TCONS_00062772 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062772
Unique NameTCONS_00062772
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2271

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062772 ID=TCONS_00062772|Name=TCONS_00062772|organism=Clytia hemisphaerica|type=transcript|length=2271bp
AATCGAGAGAGTCTGGATTCTTACACAAATACACTAATCTGATCTCAAGA
CATTttgtttgttgtctttttagGTATGAACAGAAGAAGATTGAGTGTCC
TGTTTTAAAGGAGAACTTATTTCTCCCCTTCCTCTGATGGGATCTCAATC
TCTCCTATATGCAAAACAATGAATGGAATTGTTTGGTGAAATGCACGGAG
GGTTGATGAAGGAATGAAGTCTGGTGATCGATATTCCCAAATGAAATGCA
AGATATGATTGGACAAATCAAATACATATCAGTTCAAAAGGGAGGTTATC
GCCATGTGAAGACAACAAGTCTTCTCTTGGTCAATGAATTactaaatgaa
tgaatgaatgaaacaAGCGTTCCCATCTTCATGTTACATGGATGTTGAGT
GGACGTTGTTTGAACGTACTGTGCGttggattttttgttttgtcttcCCA
TTGCTAAGGGAGATTACTGAAAACTGCCAGAGAAAGAAAAGATTAAGGAA
AGAACACCACAGAGGAATGAGAAGATTAAATCACTTTAACAAGCAGtgac
aatttcacaattttccTCCTAACTTATGCCTGCTTGtgtgttattttttt
taaatgaaaggAATATTTTTCCTGCAGCTATTGATTAGCAATACAATGAA
CTTAAATCTAACTAAAAGGAAACTGTGCTCTATATTATTAGTATTAGAGT
GTTCAAAACCCTTTTTTCCTCATAGGGGATGATAATTTCCCCTCACTACT
GTGTTTGTATATAGTAAcccgtatttttttttttaagttcacCACAATTG
CACCATAGATGAACAAGTGTCTTATTTTAAAACCTACCTATCAAATCACA
AGActaatttttcttgagtttTTTCAGCGTGTTTTAAGATTAGCTGAATT
AGATTTTCGCAATTTTCAGTTAATtctaaaatttcaactttttgactAAC
AAGCTTTCAAAGTTCAAATATTTAGTAAAACTTTGCAAAGGCTGTAACTA
AGAAGGTGCACGACGCTCACTCCCCTTATAtagattttttaaaagcatCG
TTTTTATGTAATATTGTAACTTGCAAAAGCAAAATGCGTGCAATGGTTTG
GAAGTTTTCAGGGCTGCGTAAAATATCTGTTGAATCTGTTAATATGCTTT
TGAGTTTGGACACGTccttttttctttggaaattcGTTAACGacttttaa
gtgaaaaaattttctttccactATCCATAACAATAAAAATGAAGTGCTTG
TAAAAAAAACTTCATTCCAGTAAAAGTGGACGAGCTATGGATATTTTGGA
TTAATTTTccgaaataaaacttttcagtttaacttttttgagtttttaac
aCAGTGTCCTCGAAGAGAGTTAGGCCAGCTTCCATCTCAGGCATTTTGCG
TCGTCACAGCAACGGCATCAACCATTTCTAAAAACTACTCCAATCACAAT
CTTgtacaaaatttaagaaaaccaaattttaattgagaaatgatatattt
tatttttgtatttataCTATACCAAATTTTTTCGTTTGTctgtctgtttg
tttttttaactgataAATCTACACTTTATAATCAAAGATTTTAAGTCAAT
GCTGGCTGTTCAAAGAATATGCGAATCAATCTTTTTCATATCATATAAGC
ATTCTTAGGCTTAGAATTGGGTCTGAAAGAACAACTTTTGTGCTATGCTA
ATTGCTACAAAAAATTGTCTAACAAATCAATCATCAATCATGACATTAca
gaaaattgatttgtttGAATGTACATTATTCTTTGAACACGCTttatttt
tcccaaatttttatAGTTTATGTTAGGAAGGATATATATTGATCCGTAAG
AGCTTTACCAGGCCCCCCTTCTTGCTTGAGCTGCTTTGACCTACCTTCTT
ACGGccattttttgttgttgttttcccTCTCTGAACAAGACATCTTCCCC
TATATTCCTTTaatctttgcttgtttttttttctatattagAATTTTTTA
GTATTAATAATTTTATTAGCAAGCAGTTGCACACAACTCGCCCTTTAACG
ATATGAAAATGCcaagaatttttttatacaaaCTTGACATCTGCTTGGTT
TAACTGATCAGAACAAGGTGTTGTAAAAAAACTTCATGGTATCTGTCATG
CTAAAAATGTCCATTGTTAAATCCTAAAATCAtttgtaataataataatt
atgatATTATTTGAGAAAGAGAAAATCTCAATTAAAGTCATGTGACAGGT
TcacaatgacgtcatgaaaTG
Run BLAST on NCBI

