|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062790 ID=TCONS_00062790|Name=TCONS_00062790|organism=Clytia hemisphaerica|type=transcript|length=960bp
tttttttaaatcttactTATTAAGTCAAGATTATGTTATATTTTCCAatc
aaaaatactcaaaaacggCATTTGACCCTATTTGTTATTCTAACTGACAG
ACAGGGGTCAAatacactgacctttatatatccctagccagctttgatcg
aagtttttgaaagttggtacccGCAATGAAGCCATTATAGTGTTTGAAGC
TTTGCCTAaggacaaacggcgctacatcattagtGTAAAAgcgaaagtag
atctagcgctctctctgcgggtaccaatttcaaaaaaactcttatcataa
tatttttcttggccagcattgagtaacttggtccagNAGACccttaaaat
ttctaaattataTTAACAGAAGTCAGCCTAATGGTAGCGCATTGTGCTCT
TGCTCTAGGGATcccgagttcgaatcgggttaGGGTCAACTTCAAAGTTT
TTCGCCAGGTTTtgatactttatttttttttgggtgaagattccgaaaaa
aggggtccgaagtcctgaaaagttgaagaGACAGCTCTACGAGGGTTGTT
GGCACCCGTACAGGACTTTACCAGACCCTCTCCCCGGGCGGCNTTGACAT
CAAATGTCTGTAGTAGATGCATTGTCCACTCAATGATAAACTATTTTGAC
ATCTTTCCCCCTGACTTCAAGCCGAATACTAGAAGCAAACTTTCAACCTT
TCCCAAGCAAGAAAATTGAGGTTTTTATATGTTGAAAACCATGTGGGCCG
CGTATCAGCTTAAATAGAATAATTGGTTTCAAATCATACAAAGGAGATTC
GTCTCTAACCTTCGGCTATATATTTTGGTCTTCCTGGTAAATTCTAACCC
AGCCTCCTCACACAGTTTAGGTATAACTatacaatctcggtcaaaatata
ttgagaattttggttaattcctcgtatttggcaatttaaagttcgggcga
gaaagtcgct Run BLAST on NCBI transcript from alignment at scaffold_372:42078..43189+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062790 ID=TCONS_00062790|Name=TCONS_00062790|organism=Clytia hemisphaerica|type=transcript|length=1112bp|location=Sequence derived from alignment at scaffold_372:42078..43189+ (Clytia hemisphaerica)
tttttttaaatcttactTATTAAGTCAAGATTATGTTATATTTTCCAatc
aaaaatactcaaaaacggCATTTGACCCTATTTGTTATTCTAACTGACAG
ACAGGGGTCAAatacactgacctttatatatccctagccagctttgatcg
aagtttttgaaagttggtacccGCAATGAAGCCATTATAGTGTTTGAAGC
TTTGCCTAaggacaaacggcgctacatcattagtGTAAAAgcgaaagtag
atctagcgctctctctgcgggtaccaatttcaaaaaaactcttatcataa
tatttttcttggccagcattgagtaacttggtccagNAGACccttaaaat
ttctaaattataTTAACAGAAGTCAGCCTAATGGTAGCGCATTGTGCTCT
TGCTCTAGGGATcccgagttcgaatcgggttaGGGTCAACTTCAAAGTTT
TTCGCCAGGTTTtgatactttatttttttttgggtgaagattccgaaaaa
aggggtccgaagtcctgaaaagttgaagaGACAGCTCTACGAGGGTTGTT
GGCACCCGTACAGGACTTTACCAGACCCTCTCCCCGGGCGGCNTTGACAT
CAAATGTCTGTAGTAGATGCATTGTCCACTCAATGATAAACTATTTTGAC
ATCTTTCCCCCTGACTTCAAGCCGAATACTAGAAGCAAACTTTCAACCTT
TCCCAAGCAAGAAAATTGAGGTTTTTATATGTTGAAAACCATGTGGGCCG
CCNTGTCAGATGTATAAAATGCagactcaaaactttttattttttttgtt
tatttcagacTCGTTGTTTTTCTAAATGCCAGAAAAACCAAAGTCAAACC
TCAGAATTGGTTTGTNATTGAGGTTTTTATATGTTGAAAACCATGTGGGC
CGCGTATCAGCTTAAATAGAATAATTGGTTTCAAATCATACAAAGGAGAT
TCGTCTCTAACCTTCGGCTATATATTTTGGTCTTCCTGGTAAATTCTAAC
CCAGCCTCCTCACACAGTTTAGGTATAACTatacaatctcggtcaaaata
tattgagaattttggttaattcctcgtatttggcaatttaaagttcgggc
gagaaagtcgct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062790-exon-scaffold_372-1491911889:42078..42797 | TCONS_00062790-exon-scaffold_372-1491911889:42078..42797 | Clytia hemisphaerica | exon |
| TCONS_00062790-exon-scaffold_372-1510915933:42078..42797 | TCONS_00062790-exon-scaffold_372-1510915933:42078..42797 | Clytia hemisphaerica | exon |
| TCONS_00062790-exon-scaffold_372-1575043694:42078..42797 | TCONS_00062790-exon-scaffold_372-1575043694:42078..42797 | Clytia hemisphaerica | exon |
| TCONS_00062790-exon-scaffold_372-1491911889:42950..43189 | TCONS_00062790-exon-scaffold_372-1491911889:42950..43189 | Clytia hemisphaerica | exon |
| TCONS_00062790-exon-scaffold_372-1510915933:42950..43189 | TCONS_00062790-exon-scaffold_372-1510915933:42950..43189 | Clytia hemisphaerica | exon |
| TCONS_00062790-exon-scaffold_372-1575043694:42950..43189 | TCONS_00062790-exon-scaffold_372-1575043694:42950..43189 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_372 | supercontig | scaffold_372:42078..43189 + |
Blast
The following BLAST results are available for this feature:
|
