TCONS_00062839 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062839
Unique NameTCONS_00062839
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3955

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062839 ID=TCONS_00062839|Name=TCONS_00062839|organism=Clytia hemisphaerica|type=transcript|length=3955bp
CACTGTTCCTTACATTTCCAGTAACATTAAGTTAAgcataaaaattgaat
atacaaGGACAAGAATAGATACAAAGATGAAAGAAATGGAGAATAACAAT
GAAACACAAATTGAGGAAAAGAGTGCTGATAATAATGCCTGGGATAAAGC
TCAAAATGCATTGAAAGATTTGCAAGCTAATAAGAATAAACCAAAACATA
ATGGTATGAATGGTGGTTATGCAAACCCTTATTCAAACGGAATGATTGGG
AATGGATACCCACCATACAATAATTTTAATCCTCACTTTAATGGTCCACC
ACCTGGTAGCTATTATAATCAACCACCACCTGGACCGTACCAAAGaatgC
CTTATAATCCTAGCTACCAAGGttatcaaaataattacatGCCTCAGTAT
GGAAATCATGGTCCTTACAATGGTCGCCCACGATTCAATGGACCACCTCC
TGCTAATTACATTAACAATAACATTCAAGGTGGTTATTATGGTGCTCCTA
TAAATCAACAAAATGGAGGACCTCCGCTTAAAAACATTCAGAACCAAAAT
AACATGAAAGACAAATCAAAACAAgaagaatttaaagaaaaagtcATCGA
AAAACCAAAATCTTTTGCAGATGCTCTCAAACATAACAAGATGTGGAAAC
AAAAGTctACAATGaatttcaaacaatcaaatgaTATGAACCCTCAAAAT
AAAGGATGGGCATCTGGGGGATTCCTCAAGGTTGGAGAAAAACCCAATGA
CGGAGAACCTGATGCTAATACAAATGTTGAAAAACGTGAAAGAGAAGACT
TGAAAAATGGTGATCAAAACACAGATGAGCCTAAAGCAAAGCACACCAAG
CCCACAACTCCTTTAAAAAGCGAGAACAATAAAAAGAAGGAATGGCCTGA
AGCAATGAAAACATGGGTCAGAGAATCATTTGAGCAGTGTGGTAGTGAAC
GAATTAAGGATAAAATGGAAGAGAAATTGAAAACCTttgtaaatcaagtt
atcaGTGATGGTAGTGCATGGACTATCAACTGGCAGTTAAAGGCTCTTTT
CAAAACTCCACCAAAAGGATACGAACGTAGCTCAAGAAGTTCATATCGTA
ACACTGGCAGTCGGTCGCGCTCCAGAAGTCGTTCGAGGAGTAATACACCT
ACTCGTAGACCGTCCCATAGGCGCTCTTCAAGTAGTGGTGGCTCCTCTAA
CGACAGTCTGGAGAACGTTCGACCTGCATTCAGTAAGAAAATGAAGAACA
GACTTGGtaagaaaatgatcaaaaattcCAATAACAACATCATGGCCAAA
AGCAAAAGTACACCTAACATGAAACAATTTAAGATTGAAAACGATACAGA
GGTTACACAGAAGAAACAAGATCGAGCTGCACGATTTCAGAAAGACTTCA
AGAAGTCTTCGAGCTTCAATTCGTCCAATTTAATACCGAAAGGAGAATCA
CCAATGGATGAAGATGTCGACATGAACTTTCACATCAACGGATACTGCCA
AGATTTGACAAAACCATATTTACGTTTAACTTCGGCGCCTGATCCATCGA
CAGTCCGTCCCGTCAACATTTTGAAGAAGTCATTGGAACACGTCGAAACG
CAATGGAAGAAGAAGAACGACTACCATTTCGCTTGCGAACAGATGAAGTC
CATCCGTCAAGATTTGACCGTCCAAGGAATTGAAAACGAATTCACAGTTA
CAGTATATGAAACCCACGCTAGAATTGCTCTCGAAAAAGGTGATCGAGAG
GAATTCAATCAATGCCAAACGTGTTTACGTAGGCTTTACAGCAAAGGAAT
CAACGGTCAAGTAGCCGAGTTTACGGCCTACAGTATTCTCTACTATATTT
ACACAAAAAGCACTTTGGACTTAAATTCTTGTCTTGCCTCACTGACCAAA
GATCTGAAGAAAGACGCGCTTGTTCAACACGCCCTGTCGGTGCGCTCTGC
ATTGGCACTAGATAATTATCgttcatttttcaagttttatttacaAGCAC
