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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062766 ID=TCONS_00062766|Name=TCONS_00062766|organism=Clytia hemisphaerica|type=transcript|length=3395bp
cgcaaaaattttccaaatattagATACCCCCTCCCTCCATGTActcagag
aacaatagaaatgacgtcatttaaacaataaacgtacgcttttgctaaac
ccccttctccccccttcactgtgtacTTACTAATGGATGCCCCCTTTGCA
GCCGCTGTTTGGATTAAATTTCTTGAATATGCACAAActcaattttgaaa
ttgatttgtacaaaaaattgttaggcaaaatacatgttttttataagcat
atagaTATCCAAAAACAGGCTCGGAGATGTTTAGGTCGAGAGCTTTGCAA
GACTGAAATAATGCTTGAGAGGTGCTTACAAAGTGAAGTGAAGTGAATCA
GGCTCAAAATATGCTCAAATTTGCCTTTTAGAATTCTTGGCTGAGttata
aaaaattttatatttcattttgaaatttcaaaaaatgagtctttacacag
tctttacgttgaatttctattgttttcaagcaaaagttgaacatttcaaa
atcaaatatttttgctttgggAAATCATTGGGTCAAAAATTTGGAGGTCT
TTCTCAGGACCATATAAGGTTTCTGTAGGCCAAATATNATCAAATATTTC
TGCTTTGGGAAATCGGTCAAAAATTTGGAGGTCTTTCTCAGGACCATATA
AGGTTTCTGTAGGCCAAATATCTAAAACTATCTGATTAtccttttaaaaa
ttaattttcatggAAACATAATTTCTTTACAGAAGTAATAACCATCTGTG
AAAAAATGTCTTTGAATTTTAATCAAGTGGTGTACATGCTGTTAAATCTA
AGAATAAtacaatatcaaaagaaaagtttctaattttcctatttcaaaat
ttcaagatttcaaaatttcaacctattacaaaattacaatactccgaaaa
tggttgaaatataGTATGCCTAAATAATTGAATGTTACTTCTAGGTAAGA
AAGATAATGACCCTATAAGAAGCAAATATTGACTCATCAGACCTTTTGAg
ttcaaaaagaaattcttgTCTTGGCtttggaaaaagaaaactttcggATG
AGGTGCTTGGTTAAGAAAATAAGAAtgtgaaaattaaattaaaaaatacc
gTTTAAACAAATGATACGTTAGTGTAGAGAAAATACAAAGATACGTCTTA
AACTTTATAAAAGAAATTACGTTTAGTTTAAGTATAACTATActaaaatg
tttgtttacaattCATCACGTTTCCCTTCTGTGGAGTAGTCTTCACATTT
TGTGCATTCTTCATCTTGACATTTTGTGAAAGGTGGGCATTTGGGTGCAT
CTCCTCCTCTCGAACATCGAACAATCTTGGCATCCCATGCCAAATCATTC
TTCTGCACGTCTGTGGTGGTCACATACAGTTGCCACATGCAGCCTCCTTT
CCACGGGTTTCTGTTTTCATAATAATCACACGAAAATGAGGTTTTGGTCG
TCTGCTCATGCGTGCTGCTCCACGTGTAGGCAACAGATGCAGCCACGCTG
GCGGAAGCTTTCATGTCAACAAAGATGAGATTTGCTTCGATGGCCAGTTC
GACTCCCACAGAAACTTGACTTGTAACTTCGTTGGTATAGGAGACGGTGT
TGTCGATTTCGTATGTTACTGCGCCGTCTAAATTGCAGGAGATTTGGCGC
CATTGTGAAGTCGGGGAGACCCAGTCTTCCGTAACCCATTCGAACCGTTG
GTCTGGAACACCTTGGCATTGATACAAGTCGATGTCACCGGTCCCATCAT
TGCCTTCTACATCCAAGCATTTGCTGGTCTGCTTGCTCATGAATGCGAGG
TAGTTACCATCTGCATATTGCGATGGTGTTGACCACATTTGATCCGTTTG