transcript from alignment at scaffold_371:286960..289230

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062772 ID=TCONS_00062772|Name=TCONS_00062772|organism=Clytia hemisphaerica|type=transcript|length=2271bp|location=Sequence derived from alignment at scaffold_371:286960..289230 (Clytia hemisphaerica)
CAtttcatgacgtcattgtgAACCTGTCACATGACTTTAATTGAGATTTT CTCTTTCTCAAATAATatcataattattattattacaaaTGATTTTAGGA TTTAACAATGGACATTTTTAGCATGACAGATACCATGAAGTTTTTTTACA ACACCTTGTTCTGATCAGTTAAACCAAGCAGATGTCAAGtttgtataaaa aaattcttgGCATTTTCATATCGTTAAAGGGCGAGTTGTGTGCAACTGCT TGCTAATAAAATTATTAATACTAAAAAATTctaatatagaaaaaaaaaca agcaaagattAAAGGAATATAGGGGAAGATGTCTTGTTCAGAGAgggaaa acaacaacaaaaaatggCCGTAAGAAGGTAGGTCAAAGCAGCTCAAGCAA GAAGGGGGGCCTGGTAAAGCTCTTACGGATCAATATATATCCTTCCTAAC ATAAACTataaaaatttgggaaaaataaAGCGTGTTCAAAGAATAATGTA CATTCaaacaaatcaattttctgTAATGTCATGATTGATGATTGATTTGT TAGACAATTTTTTGTAGCAATTAGCATAGCACAAAAGTTGTTCTTTCAGA CCCAATTCTAAGCCTAAGAATGCTTATATGATATGAAAAAGATTGATTCG CATATTCTTTGAACAGCCAGCATTGACTTAAAATCTTTGATTATAAAGTG TAGATTtatcagttaaaaaaacaaacagacagACAAACGAAAAAATTTGG TATAGtataaatacaaaaataaaatatatcatttctcaattaaaatttgg ttttcttaaattttgtacAAGATTGTGATTGGAGTAGTTTTTAGAAATGG TTGATGCCGTTGCTGTGACGACGCAAAATGCCTGAGATGGAAGCTGGCCT AACTCTCTTCGAGGACACTGtgttaaaaactcaaaaaagttaaactgaaa agttttatttcggAAAATTAATCCAAAATATCCATAGCTCGTCCACTTTT ACTGGAATGAAGTTTTTTTTACAAGCACTTCATTTTTATTGTTATGGATa gtggaaagaaaattttttcacttaaaagtCGTTAACgaatttccaaagaa aaaaggACGTGTCCAAACTCAAAAGCATATTAACAGATTCAACAGATATT TTACGCAGCCCTGAAAACTTCCAAACCATTGCACGCATTTTGCTTTTGCA AGTTACAATATTACATAAAAACGatgcttttaaaaaatctaTATAAGGGG AGTGAGCGTCGTGCACCTTCTTAGTTACAGCCTTTGCAAAGTTTTACTAA ATATTTGAACTTTGAAAGCTTGTTagtcaaaaagttgaaattttagaATT AACTGAAAATTGCGAAAATCTAATTCAGCTAATCTTAAAACACGCTGAAA aaactcaagaaaaattagTCTTGTGATTTGATAGGTAGGTTTTAAAATAA GACACTTGTTCATCTATGGTGCAATTGTGgtgaacttaaaaaaaaaaata cgggTTACTATATACAAACACAGTAGTGAGGGGAAATTATCATCCCCTAT GAGGAAAAAAGGGTTTTGAACACTCTAATACTAATAATATAGAGCACAGT TTCCTTTTAGTTAGATTTAAGTTCATTGTATTGCTAATCAATAGCTGCAG GAAAAATATTcctttcatttaaaaaaaataacacaCAAGCAGGCATAAGT TAGGAggaaaattgtgaaattgtcaCTGCTTGTTAAAGTGATTTAATCTT CTCATTCCTCTGTGGTGTTCTTTCCTTAATCTTTTCTTTCTCTGGCAGTT TTCAGTAATCTCCCTTAGCAATGGgaagacaaaacaaaaaatccaaCGCA CAGTACGTTCAAACAACGTCCACTCAACATCCATGTAACATGAAGATGGG AACGCTtgtttcattcattcattcatttagtAATTCATTGACCAAGAGAA GACTTGTTGTCTTCACATGGCGATAACCTCCCTTTTGAACTGATATGTAT TTGATTTGTCCAATCATATCTTGCATTTCATTTGGGAATATCGATCACCA GACTTCATTCCTTCATCAACCCTCCGTGCATTTCACCAAACAATTCCATT CATTGTTTTGCATATAGGAGAGATTGAGATCCCATCAGAGGAAGGGGAGA AATAAGTTCTCCTTTAAAACAGGACACTCAATCTTCTTCTGTTCATACct aaaaagacaacaaacaaAATGTCTTGAGATCAGATTAGTGTATTTGTGTA AGAATCCAGACTCTCTCGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039322XLOC_039322Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062772-exon-scaffold_371-1491911889:286960..289230TCONS_00062772-exon-scaffold_371-1491911889:286960..289230Clytia hemisphaericaexon
TCONS_00062772-exon-scaffold_371-1510915933:286960..289230TCONS_00062772-exon-scaffold_371-1510915933:286960..289230Clytia hemisphaericaexon
TCONS_00062772-exon-scaffold_371-1575043694:286960..289230TCONS_00062772-exon-scaffold_371-1575043694:286960..289230Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_371supercontigscaffold_371:286960..289230 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.03025 2.0637 0.681833 0.571772 32.8549 22.662 24.0006 28.3711 17.326 17.2766 14.9911 16.386 25.3116 28.1282 11.5675 11.3128 16.9201 19.5799 33.5253 33.4167 35.2834 34.0305 14.9337 17.9352 15.8866 23.3614 30.4103 31.6993 16.6715 17.8806
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062772 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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