CAAAAATGGGTGGATCTCTCATTGACCTTTTTATAGCTAGGGAACGTAAA
GAAGCACTCAAACGGCTAGTGAAGGCGTAAGTATATAAACACCCCTCCCC
TCCCCTTCTTTCTGAAACCAGCCAGCCTATCCTAGAAATCAGTCGCCTTT
CCTCACATCTAATGAGCAGTTTAAACTTATCTCTTCAACCATTATCCTTT
TAGTATATAAAGTCAACCCCATCTAAGCACATACATTTCTTTATAATTAC
CTCCTCTGTATAGTAGTACTGTTAACACATCCTGTATTTCTTTTTAAGGC
ACTTTAAgtgttaaaattttcttattaaaaaaatctaagCTCCCCATTGA
GgattttttagccagtgggCGACAGTATCGGTAAGAATGTGATTGGATTT
GGAGAAACTTCGACTTAAATATATGAGAATCTCAAATATCTTTACAAAAC
AATTTGCCCCAAAAAGTTTACTATTTTTCGCTGGGATAAATTCTCGGGAC
TCTGGGAATTTTTTCACCGATGCGCAGGTAAGTTTTAACCCTCGGGATAG
ACCTTGAGACTAAATCTGTCCTCTGTAACTTCAGTCCTTTACAAAGCTCA
ATCTACCTTTTCTCTGtatattcatgtttttttttctttctttttcaacc
gTGGTTGATAGGTATCGGCCAAGTTTAAGTGTCGCACATATAACAACCCA
ATTAGCCTTCAAATCTGAAGACGAATGCCTCGCTTGGCTTCAAGAATTGA
ATATCACATTCCTTGCTAACGACCCCACTAAAGTTGATTGTAAAGCATCT
GTTGTTACATAAGGGAGAGAGCATACAGCTCGTTCGAGTTTTTTCATGGC
TGTGAAAGTTGGTTGAGTGCCTCATCCAATGAAAAGCAAAGGAGGAAAGA
AGCCTGATTTTCATGTCAAGGTCCTCTCATTTTACCAAGAAGGTTTTATT
CGCACCCCCTACACGGTAGTAGTAGTTCAGTCACTACACAAAAAGAGACT
aagctttaaaaaatgaaaaataaggtCCTGTTCATAGATCCTGCCCTATA
TCTTATCCTGTTCGCTGTGCTGTCACTATGTCAATTCATCCTACATGGTG
TTTCTACCTACCCTTTAATTCAGTTAAATTTACAGCATTTTCAACACGTA
GCACGCATTATATATGGTATCCCTTATGAACTATATTATGAAAGTCACGG
TAGGTTGGTGGTTCTTAATAAATGAACAGTAAATGGTTATTTCCTTGAAA
TTGAAAGGTTTGTAAGTCTCAATAAACCGAGTGCTATTGGAGCAGATTCA
GACATTTCAAGTATTACAATATTAACATTGCATTTTACGGCAAGAAGAAA
TTGTTACGACTGCTCTATGCAGCATGTCACAATGAAAGATATACAACAAA
CATGATTGGATACGATTTTGACAGTGCTTATATGCTTGTCAAATCGTACA
CAGAGCAAATAGACTGATACTAGCTAGAGTTAGCTCTGTTTTGATGTCTT
GGATTACCTAAGGAAAAACAATTCATGgagaaattttgatgaaaatactC
TGATTTCGTTTTGTTTTatgattaattttttcactagaTGTAGGCGGTAT
TGTTGCTTATATTTTATGAATTGTATTCATATGACATGACGACTTAAACC
CTGGACCCTGTTCCCTTATCCTTTTCCCCTGATCTTTTATAATGTCAATT
TCAGTTTTGAATCTTTGTTATCGATTAGATGCTTGATTTGCACCCTGTTA
CGCCAGTTCCCCACTCTGACAAAGACGATTACGAAATTGCAATTCCATTA
TTGTCTCTGCAGTCTTCTTTTAGAGTTAGTTAGAATTCAGTGACaatctt
tttgtatttattttgtacAAATTGTATATATGATTTATGAAATTATTATT
CTTTTTTCTTACTAAAAGATTCAGATCTACGATTCGAAGAAATCGAACTC
TCAat
Run BLAST on NCBI

transcript from alignment at scaffold_372:306681..316772-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062839 ID=TCONS_00062839|Name=TCONS_00062839|organism=Clytia hemisphaerica|type=transcript|length=10092bp|location=Sequence derived from alignment at scaffold_372:306681..316772- (Clytia hemisphaerica)
CACTGTTCCTTACATTTCCAGTAACATTAAGTTAAGCATAAAAATTGAAT