CTCAGCACACTCATAGGTTTGTACGCTTTCAGCAGAATCACCGCTACCAT
CTGGATCCATACACGTGTTTGATGCCATGTTCACAACCTCGCCGTTCTCG
TAATGCGTCCAGTATTGCTTTCGGCTATCAGTGCATGGTGTGGTGTGTAT
GTTTGAATTCCAACCAGTGTTATCAGCTGTCGCACACTGTCctgatttct
gatttctcaACCGTCCAGAATTGACTACTTTCCCTCGGTTGCGGAAGTAG
AAAAATTGGTCATCGCTATTCTGGCAATTATAGATAGCGATATTACCGTG
GCCCCCTGAAGCATTGACGTCGACACAAAGGTTGGATTTGACGTTCTTGT
ACTCGTAACCAGTCTGTTTTATTCCACTGGCGTCAGTGTAGGATCGACTT
CcaccagttttgaatttttgataatCAGGAACAGATGGGTAAAGTTCACA
AGGTTGAAATGTCAAATCTCCAGTGCCAGCTCCAGTATTGCTTGGTGTTA
AACAGTAGTTTTTTGCCATGTTTCTGATCGTGCCATCATTGCAAGCAATG
ATTTGCTGGTCTGGTCTTCCGTCACATGTCCATGTCTGGACCTCTCCGCT
GCCAGTGTCGTCAGTGTCCATGCATACTTGAGACAGCATATTGCGCAATT
CTCCAATGTGCAATGCAGACGGACAATTAGCATCGCCGTGCGCCAAATAA
ATGGCTGAAGCGAGAATCATGAAGACTGCAAACATTTTGATGTGTTTGTA
GAGAGTGGGGTTGTTAACgccttttttagatttttatacaGTCCTCACGG
AGAACTGGTTTGCTACGCTTCATTAATTTTTTGGGAGTAATTCAGACATC
GTGGTCAAACGACCTGCCGCAACAGACAATCGTTATTACAGCTTAGTTAA
ACCGTCGTCTGACCAAGGATCAGACTTGATTGGTTTACAGTGTGCAAACT
TATTATTGTAATGAATACACTTTAATAATCTAATCACCCGTAATTAAGTC
TGAAATAAATTTAGCAAttaaatcataaatcataaatgTGCAATTAGAGA
GGCAAATTCTGTCTAGAAATATCGTACGATGGTAATCAGCGAAGAAATAG
TATTTCAAGATCAAGGTCCATTTTAATGTCCGAGTATTACAAGCATCTAT
ATTGCATTTGCTAGCGCTccgttatgcaaacgtcataattatttcatttt
acatttGACTGACAAATTTTAATCCCACAATCCTATTCGTCTTGATTTCA
AATCCATGAATgttgttaaaatcttttgttaTTGAGTGTAATTAACGTGC
AAGAGACAAAGATTCATGGGATTGAAACTCGGAAAAACAGAAATtgtgtc
tatttttagattcgttGCGATATCCTATTtaaaagagccccccccctccc
agcggcacccctaatcacgctatcacgcaaaaagaaattctcaatcaggc
atcacgaaaatcgctaaaatttgtcatcacgcaaaaaatagcgaaaaata
gcccaaatcacgcatcacgcctcaaatttttgccctatcacgcat Run BLAST on NCBI protein sequence of TCONS_00062766-protein >TCONS_00062766-protein ID=TCONS_00062766-protein|Name=TCONS_00062766-protein|organism=Clytia hemisphaerica|type=polypeptide|length=459bp
MFAVFMILASAIYLAHGDANCPSALHIGELRNMLSQVCMDTDDTGSGEVQ
TWTCDGRPDQQIIACNDGTIRNMAKNYCLTPSNTGAGTGDLTFQPCELYP
SVPDYQKFKTGGSRSYTDASGIKQTGYEYKNVKSNLCVDVNASGGHGNIA
IYNCQNSDDQFFYFRNRGKVVNSGRLRNQKSGQCATADNTGWNSNIHTTP
CTDSRKQYWTHYENGEVVNMASNTCMDPDGSGDSAESVQTYECAEQTDQM
WSTPSQYADGNYLAFMSKQTSKCLDVEGNDGTGDIDLYQCQGVPDQRFEW
