TCONS_00062719 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062719
Unique NameTCONS_00062719
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1696

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062719 ID=TCONS_00062719|Name=TCONS_00062719|organism=Clytia hemisphaerica|type=transcript|length=1696bp
AGACAAAGACAGGGAAACATACTATATAGcgacaataaaagagatttttg
atAGGTTTTCTCCacaaaaaggctgtttttaccacaATTTTAGTTATTTC
AAGAGCGTAAAAAAAAgcatgaaaatttttctaaaattggaTTTAATTTA
AGTCCAAATTTTCGGAAATCATGACCTGGTAATTTGGTTTGTTGTAACCC
TAAAGATTTCTGAAATATCTTGTCCTTTAAGTTATCCCTAGGAGTAAAAG
GATTTATAATGTGTTCCTATATGGTATGGCGATGTAGGATCCGGCTTAAT
GGTTCAAATCCTGTATACTCAGATAAATCTACTATTTTATTACATTGTTA
AACCATATCTCAAAAGCTTCagcagttttcattttttccttaATTTCTTT
ATGTTTAAAGCTGAAAAATACAGGTCAATTTTTCCATTTGCATACTTCAA
TGCATTGCAGTCTAAAGTTTTTGATGAGGTAATCATAGATTTATTTTGAA
GTGCATGGAGATTTCTCAATGTGTTCTCAAACGTCAGAAGTACTTTCAGA
ACTTTATGTTGCATTACTCTATTAGAAGGAGTAGAGGCTGCTCTATATGG
CTGACTTGGACGTAATTTAAAATAACAGACTAATTTGAAAATCATTCTTA
CCAGTAAAGCTTTTTCTCATTTACctcatttttgtttcattttcactaat
tttAAAGATTATGTTTTATCAACAAATTGTTTTTTAAGGTGATGTATTCA
GACAATCCAATGGTTATTTGTGCACCTACTGGTTCAGGCAAAACTGCCAT
ATTTGAGATGAGCATTATACGATTGCTTTTCAGTACTACAAATTTCACCT
ACAAAATAGTATACTTGGCACCAATTAAAGCATTATGTAGTGAACGATAT
CAAGATTGGACTTCCAAGTTCGGACCATTTGGTTTGAAATGTACAGAGCT
TACTGGTGATACTGATATTGATGATTTCCAAGAACTCCACAAAGCACACA
TTGTTTTCACTACCCCTgaaaaatggGACAGTATGACGCGACGTTGGAGA
GATCAGAAGTCATTGGTGCAAACTGTTCGCTTGTTCCTTATTGATGAGGT
CCATTTACTCGGGGATGATGTCCGTGGTGCGACCATGGAAGCCGTTGTCA
GTCGTATGAAGACTATCCAAGTTGCCATCAATAGTGAGAAAGAAGACTCA
AACTCACCAGCTATGAGATTCTTAGCTATCTCCGCTACCATTCCTAATGT
CAATGATGTAAGTAGAGAATTTAAGATTAAAGTCTCTTTTACTAATCCTT
ACTTAACTTAGTTAGATCGATCTCCAAGTAAAACNCTTAAAATCTATTTT
ACTAATCCTTACTTAACTTAGTTAGATCGATCTCCAAGTAAAACTACTAA
CTAACTACTCTAAGGTTTCAAACTCTTTTTGAGATAACAATTCTCCAACT
TTTTTTTCCGTCTTTACGTTTTATAAAAGCTTTCACTTTACATACGAATG
TAGCTTCTTTGAATTCTATGTCGATTGCAAAAAACCttcaatgttttcaa
tcaatgACATGCACCACTATACCTTATcgaccctttttacgccggcccta
atttagcgccgtgtgccaaatttcagccaaatcaaagcatttttgaagtc
tccaggctgccctaaagtttttgtgacagacagacagacagacaga
Run BLAST on NCBI

transcript from alignment at scaffold_371:101973..105419-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062719 ID=TCONS_00062719|Name=TCONS_00062719|organism=Clytia hemisphaerica|type=transcript|length=3447bp|location=Sequence derived from alignment at scaffold_371:101973..105419- (Clytia hemisphaerica)