ATACAAGGACAAGAATAGATACAAAGATGAAAGAAATGGAGAATAACAAT
GAAACACAAATTGAGGAAAAGAGTGCTGATAATAATGCCTGGGATAAAGC
TCAAAATGCATTGAAAGATTTGCAAGCTAATAAGAATAAACCAAAACATA
ATGGTATGAATGGTGGTTATGCAAACCCTTATTCAAACGGAATGATTGGG
AATGGATACCCACCATACAATAATTTTAATCCTCACTTTAATGGTCCACC
ACCTGGTAGCTATTATAATCAACCACCACCTGGACCGTACCAAAGGTAAT
GATATGATGCTAACTAGCTTATCTTTTAAAAATAAAAAAAATGCTGCTTC
TCCAAAAGGATTGCTGCTTTTTTATTAAAGGATTTTTGCCGATTGCCAAA
GTTACTTATTATATAATAGTATACATCTCTGGGTTTTAAATTTAGCTTAG
ACATGGCCTGAAGTAACAATTCAAGTGGATCCAAATGTCCCATCAGGGAT
TACTTTAACTTATTATTATTGTCTTGATACCCAGAGATTACCTTTCAAAG
AGATTACCCTTTAAAGAGATGATGACAAAGAAATAATCAATATTTAAAGC
CTGACTGACATGCTGCTAACGAGTTCAGTCATGATTCTTGTCTCATGTGT
AATCCCATTATATTTTATAAAATTAATGTCTTTTATTTTTATTTTAGAAT
GCCTTATAATCCTAGCTACCAAGGTTATCAAAATAATTACATGCCTCAGT
ATGGAAATCATGGTCCTTACAATGGTCGCCCACGATTCAATGGACCACCT
CCTGCTAATTACATTAACAATAACATTCAAGGTGGTTATTATGGTGCTCC
TATAAATCAACAAAATGGAGGACCTCCGCTTAAAAACATTCAGGTGCGTT
AAAGTACATTTTGAAAAGCTCCTTATTGTGTACAGTTCTGGCAGGAGGTC
TGTACTACAGTTGCATAAAGTGCAAAGGGGGTCCCCCAGCAATTTTTTAT
GGGAGGGGAAAATTGATAAAAGAAAAATTATCCTTGGAAGTTGTTAAACA
AAACAAGTTCACCTAAATAAGAAAGTTTTTCCTATCAAAAAATATCAACA
TGATGCATGGTCACACAAGGAAAAAATGATTGAAAATTAAAAATTATTTG
AAATCAGCTCATCCTCCAGTACAAGTACTCAAAACATAGCCCCAAAAATT
TCCCCAAACAAAAATAAAAGATCCCCACTCCTTGAGCTCAGGGATGAATC
TATGGAGCTGTACAGTACAGACAACTGATCAGTCTAAATTCAACCCTTAA
ATGTTTCTAAACCCTTTCAAAATTTGATTAGTTACACCTTTTGTATTTTC
TTCGCCAATACAGAACCAAAATAACATGAAAGACAAATCAAAACAAGAAG
AATTTAAAGAAAAAGTCATCGAAAAACCAAAATCTTTTGCAGATGCTCTC
AAACATAACAAGATGTGGAAACAAAAGTGTAAGCATTATAACTTGTACTG
GCATTATTAGCCTAATATGACTACCTTAAAGGAAGAAAATTTGGCGGATT
TAGCCAAATTCTGCCAAATTAAGTTCCGGCCAAATTTATATTTTCCTCCA
TTCGCCAAATTAAATTCCCGCCAAATTTGATTTATTTCACGCATTCCCCA
AATTCATGCTATTTCAAGCCTTAAAACTTTTTTTTTTTGCCTATTTAATA
ACGCTTTTGGCCAAAAATATCCTGCAACCGCAAAATTTAGCTCCCGTCAA
ATTTAATTTATCCAGCTATCCGCCAAATTAAATTCCCCCCAAAAATTCTT
CCTTTAAGGTACCTAAATTTTTTTCAATCCTTTGTAGCTATTCATCCAAT
CCATATTTTAGCAAACTTAAATTGATGAAGAAATGCTTGTGTTGTCCAAT
TAAAGTGAACTTAAGATTGTCAGCGTTCTGTTATTGAACCATAAAAGACT
AAGTGGAATAAGTAAGAATAAGTGGTCTATCATCAGCTTTTTCTCAGAAC
AATATCTAACTCACACTTAGTACAACTAACAATGTTGAGATTTGACGTCA
TGTTGTCCTATCCACCCACTTACGAACCCTTTGCTGAATTTTTGTTTTAG
CTACAATGAATTTCAAACAATCAAATGATATGAACCCTCAAAATAAAGGA
TGGGCATCTGGGGGATTCCTCAAGGTTGGAGAAAAACCCAATGACGGAGA
ACCTGATGCTAATACAAATGTTGAAAAACGTGAAAGAGAAGACTTGAAAA
ATGGTGATCAAAACACAGATGAGCCTAAAGCAAAGCACACCAAGCCCACA