VTEDWVSPTSQWRQISCNLDGAVTYEIDNTVSYTNEVTSQVSVGVELAIE
ANLIFVDMKASASVAASVAYTWSSTHEQTTKTSFSCDYYENRNPWKGGCM
WQLYVTTTDVQKNDLAWDAKIVRCSRGGDAPKCPPFTKCQDEECTKCEDY
STEGKRDEL Run BLAST on NCBI transcript from alignment at scaffold_371:96699..100093 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062766 ID=TCONS_00062766|Name=TCONS_00062766|organism=Clytia hemisphaerica|type=transcript|length=3395bp|location=Sequence derived from alignment at scaffold_371:96699..100093 (Clytia hemisphaerica)
atgcgtgatagggcaaaaatttgaggcgtgatgcgtgatttgggctattt
ttcgctattttttgcgtgatgacaaattttagcgattttcgtgatgcctg
attgagaatttctttttgcgtgatagcgtgattaggggtgccgctgggag
ggggggggctcttttaAATAGGATATCGCaacgaatctaaaaatagacac
aATTTCTGTTTTTCCGAGTTTCAATCCCATGAATCTTTGTCTCTTGCACG
TTAATTACACTCAAtaacaaaagattttaacaacATTCATGGATTTGAAA
TCAAGACGAATAGGATTGTGGGATTAAAATTTGTCAGTCaaatgtaaaat
gaaataattatgacgtttgcataacggAGCGCTAGCAAATGCAATATAGA
TGCTTGTAATACTCGGACATTAAAATGGACCTTGATCTTGAAATACTATT
TCTTCGCTGATTACCATCGTACGATATTTCTAGACAGAATTTGCCTCTCT
AATTGCAcatttatgatttatgatttaaTTGCTAAATTTATTTCAGACTT
AATTACGGGTGATTAGATTATTAAAGTGTATTCATTACAATAATAAGTTT
GCACACTGTAAACCAATCAAGTCTGATCCTTGGTCAGACGACGGTTTAAC
TAAGCTGTAATAACGATTGTCTGTTGCGGCAGGTCGTTTGACCACGATGT
CTGAATTACTCCCAAAAAATTAATGAAGCGTAGCAAACCAGTTCTCCGTG
AGGACtgtataaaaatctaaaaaaggcGTTAACAACCCCACTCTCTACAA
ACACATCAAAATGTTTGCAGTCTTCATGATTCTCGCTTCAGCCATTTATT
TGGCGCACGGCGATGCTAATTGTCCGTCTGCATTGCACATTGGAGAATTG
CGCAATATGCTGTCTCAAGTATGCATGGACACTGACGACACTGGCAGCGG
AGAGGTCCAGACATGGACATGTGACGGAAGACCAGACCAGCAAATCATTG
CTTGCAATGATGGCACGATCAGAAACATGGCAAAAAACTACTGTTTAACA
CCAAGCAATACTGGAGCTGGCACTGGAGATTTGACATTTCAACCTTGTGA
ACTTTACCCATCTGTTCCTGattatcaaaaattcaaaactggtgGAAGTC
GATCCTACACTGACGCCAGTGGAATAAAACAGACTGGTTACGAGTACAAG
AACGTCAAATCCAACCTTTGTGTCGACGTCAATGCTTCAGGGGGCCACGG
TAATATCGCTATCTATAATTGCCAGAATAGCGATGACCAATTTTTCTACT
TCCGCAACCGAGGGAAAGTAGTCAATTCTGGACGGTtgagaaatcagaaa
tcagGACAGTGTGCGACAGCTGATAACACTGGTTGGAATTCAAACATACA
CACCACACCATGCACTGATAGCCGAAAGCAATACTGGACGCATTACGAGA
ACGGCGAGGTTGTGAACATGGCATCAAACACGTGTATGGATCCAGATGGT
AGCGGTGATTCTGCTGAAAGCGTACAAACCTATGAGTGTGCTGAGCAAAC
GGATCAAATGTGGTCAACACCATCGCAATATGCAGATGGTAACTACCTCG
