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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062772 ID=TCONS_00062772|Name=TCONS_00062772|organism=Clytia hemisphaerica|type=transcript|length=2271bp
AATCGAGAGAGTCTGGATTCTTACACAAATACACTAATCTGATCTCAAGA
CATTttgtttgttgtctttttagGTATGAACAGAAGAAGATTGAGTGTCC
TGTTTTAAAGGAGAACTTATTTCTCCCCTTCCTCTGATGGGATCTCAATC
TCTCCTATATGCAAAACAATGAATGGAATTGTTTGGTGAAATGCACGGAG
GGTTGATGAAGGAATGAAGTCTGGTGATCGATATTCCCAAATGAAATGCA
AGATATGATTGGACAAATCAAATACATATCAGTTCAAAAGGGAGGTTATC
GCCATGTGAAGACAACAAGTCTTCTCTTGGTCAATGAATTactaaatgaa
tgaatgaatgaaacaAGCGTTCCCATCTTCATGTTACATGGATGTTGAGT
GGACGTTGTTTGAACGTACTGTGCGttggattttttgttttgtcttcCCA
TTGCTAAGGGAGATTACTGAAAACTGCCAGAGAAAGAAAAGATTAAGGAA
AGAACACCACAGAGGAATGAGAAGATTAAATCACTTTAACAAGCAGtgac
aatttcacaattttccTCCTAACTTATGCCTGCTTGtgtgttattttttt
taaatgaaaggAATATTTTTCCTGCAGCTATTGATTAGCAATACAATGAA
CTTAAATCTAACTAAAAGGAAACTGTGCTCTATATTATTAGTATTAGAGT
GTTCAAAACCCTTTTTTCCTCATAGGGGATGATAATTTCCCCTCACTACT
GTGTTTGTATATAGTAAcccgtatttttttttttaagttcacCACAATTG
CACCATAGATGAACAAGTGTCTTATTTTAAAACCTACCTATCAAATCACA
AGActaatttttcttgagtttTTTCAGCGTGTTTTAAGATTAGCTGAATT
AGATTTTCGCAATTTTCAGTTAATtctaaaatttcaactttttgactAAC
AAGCTTTCAAAGTTCAAATATTTAGTAAAACTTTGCAAAGGCTGTAACTA
AGAAGGTGCACGACGCTCACTCCCCTTATAtagattttttaaaagcatCG
TTTTTATGTAATATTGTAACTTGCAAAAGCAAAATGCGTGCAATGGTTTG
GAAGTTTTCAGGGCTGCGTAAAATATCTGTTGAATCTGTTAATATGCTTT
TGAGTTTGGACACGTccttttttctttggaaattcGTTAACGacttttaa
gtgaaaaaattttctttccactATCCATAACAATAAAAATGAAGTGCTTG
TAAAAAAAACTTCATTCCAGTAAAAGTGGACGAGCTATGGATATTTTGGA
TTAATTTTccgaaataaaacttttcagtttaacttttttgagtttttaac
aCAGTGTCCTCGAAGAGAGTTAGGCCAGCTTCCATCTCAGGCATTTTGCG
TCGTCACAGCAACGGCATCAACCATTTCTAAAAACTACTCCAATCACAAT
CTTgtacaaaatttaagaaaaccaaattttaattgagaaatgatatattt
tatttttgtatttataCTATACCAAATTTTTTCGTTTGTctgtctgtttg
tttttttaactgataAATCTACACTTTATAATCAAAGATTTTAAGTCAAT
GCTGGCTGTTCAAAGAATATGCGAATCAATCTTTTTCATATCATATAAGC
ATTCTTAGGCTTAGAATTGGGTCTGAAAGAACAACTTTTGTGCTATGCTA
ATTGCTACAAAAAATTGTCTAACAAATCAATCATCAATCATGACATTAca
gaaaattgatttgtttGAATGTACATTATTCTTTGAACACGCTttatttt
tcccaaatttttatAGTTTATGTTAGGAAGGATATATATTGATCCGTAAG
AGCTTTACCAGGCCCCCCTTCTTGCTTGAGCTGCTTTGACCTACCTTCTT
ACGGccattttttgttgttgttttcccTCTCTGAACAAGACATCTTCCCC
TATATTCCTTTaatctttgcttgtttttttttctatattagAATTTTTTA
GTATTAATAATTTTATTAGCAAGCAGTTGCACACAACTCGCCCTTTAACG
ATATGAAAATGCcaagaatttttttatacaaaCTTGACATCTGCTTGGTT
TAACTGATCAGAACAAGGTGTTGTAAAAAAACTTCATGGTATCTGTCATG
CTAAAAATGTCCATTGTTAAATCCTAAAATCAtttgtaataataataatt
atgatATTATTTGAGAAAGAGAAAATCTCAATTAAAGTCATGTGACAGGT
TcacaatgacgtcatgaaaTG Run BLAST on NCBI transcript from alignment at scaffold_371:286960..289230 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062772 ID=TCONS_00062772|Name=TCONS_00062772|organism=Clytia hemisphaerica|type=transcript|length=2271bp|location=Sequence derived from alignment at scaffold_371:286960..289230 (Clytia hemisphaerica)
CAtttcatgacgtcattgtgAACCTGTCACATGACTTTAATTGAGATTTT
CTCTTTCTCAAATAATatcataattattattattacaaaTGATTTTAGGA