ACTCCTTTAAAAAGGTATGTATTCTAAAATACATTGGTTTGGAAGTGTGC
ACTCTCTTTAGAAGGAATTACTTTGAATGGGATAAAATCTTGGTGTCATC
TGCAAAGGAAATTTGGAAAGGCATCATCTGCACAATATTTTTCAACAAAA
CTCAAAATTGTCAAATAAACAATTTTTGAATGCTTACTGACATCAGAGAA
GCGCTAATGATGTTTATTTCAACAACCAGCTGGTAGGATTTGGCGGTAGA
AGGCATAAAATCGTGACAATATTGTCTCCCAATAGCGCAATCTGCGAAAT
AAAGTCCCTACGAACATTTATCCCACTAAGTATTGAATTACACTTACATG
GCTCTAGAGTGTGCATACTTATGTAAATGACCTTAAAGGTAAAAAAACCC
TTCAAATTGCTAAGTTGATCGTACTGCTTTTCATGTTAACAATAGATTTA
AATAGATTTTCATTTGAATTATTGTCAATACCGCTGTCTTTACAGGTCTT
TATTATTTTAAAAATTTAATAATTCTTTTCAGCGAGAACAATAAAAAGAA
GGAATGGCCTGAAGCAATGAAAACATGGGTCAGAGAATCATTTGAGCAGT
GTGGTAGTGAACGAATTAAGGATAAAATGGAAGAGAAATTGAAAACCTTT
GTAAATCAAGTTATCAGTGATGGTAGTGCATGGACTATCAACTGGCAGTT
AAAGGCTCTTTTCAAGTAAGATTTCTAAACTGAGCTGAAAAACCTAGGAA
TTGTTTTCTTTAATCCATCTTACTAAATGTACTCTATAACACTTGAAAAT
GTTTCTTTTAGAAGTCATGTATGGTTTTGGACATTCTATTTGACTCCCTT
AATCGTTTTTGTTTAGAACTCCACCAAAAGGATACGAACGTAGCTCAAGA
AGTTCATATCGTAACACTGGCAGTCGGTCGCGCTCCAGAAGTCGTTCGAG
GAGTAATACACCTACTCGTAGACCGTCCCATAGGCGCTCTTCAAGTAGTG
GTGGCTCCTCTAACGACAGTCTGGAGAACGTTCGACCTGCATTCAGTAAG
AAAATGAAGAACAGACTTGGTAAGAAAATGATCAAAAATTCCAATAACAA
CATCATGGCCAAAAGCAAAAGTACACCTAACATGAAACAATTTAAGATTG
AAAACGATACAGAGGTTACACAGAAGAAACAAGATCGAGCTGCACGATTT
CAGAAAGACTTCAAGAAGTCTTCGAGCTTCAATTCGTCCAATTTAATACC
GAAAGGAGAATCAGTAAGTTTTTCTCTACTGGTTTCCTAAAGATTTCAAT
ACTGAAACTTTGGCAAACTTTATGGCGTAAATGGCTTTTTGGGGAGTCTC
CATTACATCAACAACCGGTGCTAAGTTTCACTCCTAAATTTATTATTGGC
AAATATTTTATTAACTCAATGGTTAACTAGGAACCTGTCATACCAATTTT
CTACCAATCGTACAGACCATTCAACTCTATAACAATACATCTTGTTTTCT
TTTGCAGCCAATGGATGAAGATGTCGACATGAACTTTCACATCAACGGAT
ACTGCCAAGATTTGACAAAACCATATTTACGTTTAACTTCGGTGGGTAAT
ATGTTTTAACCCCTTTTAACATGACATTTTCCATTTTACGTTAGATTTTT
TTACAAGGTTCTGTAAAGGAAACATTGTTAAGTTCTTACATAAATTTTAA
CATGCATGCAAAACTTACGGAAGGGTTTTAAGTAGGTGCTTGCTTGCATT
ACACTTAGGGGAGACTAATAGTTAACTGGAAGAGCTATCTTTGATTCCTA
GTCATGTATGGTTTCAAATACATTACAGTTGATTTCTCGGTTCTATGATT
TCCCCATTTTTCCTTCGCAGGCGCCTGATCCATCGACAGTCCGTCCCGTC
AACATTTTGAAGAAGTCATTGGAACACGTCGAAACGCAATGGAAGAAGAA
GAACGACTACCATTTCGCTTGCGAACAGATGAAGTCCATCCGTCAAGATT
TGACCGTCCAAGGAATTGAAAACGAATTCACAGTTACAGTATATGAAACC
CACGCTAGAATTGCTCTCGAAAAAGTAAGTTTTAGGCAGACATTCCCCTC
TTCATAATTGTATCCCATCCTTTTTAAATATTTTTAAGCCATTTAATATG
ACCCATCCTTTTATAATAACCACAACTTGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAAG
AAAATGATCAAAAATTCCAATAACAACATCATGGCCAAAAGCAAAAGTAC
ACCTAACATGAAACAATTTAAGATTGAAAACGATACAGAGGTTACACAGA