CATTCATGAGCAAGCAGACCAGCAAATGCTTGGATGTAGAAGGCAATGAT
GGGACCGGTGACATCGACTTGTATCAATGCCAAGGTGTTCCAGACCAACG
GTTCGAATGGGTTACGGAAGACTGGGTCTCCCCGACTTCACAATGGCGCC
AAATCTCCTGCAATTTAGACGGCGCAGTAACATACGAAATCGACAACACC
GTCTCCTATACCAACGAAGTTACAAGTCAAGTTTCTGTGGGAGTCGAACT
GGCCATCGAAGCAAATCTCATCTTTGTTGACATGAAAGCTTCCGCCAGCG
TGGCTGCATCTGTTGCCTACACGTGGAGCAGCACGCATGAGCAGACGACC
AAAACCTCATTTTCGTGTGATTATTATGAAAACAGAAACCCGTGGAAAGG
AGGCTGCATGTGGCAACTGTATGTGACCACCACAGACGTGCAGAAGAATG
ATTTGGCATGGGATGCCAAGATTGTTCGATGTTCGAGAGGAGGAGATGCA
CCCAAATGCCCACCTTTCACAAAATGTCAAGATGAAGAATGCACAAAATG
TGAAGACTACTCCACAGAAGGGAAACGTGATGaattgtaaacaaacattt
tagTATAGTTATACTTAAACTAAACGTAATTTCTTTTATAAAGTTTAAGA
CGTATCTTTGTATTTTCTCTACACTAACGTATCATTTGTTTAAAcggtat
tttttaatttaattttcacaTTCTTATTTTCTTAACCAAGCACCTCATcc
gaaagttttctttttccaaaGCCAAGAcaagaatttctttttgaacTCAA
AAGGTCTGATGAGTCAATATTTGCTTCTTATAGGGTCATTATCTTTCTTA
CCTAGAAGTAACATTCAATTATTTAGGCATACtatatttcaaccattttc
ggagtattgtaattttgtaataggttgaaattttgaaatcttgaaatttt
gaaataggaaaattagaaacttttcttttgatattgtaTTATTCTTAGAT
TTAACAGCATGTACACCACTTGATTAAAATTCAAAGACATTTTTTCACAG
ATGGTTATTACTTCTGTAAAGAAATTATGTTTccatgaaaattaattttt
aaaaggaTAATCAGATAGTTTTAGATATTTGGCCTACAGAAACCTTATAT
GGTCCTGAGAAAGACCTCCAAATTTTTGACCGATTTCCCAAAGCAGAAAT
ATTTGATNATATTTGGCCTACAGAAACCTTATATGGTCCTGAGAAAGACC
TCCAAATTTTTGACCCAATGATTTcccaaagcaaaaatatttgattttga
aatgttcaacttttgcttgaaaacaatagaaattcaacgtaaagactgtg
taaagactcattttttgaaatttcaaaatgaaatataaaattttttataa
CTCAGCCAAGAATTCTAAAAGGCAAATTTGAGCATATTTTGAGCCTGATT
CACTTCACTTCACTTTGTAAGCACCTCTCAAGCATTATTTCAGTCTTGCA
AAGCTCTCGACCTAAACATCTCCGAGCCTGTTTTTGGATAtctatatgct
tataaaaaacatgtattttgcctaacaattttttgtacaaatcaatttca
aaattgagTTTGTGCATATTCAAGAAATTTAATCCAAACAGCGGCTGCAA
AGGGGGCATCCATTAGTAAgtacacagtgaaggggggagaagggggttta
gcaaaagcgtacgtttattgtttaaatgacgtcatttctattgttctctg
agTACATGGAGGGAGGGGGTATctaatatttggaaaatttttgcg Coding sequence (CDS) from alignment at scaffold_371:96699..100093 >TCONS_00062766 ID=TCONS_00062766|Name=TCONS_00062766|organism=Clytia hemisphaerica|type=CDS|length=1380bp|location=Sequence derived from alignment at scaffold_371:96699..100093 (Clytia hemisphaerica)
