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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062844 ID=TCONS_00062844|Name=TCONS_00062844|organism=Clytia hemisphaerica|type=transcript|length=6392bpRun BLAST on NCBI protein sequence of TCONS_00062844-protein >TCONS_00062844-protein ID=TCONS_00062844-protein|Name=TCONS_00062844-protein|organism=Clytia hemisphaerica|type=polypeptide|length=716bp MKEMENNNETQIEEKSADNNAWDKAQNALKDLQANKNKPKHNGMNGGYANRun BLAST on NCBI transcript from alignment at scaffold_372:306681..319794- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062844 ID=TCONS_00062844|Name=TCONS_00062844|organism=Clytia hemisphaerica|type=transcript|length=13114bp|location=Sequence derived from alignment at scaffold_372:306681..319794- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_372:306681..319794- >TCONS_00062844 ID=TCONS_00062844|Name=TCONS_00062844|organism=Clytia hemisphaerica|type=CDS|length=21510bp|location=Sequence derived from alignment at scaffold_372:306681..319794- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00062844 vs. Swiss-Prot (Human)
Match: LENG8 (Leukocyte receptor cluster member 8 OS=Homo sapiens GN=LENG8 PE=1 SV=2) HSP 1 Score: 280.026 bits (715), Expect = 2.462e-78 Identity = 144/247 (58.30%), Postives = 167/247 (67.61%), Query Frame = 3
Query: 4365 DTEVTQKKQDRAARFQKDXXXXXXXXXXXLIPKGESPMDEDVD-MNFHINGYCQDLTKPYLRLTSAPDPSTVRPVNILKKSLEHVETQWKKKNDYHFACEQMKSIRQDLTVQGIENEFTVTVYETHARIALEKGDREEFNQCQTCLRRLYSKGINGQVAEFTAYSILYYIYTKSTLDLNSCLASLTKDLKKDALVQHALSVRSALALDNYRSFFKFYLQAPKMGGSLIDLFIARERKEALKRLVKAY 5102
D E KKQ RAARFQ + L D D I G C D+TK YLRLT APDPSTVRPV +LKKSL V+ WK+K DY FACEQMKSIRQDLTVQGI EFTV VYETHARIALEKGD EEFNQCQT L+ LY++ + G V EFTAY ILYYI+TK++ D+ + LA LT++LK D V HAL++R+A AL NY FF+ Y AP M G L+D F RERK ALK ++K Y
Sbjct: 465 DPERELKKQKRAARFQHGHSRRLRLEPLVLQMSSLESSGADPDWQELQIVGTCPDITKHYLRLTCAPDPSTVRPVAVLKKSLCMVKCHWKEKQDYAFACEQMKSIRQDLTVQGIRTEFTVEVYETHARIALEKGDHEEFNQCQTQLKSLYAENLPGNVGEFTAYRILYYIFTKNSGDITTELAYLTRELKADPCVAHALALRTAWALGNYHRFFRLYCHAPCMSGYLVDKFADRERKVALKAMIKTY 711 The following BLAST results are available for this feature:
BLAST of TCONS_00062844 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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