AGAAACAAGATCGAGCTGCACGATTTCAGAAAGACTTCAAGAAGTCTTCG
AGCTTCAATTCGTCCAATTTAATACCGAAAGGAGAATCAGTAAGTTTTTC
TCTACTGGTTTCCTAAAGATTTCAATACTGAAACTTTGGCAAACTTTATG
GCGTAAATGGCTTTTTGGGGAGTCTCCATTACATCAACAACCGGTGCTAA
GTTTCACTCCTAAATTTATTATTGGCAAATATTTTATTAACTCAATGGTT
AACTAGGAACCTGTCATACCAGTTTTCTACCAATCGTACAGACCATTCAA
CTCTATAACAATACATCTTGTTTTCTTTTGCAGCCAATGGATGAAGATGT
CGACATGAACTTTCACATCAACGGATACTGCCAAGATTTGACAAAACCAT
ATTTACGTTTAACTTCGGTGGGTAATATGTTTTAACCCCTTTTAACATGA
CATTTTCCATTTTACGTTAGATTTTTTTACAAGGTTCTGTAAAGGAAACA
TTGTTAAGTTCTTACATAAATTTTAACATGCATGCAAAACTTACGGAAGG
GTTTTAAGTAGGTGCTTGCTTGCATTACACTTAGGGGAGACTAATAGTTA
ACTGGAAGAGCTATCTTTGATTCCTAGTCATGTATGGTTTCAAATACATT
ACAGTTGATTTCTCGGTTCTATGATTTCCCCATTTTTCCTTCGCAGGCGC
CTGATCCATCGACAGTCCGTCCCGTCAACATTTTGAAGAAGTCATTGGAA
CACGTCGAAACGCAATGGAAGAAGAAGAACGACTACCATTTCGCTTGCGA
ACAGATGAAGTCCATCCGTCAAGATTTGACCGTCCAAGGAATTGAAAACG
AATTCACAGTTACAGTATATGAAACCCACGCTAGAATTGCTCTCGAAAAA
GTAAGTTTTAGGCAGACATTCCCCTCTTCATAATTGTATCCCATCCTTTT
TAAATATTTTTAAGCCATTTAATATGACCCATCCTTTTATAATAACCACA
ACTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGTCTCTC
TCTTTTTCCAGGGTGATCGAGAGGAATTCAATCAATGCCAAACGTGTTTA
CGTAGGCTTTACAGCAAAGGAATCAACGGTCAAGTAGCCGAGTTTACGGC
CTACAGTATTCTCTACTATATTTACACAAAAAGCACTTTGGACTTAAATT
CTTGTCTTGCCTCACTGACCAAAGATCTGAAGAAAGACGCGCTTGTTCAA
CACGCCCTGTCGGTGCGCTCTGCATTGGCACTAGATAATTATCGTTCATT
TTTCAAGTTTTATTTACAAGCACCAAAAATGGGTGGATCTCTCATTGACC
TTTTTATAGCTAGGGAACGTAAAGAAGCACTCAAACGGCTAGTGAAGGCG
TAAGTATATAAACACCCCTCCCCTCCCCTTCTTTCTGAAACCAGCCAGCC
TATCCTAGAAATCAGTCGCCTTTCCTCACATCTAATGAGCAGTTTAAACT
TATCTCTTCAACCATTATCCTTTTAGTATATAAAGTCAACCCCATCTAAG
CACATACATTTCTTTATAATTACCTCCTCTGTATAGTAGTACTGTTAACA
CATCCTGTATTTCTTTTTAAGGCACTTTAAGTGTTAAAATTTTCTTATTA
AAAAAATCTAAGCTCCCCATTGAGGATTTTTTAGCCAGTGGGCGACAGTA
TCGGTAAGAATGTGATTGGATTTGGAGAAACTTCGACTTAAATATATGAG
AATCTCAAATATCTTTACAAAACAATTTGCCCCAAAAAGTTTACTATTTT
TCGCTGGGATAAATTCTCGGGACTCTGGGAATTTTTTCACCGATGCGCAG
GTAAGTTTTAACCCTCGGGATAGACCTTGAGACTAAATCTGTCCTCTGTA
ACTTCAGTCCTTTACAAAGCTCAATCTACCTTTTCTCTGTATATTCATGT
TTTTTTTTCTTTCTTTTTCAACCGTGGTTGATAGGTATNATACCTTTTCT
CTGTATATTCATGTTCATTTTATTTTCTTTTTCAACCGTGGTTGATAGGT
ATCGGCCAAGTTTAAGTGTCGCACATATAACAACCCAATTAGCCTTCAAA
TCTGAAGACGAATGCCTCGCTTGGCTTCAAGAATTGAATATCACATTCCT
TGCTAACGACCCCACTAAAGTTGATTGTAAAGCATCTGTTGTTACATAAG
GGAGAGAGCATACAGCTCGTTCGAGTTTTTTCATGGCTGTGAAAGTTGGT
TGAGTGCCTCATCCAATGAAAAGCAAAGGAGGAAAGAAGCCTGATTTTCA