ATGTTTGCAGTCTTCATGATTCTCGCTTCAGCCATTTATTTGGCGCACGG
CGATGCTAATTGTCCGTCTGCATTGCACATTGGAGAATTGCGCAATATGC
TGTCTCAAGTATGCATGGACACTGACGACACTGGCAGCGGAGAGGTCCAG
ACATGGACATGTGACGGAAGACCAGACCAGCAAATCATTGCTTGCAATGA
TGGCACGATCAGAAACATGGCAAAAAACTACTGTTTAACACCAAGCAATA
CTGGAGCTGGCACTGGAGATTTGACATTTCAACCTTGTGAACTTTACCCA
TCTGTTCCTGattatcaaaaattcaaaactggtgGAAGTCGATCCTACAC
TGACGCCAGTGGAATAAAACAGACTGGTTACGAGTACAAGAACGTCAAAT
CCAACCTTTGTGTCGACGTCAATGCTTCAGGGGGCCACGGTAATATCGCT
ATCTATAATTGCCAGAATAGCGATGACCAATTTTTCTACTTCCGCAACCG
AGGGAAAGTAGTCAATTCTGGACGGTtgagaaatcagaaatcagGACAGT
GTGCGACAGCTGATAACACTGGTTGGAATTCAAACATACACACCACACCA
TGCACTGATAGCCGAAAGCAATACTGGACGCATTACGAGAACGGCGAGGT
TGTGAACATGGCATCAAACACGTGTATGGATCCAGATGGTAGCGGTGATT
CTGCTGAAAGCGTACAAACCTATGAGTGTGCTGAGCAAACGGATCAAATG
TGGTCAACACCATCGCAATATGCAGATGGTAACTACCTCGCATTCATGAG
CAAGCAGACCAGCAAATGCTTGGATGTAGAAGGCAATGATGGGACCGGTG
ACATCGACTTGTATCAATGCCAAGGTGTTCCAGACCAACGGTTCGAATGG
GTTACGGAAGACTGGGTCTCCCCGACTTCACAATGGCGCCAAATCTCCTG
CAATTTAGACGGCGCAGTAACATACGAAATCGACAACACCGTCTCCTATA
CCAACGAAGTTACAAGTCAAGTTTCTGTGGGAGTCGAACTGGCCATCGAA
GCAAATCTCATCTTTGTTGACATGAAAGCTTCCGCCAGCGTGGCTGCATC
TGTTGCCTACACGTGGAGCAGCACGCATGAGCAGACGACCAAAACCTCAT
TTTCGTGTGATTATTATGAAAACAGAAACCCGTGGAAAGGAGGCTGCATG
TGGCAACTGTATGTGACCACCACAGACGTGCAGAAGAATGATTTGGCATG
GGATGCCAAGATTGTTCGATGTTCGAGAGGAGGAGATGCACCCAAATGCC
CACCTTTCACAAAATGTCAAGATGAAGAATGCACAAAATGTGAAGACTAC
TCCACAGAAGGGAAACGTGATGaattgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062766-exon-scaffold_371-1491911889:96699..100093 | TCONS_00062766-exon-scaffold_371-1491911889:96699..100093 | Clytia hemisphaerica | exon |
| TCONS_00062766-exon-scaffold_371-1510915933:96699..100093 | TCONS_00062766-exon-scaffold_371-1510915933:96699..100093 | Clytia hemisphaerica | exon |
| TCONS_00062766-exon-scaffold_371-1575043694:96699..100093 | TCONS_00062766-exon-scaffold_371-1575043694:96699..100093 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_371 | supercontig | scaffold_371:96699..100093 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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