AGACAAAGACAGGGAAACATACTATATAGCGACAATAAAAGAGATTTTTG
ATAGGTTTTCTCCACAAAAAGGCTGTTTTTACCACAATTTTAGTTATTTC
AAGAGCGTAAAAAAAAGCATGAAAATTTTTCTAAAATTGGATTTAATTTA
AGTCCAAATTTTCGGAAATCATGACCTGGTAATTTGGTTTGTTGTAACCC
TAAAGATTTCTGAAATATCTTGTCCTTTAAGTTATCCCTAGGAGTAAAAG
GATTTATAATGTGTTCCTATATGGTATGGCGATGTAGGATCCGGCTTAAT
GGTTCAAATCCTGTATACTCAGATAAATCTACTATTTTATTACATTGTTA
AACCATATCTCAAAAGCTTCAGCAGTTTTCATTTTTTCCTTAATTTCTTT
ATGTTTAAAGCTGAAAAATACAGGTCAATTTTTCCATTTGCATACTTCAA
TGCATTGCAGTCTAAAGTTTTTGATGAGGTAATCATAGATTTATTTTGAA
GTGCATGGAGATTTCTCAATGTGTTCTCAAACGTCAGAAGTACTTTCAGA
ACTTTATGTTGCATTACTCTATTAGAAGGAGTAGAGGCTGCTCTATATGG
CTGACTTGGACGTAATTTAAAATAACAGACTAATTTGAAAATCATTCTTA
CCAGTAAAGCTTTTTCTCATTTACCTCATTTTTGTTTCATTTTCACTAAT
TTTAAAGATTATGTTTTATCAACAAATTGTTTTTTAAGGTGATGTATTCA
GACAATCCAATGGTTATTTGTGCACCTACTGGTTCAGGCAAAACTGCCAT
ATTTGAGATGAGCATTATACGATTGCTTTTCAGTACTACAAATTTCACCT
ACAAAATAGTATACTGTAAGCTGTTCTTTCTTGCATTGGCAAAAGCCTTC
TTGGCAATATTAAGTTTTCTTTGTTCTGAGTCGTCGAATTCACTTTCTTT
ATAAGAACAGAATATTAGAAAGTAAGACTTCGATGGCCGAAACATTAGCA
TAATATTTACAAAGAATTCACGTCTTTGGCCAAAATATTAAGAACAAGCT
AAGAACATTTTTAAGGCTTTGGAAATGACATAAATACTCATTGAATGGCA
AACATTTAAGAACACTTTTAGGCTTAAAAAATAGATGTTCTTATAAAAAG
AAACGGTATACTACCAATATTTTTCAGTGGCACCAATTAAAGCATTATGT
AGTGAACGATATCAAGATTGGACTTCCAAGTTCGGACCATTTGGTTTGAA
ATGTACAGAGCTTACTGGTGATACTGATATTGATGATTTCCAAGAACTCC
ACAAAGCACACATTGTTTTCACTACCCCTGTAAGAGTTGTTTTCTCTCAC
CTTTTTCCTTAATGTTCTTGATAAATTCAACGAAATCCAAGATAAGAACA
AAAAGTTAATTTGTTCTTATTTTTCTTTAACTTATTTTATTTAACGTTTC
GGTTTCAACCGAACAACATCATCAGTTAAAAATTTGTTGGGATGGAATGT
TGAGATCGAAACGTTTTATCAAATAAATTCAAAAAAATAAATAAAAAACA
ACTTCTGATACTTAAAATGCATGGAAGGATTGACCTATTTAACCTTTTTC
GTTATTTTCCTTGATAAAATTCACCAAAATCTGCTTTTAAGAACAAAAAT
TGTTAAATTGGGTTGTGTCCCGCTCTTAAGTGAGCCTTTTTGGAACTTCA
AAGCCCCGCTGTAACTTACCCTTACCCTTACTAAGGGTCCTAAAAATTGT
CCCTAAAATGGCAAAATTTCGGAAAAGAAATCACGGTAAGGGTCCCGAAA
TTCCCAAAATTTCGGTTTTCCCTTAATTTTTAACCAAAGAATTTCCGATA
TTGGATGCCTCCCTCAACATCCTCTCTCATCCAGCAAGGATAGTACCTCC
CAAGCCTGGGCATCGGTCTAAAGCCGGATATGTTGATGTCTAGAATAGGA
AATATTCTTTTCAGGCAAAATATCATCTTCGCTTATTTTACTTCCTTTTA
CATTTCAAAATGTGAAGTGCCTCTTTACTTCTTTAATGTCTTTTTCCCAA
TGTAAGCAAATAATTTTTTTTTAGGAAAAATGGGACAGTATGACGCGACG
TTGGAGAGATCAGAAGTCATTGGTGCAAACTGTTCGCTTGTTCCTTATTG
ATGAGGTATGGATTTCGTGTTTTTAGTCCATCGCGTGCTAGACGAAATGA