TGTCAAGGTCCTCTCATTTTACCAAGAAGGTTTTATTCGCACCCCCTACA
CGGTAGTAGTAGTTCAGTCACTACACAAAAAGAGACTAAGCTTTAAAAAA
TGAAAAATAAGGTCCTGTTCATAGATCCTGCCCTATATCTTATCCTGTTC
GCTGTGCTGTCACTATGTCAATTCATCCTACATGGTGTTTCTACCTACCC
TTTAATTCAGTTAAATTTACAGCATTTTCAACACGTAGCACGCATTATAT
ATGGTATCCCTTATGAACTATATTATGAAAGTCACGGTAGGTTGGTGGTT
CTTAATAAATGAACAGTAAATGGTTATTTCCTTGAAATTGAAAGGTTTGT
AAGTCTCAATAAACCGAGTGCTATTGGAGCAGATTCAGACATTTCAAGTA
TTACAATATTAACATTGCATTTTACGGCAAGAAGAAATTGTTACGACTGC
TCTATGCAGCATGTCACAATGAAAGATATACAACAAACATGATTGGATAC
GATTTTGACAGTGCTTATATGCTTGTCAAATCGTACACAGAGCAAATAGA
CTGATACTAGCTAGAGTTAGCTCTGTTTTGATGTCTTGGATTACCTAAGG
AAAAACAATTCATGGAGAAATTTTGATGAAAATACTCTGATTTCGTTTTG
TTTTATGATTAATTTTTTCACTAGATGTAGGCGGTATTGTTGCTTATATT
TTATGAATTGTATTCATATGACATGACGACTTAAACCCTGGACCCTGTTC
CCTTATCCTTTTCCCCTGATCTTTTATAATGTCAATTTCAGTTTTGAATC
TTTGTTATCGATTAGATGCTTGATTTGCACCCTGTTACGCCAGTTCCCCA
CTCTGACAAAGACGATTACGAAATTGCAATTCCATTATTGTCTCTGCAGT
CTTCTTTTAGAGTTAGTTAGAATTCAGTGACAATCTTTTTGTATTTATTT
TGTACAAATTGTATATATGATTTATGAAATTATTATTCTTTTTTCTTACT
AAAAGATTCAGATCTACGATTCGAAGAAATCGAACTCTCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039362XLOC_039362Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062839-exon-scaffold_372-1575043694:316428..316772TCONS_00062839-exon-scaffold_372-1575043694:316428..316772Clytia hemisphaericaexon
TCONS_00062839-exon-scaffold_372-1575043694:315830..316025TCONS_00062839-exon-scaffold_372-1575043694:315830..316025Clytia hemisphaericaexon
TCONS_00062839-exon-scaffold_372-1575043694:315245..315359TCONS_00062839-exon-scaffold_372-1575043694:315245..315359Clytia hemisphaericaexon
TCONS_00062839-exon-scaffold_372-1575043694:314409..314622TCONS_00062839-exon-scaffold_372-1575043694:314409..314622Clytia hemisphaericaexon
TCONS_00062839-exon-scaffold_372-1575043694:313708..313890TCONS_00062839-exon-scaffold_372-1575043694:313708..313890Clytia hemisphaericaexon
TCONS_00062839-exon-scaffold_372-1575043694:313160..313556TCONS_00062839-exon-scaffold_372-1575043694:313160..313556Clytia hemisphaericaexon
TCONS_00062839-exon-scaffold_372-1575043694:311456..311539TCONS_00062839-exon-scaffold_372-1575043694:311456..311539Clytia hemisphaericaexon
TCONS_00062839-exon-scaffold_372-1575043694:310973..311176TCONS_00062839-exon-scaffold_372-1575043694:310973..311176Clytia hemisphaericaexon
