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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062832 ID=TCONS_00062832|Name=TCONS_00062832|organism=Clytia hemisphaerica|type=transcript|length=4272bpRun BLAST on NCBI protein sequence of TCONS_00062832-protein >TCONS_00062832-protein ID=TCONS_00062832-protein|Name=TCONS_00062832-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp KRFSNKSKYKNNIMAAPSQTQPKKKKRDDFHLGKILGEGSYSTVVLAKEHRun BLAST on NCBI transcript from alignment at scaffold_372:194975..210136- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062832 ID=TCONS_00062832|Name=TCONS_00062832|organism=Clytia hemisphaerica|type=transcript|length=15162bp|location=Sequence derived from alignment at scaffold_372:194975..210136- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_372:194975..210136- >TCONS_00062832 ID=TCONS_00062832|Name=TCONS_00062832|organism=Clytia hemisphaerica|type=CDS|length=9060bp|location=Sequence derived from alignment at scaffold_372:194975..210136- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062832 vs. Swiss-Prot (Human)
Match: PDPK2 (Putative 3-phosphoinositide-dependent protein kinase 2 OS=Homo sapiens GN=PDPK2P PE=5 SV=1) HSP 1 Score: 375.555 bits (963), Expect = 5.769e-117 Identity = 181/274 (66.06%), Postives = 219/274 (79.93%), Query Frame = 3
Query: 84 DDFHLGKILGEGSYSTVVLAKEHENGKEYAMKVLRKAHIIKEKKVPYVTREKEILAMTNHPFIVKLYFTFQDKENLYYGLSYASRGELLQYIIKLGSFDEECTKHYTAEIICAIEYLHKLGIIHRDLKPENILLSEDMHIKLADFGTAKLIKKAAKESDPPTEQDIRARSFVGTAQYVSPELLTEKTCYKSSDLWALGCILYQLLAGRPPFRAANEYLIFQKITKLEYCYPEGFPETPKDLVNKLIVIDPKERLGCEEIGGYDTLKSHEFFNGM 905
+DF GKILGEGS+STVVLA+E +EYA+K+L K HIIKE KVPYVTRE+++++ +HPF VKLYFTFQD E LY+GLSYA GELL+YI K+GSFDE CT+ YTAEI+ A+EYLH GIIHRDLKPENILL+EDM+I++ DFGTAK++ +K++ RA SFVGTAQYVSPELLTEK+ KSSDLWALGCI+YQL+AG PPFRA NEYLIFQKI KLEY +PE F +DLV KL+V+D +RLGCEE+ GY LK+H FF +
Sbjct: 53 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMYIQITDFGTAKVLSPESKQA--------RANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESV 318 The following BLAST results are available for this feature:
BLAST of TCONS_00062832 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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