GTAGTAAAAGTAGTAAGAACATAAGCAAAAAATAATAGACGGGATAAATT
GTAGTTATAATATAAACTATTTTGTATTTATTTGGGTTATTCCTTGAAAA
GATGCAATTCCTATGTTAAGAAAGTCTTTTTTGAAAATTCGACGTTCTTC
TATCCGATACGCTCCCTTATTTGATGAAAATCTGATTCCCCTTGAAAATT
GAATTAAAGAGCGTAAAATTTAATATCATAAGTTTTGCATAGTGTGCAGA
GGGGTCACACCTTCACCCACCTTCACAAAGCAAAATATCGAAGAAATTTT
GCATGGAAATTCTTGATAAATTTATTTTAATTTTTTTTTCAGGAGGAATA
AAACCTTCCCCACAGCATAGATTTTTAACATAATTTAAAATATCTTCAAC
CTATCAGCTCTGCCCCCAGTTCTATTACACAACACTCAGCCCCCCCTAGC
AAGCTAGCCCCCAGTATTTTTTGAAAAATGCAGCCCCCAATCAAGCAAAA
ATGGTTCAGCCTCCCCCTAAGCTCAGGGGGGGGGTGCATTCCATGTTTTG
CCACCGAAGCTGCGCTTAAAAAAGTCTTATTAATTTGCTTCTTACTAGAA
GCGTCTAATCCGAATTCTATTTTTGCAGAAATCTCACTTTTTTCTTTAGG
TCCATTTACTCGGGGATGATGTCCGTGGTGCGACCATGGAAGCCGTTGTC
AGTCGTATGAAGACTATCCAAGTTGCCATCAATAGTGAGAAAGAAGACTC
AAACTCACCAGCTATGAGATTCTTAGCTATCTCCGCTACCATTCCTAATG
TCAATGATGTAAGTAGAGAATTTAAGATTAAAGTCTCTTTTACTAATCCT
TACTTAACTTAGTTAGATCGATCTCCAAGTAAAACNCTTAAAATCTATTT
TACTAATCCTTACTTAACTTAGTTAGATCGATCTCCAAGTAAAACTACTA
ACTAACTACTCTAAGGTTTCAAACTCTTTTTGAGATAACAATTCTCCAAC
TTTTTTTTCCGTCTTTACGTTTTATAAAAGCTTTCACTTTACATACGAAT
GTAGCTTCTTTGAATTCTATGTCGATTGCAAAAAACCTTCAATGTTTTCA
ATCAATGACATGCACCACTATACCTTATCGACCCTTTTTACGCCGGCCCT
AATTTAGCGCCGTGTGCCAAATTTCAGCCAAATCAAAGCATTTTTGAAGT
CTCCAGGCTGCCCTAAAGTTTTTGTGACAGACAGACAGACAGACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039295XLOC_039295Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062719-exon-scaffold_371-1575043694:104555..105419TCONS_00062719-exon-scaffold_371-1575043694:104555..105419Clytia hemisphaericaexon
TCONS_00062719-exon-scaffold_371-1575043694:104091..104242TCONS_00062719-exon-scaffold_371-1575043694:104091..104242Clytia hemisphaericaexon
TCONS_00062719-exon-scaffold_371-1575043694:103265..103345TCONS_00062719-exon-scaffold_371-1575043694:103265..103345Clytia hemisphaericaexon
TCONS_00062719-exon-scaffold_371-1575043694:101973..102570TCONS_00062719-exon-scaffold_371-1575043694:101973..102570Clytia hemisphaericaexon
TCONS_00062719-exon-scaffold_371-1510915933:104555..105419TCONS_00062719-exon-scaffold_371-1510915933:104555..105419Clytia hemisphaericaexon
TCONS_00062719-exon-scaffold_371-1510915933:104091..104242TCONS_00062719-exon-scaffold_371-1510915933:104091..104242Clytia hemisphaericaexon
TCONS_00062719-exon-scaffold_371-1510915933:103265..103345TCONS_00062719-exon-scaffold_371-1510915933:103265..103345Clytia hemisphaericaexon