TCONS_00062839-exon-scaffold_372-1575043694:308039..308961TCONS_00062839-exon-scaffold_372-1575043694:308039..308961Clytia hemisphaericaexon
TCONS_00062839-exon-scaffold_372-1575043694:306681..307974TCONS_00062839-exon-scaffold_372-1575043694:306681..307974Clytia hemisphaericaexon
TCONS_00062839-exon-scaffold_372-1510915933:316428..316772TCONS_00062839-exon-scaffold_372-1510915933:316428..316772Clytia hemisphaericaexon
TCONS_00062839-exon-scaffold_372-1510915933:315830..316025TCONS_00062839-exon-scaffold_372-1510915933:315830..316025Clytia hemisphaericaexon
TCONS_00062839-exon-scaffold_372-1510915933:315245..315359TCONS_00062839-exon-scaffold_372-1510915933:315245..315359Clytia hemisphaericaexon
TCONS_00062839-exon-scaffold_372-1510915933:314409..314622TCONS_00062839-exon-scaffold_372-1510915933:314409..314622Clytia hemisphaericaexon
TCONS_00062839-exon-scaffold_372-1510915933:313708..313890TCONS_00062839-exon-scaffold_372-1510915933:313708..313890Clytia hemisphaericaexon
TCONS_00062839-exon-scaffold_372-1510915933:313160..313556TCONS_00062839-exon-scaffold_372-1510915933:313160..313556Clytia hemisphaericaexon
TCONS_00062839-exon-scaffold_372-1510915933:311456..311539TCONS_00062839-exon-scaffold_372-1510915933:311456..311539Clytia hemisphaericaexon
TCONS_00062839-exon-scaffold_372-1510915933:310973..311176TCONS_00062839-exon-scaffold_372-1510915933:310973..311176Clytia hemisphaericaexon
TCONS_00062839-exon-scaffold_372-1510915933:308039..308961TCONS_00062839-exon-scaffold_372-1510915933:308039..308961Clytia hemisphaericaexon
TCONS_00062839-exon-scaffold_372-1510915933:306681..307974TCONS_00062839-exon-scaffold_372-1510915933:306681..307974Clytia hemisphaericaexon
TCONS_00062839-exon-scaffold_372-1491911889:316428..316772TCONS_00062839-exon-scaffold_372-1491911889:316428..316772Clytia hemisphaericaexon
TCONS_00062839-exon-scaffold_372-1491911889:315830..316025TCONS_00062839-exon-scaffold_372-1491911889:315830..316025Clytia hemisphaericaexon
TCONS_00062839-exon-scaffold_372-1491911889:315245..315359TCONS_00062839-exon-scaffold_372-1491911889:315245..315359Clytia hemisphaericaexon
TCONS_00062839-exon-scaffold_372-1491911889:314409..314622TCONS_00062839-exon-scaffold_372-1491911889:314409..314622Clytia hemisphaericaexon
TCONS_00062839-exon-scaffold_372-1491911889:313708..313890TCONS_00062839-exon-scaffold_372-1491911889:313708..313890Clytia hemisphaericaexon