TTTAACAATGGACATTTTTAGCATGACAGATACCATGAAGTTTTTTTACA
ACACCTTGTTCTGATCAGTTAAACCAAGCAGATGTCAAGtttgtataaaa
aaattcttgGCATTTTCATATCGTTAAAGGGCGAGTTGTGTGCAACTGCT
TGCTAATAAAATTATTAATACTAAAAAATTctaatatagaaaaaaaaaca
agcaaagattAAAGGAATATAGGGGAAGATGTCTTGTTCAGAGAgggaaa
acaacaacaaaaaatggCCGTAAGAAGGTAGGTCAAAGCAGCTCAAGCAA
GAAGGGGGGCCTGGTAAAGCTCTTACGGATCAATATATATCCTTCCTAAC
ATAAACTataaaaatttgggaaaaataaAGCGTGTTCAAAGAATAATGTA
CATTCaaacaaatcaattttctgTAATGTCATGATTGATGATTGATTTGT
TAGACAATTTTTTGTAGCAATTAGCATAGCACAAAAGTTGTTCTTTCAGA
CCCAATTCTAAGCCTAAGAATGCTTATATGATATGAAAAAGATTGATTCG
CATATTCTTTGAACAGCCAGCATTGACTTAAAATCTTTGATTATAAAGTG
TAGATTtatcagttaaaaaaacaaacagacagACAAACGAAAAAATTTGG
TATAGtataaatacaaaaataaaatatatcatttctcaattaaaatttgg
ttttcttaaattttgtacAAGATTGTGATTGGAGTAGTTTTTAGAAATGG
TTGATGCCGTTGCTGTGACGACGCAAAATGCCTGAGATGGAAGCTGGCCT
AACTCTCTTCGAGGACACTGtgttaaaaactcaaaaaagttaaactgaaa
agttttatttcggAAAATTAATCCAAAATATCCATAGCTCGTCCACTTTT
ACTGGAATGAAGTTTTTTTTACAAGCACTTCATTTTTATTGTTATGGATa
gtggaaagaaaattttttcacttaaaagtCGTTAACgaatttccaaagaa
aaaaggACGTGTCCAAACTCAAAAGCATATTAACAGATTCAACAGATATT
TTACGCAGCCCTGAAAACTTCCAAACCATTGCACGCATTTTGCTTTTGCA
AGTTACAATATTACATAAAAACGatgcttttaaaaaatctaTATAAGGGG
AGTGAGCGTCGTGCACCTTCTTAGTTACAGCCTTTGCAAAGTTTTACTAA
ATATTTGAACTTTGAAAGCTTGTTagtcaaaaagttgaaattttagaATT
AACTGAAAATTGCGAAAATCTAATTCAGCTAATCTTAAAACACGCTGAAA
aaactcaagaaaaattagTCTTGTGATTTGATAGGTAGGTTTTAAAATAA
GACACTTGTTCATCTATGGTGCAATTGTGgtgaacttaaaaaaaaaaata
cgggTTACTATATACAAACACAGTAGTGAGGGGAAATTATCATCCCCTAT
GAGGAAAAAAGGGTTTTGAACACTCTAATACTAATAATATAGAGCACAGT
TTCCTTTTAGTTAGATTTAAGTTCATTGTATTGCTAATCAATAGCTGCAG
GAAAAATATTcctttcatttaaaaaaaataacacaCAAGCAGGCATAAGT
TAGGAggaaaattgtgaaattgtcaCTGCTTGTTAAAGTGATTTAATCTT
CTCATTCCTCTGTGGTGTTCTTTCCTTAATCTTTTCTTTCTCTGGCAGTT
TTCAGTAATCTCCCTTAGCAATGGgaagacaaaacaaaaaatccaaCGCA
CAGTACGTTCAAACAACGTCCACTCAACATCCATGTAACATGAAGATGGG
AACGCTtgtttcattcattcattcatttagtAATTCATTGACCAAGAGAA
GACTTGTTGTCTTCACATGGCGATAACCTCCCTTTTGAACTGATATGTAT
TTGATTTGTCCAATCATATCTTGCATTTCATTTGGGAATATCGATCACCA
GACTTCATTCCTTCATCAACCCTCCGTGCATTTCACCAAACAATTCCATT
CATTGTTTTGCATATAGGAGAGATTGAGATCCCATCAGAGGAAGGGGAGA
AATAAGTTCTCCTTTAAAACAGGACACTCAATCTTCTTCTGTTCATACct
aaaaagacaacaaacaaAATGTCTTGAGATCAGATTAGTGTATTTGTGTA
AGAATCCAGACTCTCTCGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062772-exon-scaffold_371-1491911889:286960..289230 | TCONS_00062772-exon-scaffold_371-1491911889:286960..289230 | Clytia hemisphaerica | exon |
| TCONS_00062772-exon-scaffold_371-1510915933:286960..289230 | TCONS_00062772-exon-scaffold_371-1510915933:286960..289230 | Clytia hemisphaerica | exon |
| TCONS_00062772-exon-scaffold_371-1575043694:286960..289230 | TCONS_00062772-exon-scaffold_371-1575043694:286960..289230 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_371 | supercontig | scaffold_371:286960..289230 . |
Blast
The following BLAST results are available for this feature:
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