=TGM1 PE=1 SV=4) HSP 1 Score: 396.356 bits (1017), Expect = 7.587e-122 Identity = 232/685 (33.87%), Postives = 355/685 (51.82%), Query Frame = 1
Query: 718 EHHTDKFKLIEEDAILLRRGQTFKMTVVLARKYHGGTDDFHFVLKTGKNARSINKTLVTIEECTGKEFVQRKQQDKWGYRIVDFTKTEVNVEIFIPSDALVGCFSLTL--EDDDGVIYLH---DSKCCILFNPWCKDDEVYMEDEDKIKEYLLRQRGLIYRGTGYRPVPLKWYFGQFEEICLFTVLKMLDE--MKGKERTSAALIARFLSSKGNSCDNTGLLSGRWDGNYDDGKAPTSWSSTPDILQHYQQKNLSVKYGQCWVFSAMLTTVFRAIGIPCRPVTNYSSAHDSDGNCSNDVYFDKEGEPLDDKSSDSVWNFHVWNDVWMARPDLPPGYGGWQAVDSTPQERSMGLYQMGPCSLLAIKEGEIHLNYDTGFVFAEVNADTIYWQQNDDGKFDPVYRSRTTIGEKVVTKAVGEDKADDITDEYKFVEGSMMERASVKKALL---KSKNIAVKAVPKEIVVEISTEQEAFKPGSDLTGEIKIENTCGELRTMTLFWRVFVVRYDGVVIKVVKSDKHKITVKGNTKHSNFFEINTKEVEDYLSEETLFRITGTVTVDTTKQLAVASHLVNIDKPELMLKILTPDVKAGKPMQCELSMTNPLSKILTECEVKIDGSVIEDRHVEEVSDVKEGSTFKKIVEITPDNIAEKSKKKSLMASFYSRQLGGIQQTIGIKVMRL*GSTG 2742
EHHTD++ E D +++RRGQ F M ++L+R Y +D L G N T V I V + W ++V + +N+ + +A++G F T+ + D G L ++ ILFNPWC +D VY++ ED +EY+L + G IY GT + W +GQF+ L L +LD M R ++R +S+ NS D+ G+L G W G+Y G P++W + +IL Y + SV YGQCWVF+ + TTV R +G+ R VTN++SAHD+D + + D+YFD+ +PL+ + DSVWNFHVWND WM RPDLP G+ GWQ VD+TPQE S G++ GPCS+ +IK G +++ YDT F+FAEVN+D +YWQ+ DDG F VY IG +VTKA+ + +DIT YK EGS ER +V+ A K A + +++ +++ + G DL + + N RT+ L + V Y GV + K K ++ + + KE +L ++ + + V + Q+ H + P+L L +L V G+ + ++ NPL LT +++GS ++ + V D+ T V + + + + L+AS S QL + I + V G G
Sbjct: 128 EHHTDEY---EYDELIVRRGQPFHMLLLLSRTYES-SDRITLELLIGNNPEVGKGTHVIIP-------VGKGGSGGWKAQVVKASGQNLNLRVHTSPNAIIGKFQFTVRTQSDAGEFQLPFDPRNEIYILFNPWCPEDIVYVDHEDWRQEYVLNESGRIYYGTEAQIGERTWNYGQFDHGVLDACLYILDRRGMPYGGRGDPVNVSRVISAMVNSLDDNGVLIGNWSGDYSRGTNPSAWVGSVEILLSYLRTGYSVPYGQCWVFAGVTTTVLRCLGLATRTVTNFNSAHDTDTSLTMDIYFDENMKPLEHLNHDSVWNFHVWNDCWMKRPDLPSGFDGWQVVDATPQETSSGIFCCGPCSVESIKNGLVYMKYDTPFIFAEVNSDKVYWQRQDDGSFKIVYVEEKAIGTLIVTKAISSNMREDITYLYKHPEGSDAERKAVETAAAHGSKPNVYANRGSAEDVAMQVEAQDAVM--GQDLMVSVMLINHSSSRRTVKLHLYLSVTFYTGVSGTIFKETKKEVELAPGASDRVTMPVAYKEYRPHLVDQGAMLLNVSGHVKESGQVLAKQHTFRLRTPDLSLTLLGAAV-VGQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKILNVGDIGGNET----VTLRQSFVPVRPGPRQLIASLDSPQLSQVHGVIQVDVAPAPGDGG 794 The following BLAST results are available for this feature:
BLAST of TCONS_00062853 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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