TCONS_00062719-exon-scaffold_371-1510915933:101973..102570TCONS_00062719-exon-scaffold_371-1510915933:101973..102570Clytia hemisphaericaexon
TCONS_00062719-exon-scaffold_371-1491911889:104555..105419TCONS_00062719-exon-scaffold_371-1491911889:104555..105419Clytia hemisphaericaexon
TCONS_00062719-exon-scaffold_371-1491911889:104091..104242TCONS_00062719-exon-scaffold_371-1491911889:104091..104242Clytia hemisphaericaexon
TCONS_00062719-exon-scaffold_371-1491911889:103265..103345TCONS_00062719-exon-scaffold_371-1491911889:103265..103345Clytia hemisphaericaexon
TCONS_00062719-exon-scaffold_371-1491911889:101973..102570TCONS_00062719-exon-scaffold_371-1491911889:101973..102570Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_371supercontigscaffold_371:101973..105419 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0992863	0.218882	0.67004	1.2534	0.0483429	0.215583	0.660333	0.886168	0.706195	0.812496	1.22325	0.901607	0.0443658	0.0675924	0.0698823	0.0468113	0.025505	0.0313491	0.0512008	0.0534362	0.180788	0.250432	0.102335	0.281608	0.0377305	0	0.168422	0.140681	0.156231	0.214745
Blast
[Close]
BLAST of TCONS_00062719 vs. Swiss-Prot (Human)
Match: HFM1 (Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1 PE=1 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 1.541e-63
Identity = 109/184 (59.24%), Postives = 134/184 (72.83%), Query Frame = 1 
Query:  721 NKLFFKVMYSDNPMVICAPTGSGKTAIFEMSIIRLLFSTTN--FTYKIVYLAPIKALCSERYQDWTSKFGPFGLKCTELTGDTDIDDFQELHKAHIVFTTPEKWDSMTRRWRDQKSLVQTVRLFLIDEVHLLGDDVRGATMEAVVSRMKTIQVAINSEKEDSNSPAMRFLAISATIPNVNDVSR 1266
            +K F  ++Y+D   VICAPTGSGKT +FE++I RLL          KIVY+APIKALCS+R+ DW  KFGP GL C ELTGDT +DD  E+  AHI+ TTPEKWDSMTR+WRD  SLVQ VRLFLIDEVH++ D+ RG T+E VVSRMKT+Q    + K  S +  MRF+A+SATIPN  D++ 
Sbjct:  286 SKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWLNIKIVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDN-SLVQLVRLFLIDEVHIVKDENRGPTLEVVVSRMKTVQSVSQTLKNTSTAIPMRFVAVSATIPNAEDIAE 468
The following BLAST results are available for this feature:
BLAST of TCONS_00062719 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HFM11.541e-6359.24Probable ATP-dependent DNA helicase HFM1 OS=Homo s... [more]
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