TCONS_00062839-exon-scaffold_372-1491911889:313160..313556TCONS_00062839-exon-scaffold_372-1491911889:313160..313556Clytia hemisphaericaexon
TCONS_00062839-exon-scaffold_372-1491911889:311456..311539TCONS_00062839-exon-scaffold_372-1491911889:311456..311539Clytia hemisphaericaexon
TCONS_00062839-exon-scaffold_372-1491911889:310973..311176TCONS_00062839-exon-scaffold_372-1491911889:310973..311176Clytia hemisphaericaexon
TCONS_00062839-exon-scaffold_372-1491911889:308039..308961TCONS_00062839-exon-scaffold_372-1491911889:308039..308961Clytia hemisphaericaexon
TCONS_00062839-exon-scaffold_372-1491911889:306681..307974TCONS_00062839-exon-scaffold_372-1491911889:306681..307974Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_372supercontigscaffold_372:306681..316772 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.3893	21.909	8.73171	5.78414	56.6749	45.8466	53.4119	56.8044	36.7719	40.1973	46.9566	37.2983	47.8237	54.1568	39.4828	53.7777	55.4095	64.432	39.4059	36.4927	56.3026	53.1047	32.1597	37.5778	44.0651	40.4479	39.8854	28.9265	41.0078	43.515
Blast
[Close]
BLAST of TCONS_00062839 vs. Swiss-Prot (Human)
Match: LENG8 (Leukocyte receptor cluster member 8 OS=Homo sapiens GN=LENG8 PE=1 SV=2)

HSP 1 Score: 278.87 bits (712), Expect = 4.719e-79
Identity = 147/257 (57.20%), Postives = 170/257 (66.15%), Query Frame = 2 
Query: 1343 DTEVTQKKQDRAARFQKDXXXXXXXXXXXLIPKGESPMDEDVD-MNFHINGYCQDLTKPYLRLTSAPDPSTVRPVNILKKSLEHVETQWKKKNDYHFACEQMKSIRQDLTVQGIENEFTVTVYETHARIALEKGDREEFNQCQTCLRRLYSKGINGQVAEFTAYSILYYIYTKSTLDLNSCLASLTKDLKKDALVQHALSVRSALALDNYRSFFKFYLQAPKMGGSLIDLFIARERKEALKRLVKA*VYKHPSPPLL 2110
            D E   KKQ RAARFQ    +        L          D D     I G C D+TK YLRLT APDPSTVRPV +LKKSL  V+  WK+K DY FACEQMKSIRQDLTVQGI  EFTV VYETHARIALEKGD EEFNQCQT L+ LY++ + G V EFTAY ILYYI+TK++ D+ + LA LT++LK D  V HAL++R+A AL NY  FF+ Y  AP M G L+D F  RERK ALK ++K  V      PLL
Sbjct:  465 DPERELKKQKRAARFQHGHSRRLRLEPLVLQMSSLESSGADPDWQELQIVGTCPDITKHYLRLTCAPDPSTVRPVAVLKKSLCMVKCHWKEKQDYAFACEQMKSIRQDLTVQGIRTEFTVEVYETHARIALEKGDHEEFNQCQTQLKSLYAENLPGNVGEFTAYRILYYIFTKNSGDITTELAYLTRELKADPCVAHALALRTAWALGNYHRFFRLYCHAPCMSGYLVDKFADRERKVALKAMIKTYVVPSSLLPLL 721
The following BLAST results are available for this feature:
BLAST of TCONS_00062839 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LENG84.719e-7957.20Leukocyte receptor cluster member 8 OS=Homo sapien... [more]
back to top