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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062688 ID=TCONS_00062688|Name=TCONS_00062688|organism=Clytia hemisphaerica|type=transcript|length=3202bpRun BLAST on NCBI protein sequence of TCONS_00062688-protein >TCONS_00062688-protein ID=TCONS_00062688-protein|Name=TCONS_00062688-protein|organism=Clytia hemisphaerica|type=polypeptide|length=416bp MKLIFLAVSLIVVTLDALPKHGVFRPPTEIEVNEKFYHRHGDIERIQHNDRun BLAST on NCBI transcript from alignment at scaffold_371:428871..442512+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062688 ID=TCONS_00062688|Name=TCONS_00062688|organism=Clytia hemisphaerica|type=transcript|length=13642bp|location=Sequence derived from alignment at scaffold_371:428871..442512+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_371:428871..442512+ >TCONS_00062688 ID=TCONS_00062688|Name=TCONS_00062688|organism=Clytia hemisphaerica|type=CDS|length=16263bp|location=Sequence derived from alignment at scaffold_371:428871..442512+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062688 vs. Swiss-Prot (Human)
Match: ASTL (Astacin-like metalloendopeptidase OS=Homo sapiens GN=ASTL PE=1 SV=4) HSP 1 Score: 110.153 bits (274), Expect = 3.282e-25 Identity = 73/229 (31.88%), Postives = 114/229 (49.78%), Query Frame = 1
Query: 472 KNDIIESENRKRNSVKINLWNPTQPGEKLVIPYSFRSDY--PNRLRPYVEKAIKSMNQHLRCGYDVWVPYSNQAHRVEFIKDGGCYSLLGKDTSEGNKQPISIDDGC--EAKHIVLHEMMHAMGFYHEQNRFDRDQFIKINWNNIQDGMASQFDKASNNNIFQTSVPYDYMSVMHYSLSSFSKNGQNTMTILKNAQSAKLTAQDLRILGDVPDLSAEDLQEVRAYFNCN 1146
+ DII + S N W P + +P+ S Y P+R + ++++ + R +V Y +Q + I GC+S +G+ G Q +S+ C + + IVLHE+MH +GF+HE R DRD++I++NWN I G F K+ ++N+ PYDY SVMHY +FS+ G T+T L A + I G +LSA D+ V + C+
Sbjct: 75 EGDIIRPSPFRLLSATSNKW-PMGGSGVVEVPFLLSSKYDEPSR-----QVILEALAEFERSTCIRFVTYQDQRDFISIIPMYGCFSSVGRS---GGMQVVSLAPTCLQKGRGIVLHELMHVLGFWHEHTRADRDRYIRVNWNEILPGFEINFIKSQSSNML---TPYDYSSVMHYGRLAFSRRGLPTIT--------PLWAPSVHI-GQRWNLSASDITRVLKLYGCS 282 The following BLAST results are available for this feature:
BLAST of TCONS_00062688 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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