|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062672 ID=TCONS_00062672|Name=TCONS_00062672|organism=Clytia hemisphaerica|type=transcript|length=2363bpRun BLAST on NCBI protein sequence of TCONS_00062672-protein >TCONS_00062672-protein ID=TCONS_00062672-protein|Name=TCONS_00062672-protein|organism=Clytia hemisphaerica|type=polypeptide|length=406bp MYRANNPNAPSYRSNMNGDSFTHVSYRRNPGYFERVGSSMCGTIFGFILLRun BLAST on NCBI transcript from alignment at scaffold_371:110419..138120+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062672 ID=TCONS_00062672|Name=TCONS_00062672|organism=Clytia hemisphaerica|type=transcript|length=27702bp|location=Sequence derived from alignment at scaffold_371:110419..138120+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_371:110419..138120+ >TCONS_00062672 ID=TCONS_00062672|Name=TCONS_00062672|organism=Clytia hemisphaerica|type=CDS|length=14652bp|location=Sequence derived from alignment at scaffold_371:110419..138120+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00062672 vs. Swiss-Prot (Human)
Match: TMM43 (Transmembrane protein 43 OS=Homo sapiens GN=TMEM43 PE=1 SV=1) HSP 1 Score: 302.753 bits (774), Expect = 5.593e-94 Identity = 147/397 (37.03%), Postives = 235/397 (59.19%), Query Frame = 2
Query: 167 APSYRSNMNGDSFTHVSYRRNPGYFERVGSSMCGTIFGFILLVVAFPVLFYNEGRAVQTAKSLDEGLKQVNTLSPSNQIFGSNEGKLVHLTDRLKSSKALVDNDFGINIYYIALKRRVEMYQWVEHENKREYNEGDRTRVETSYSYTKEWKEEMMKSSGFSQSTLYRNPGSKPLESQTIRSSLVHVAEFQLSQNLINKVSSFHPYKLTNVPHPFKTV---GEFVYKSQDPYNPEVGDLRISFEVAGQS-HPSDQSQQDIVSIVAKQRGSSLTSYQTKAGDSLEMLYDGEKSAQEIFEAEHSFNTKLTWGIRFVGWLLMFISFQIITDVLRQIVSFIPIIREIVTLATTIIAFSMASSLTLVTVAIAWFYYRPLLSVTLICMAAIPLFLSRQKAASEK 1345
A +Y S V PG+ ER+ + G G + +++F ++F NEGRA++TA SL EGL V + + + NEG+LVH+ L++SK L D ++G+++ + L+R VEMYQWVE E REY E + + ET YSY EW+ E++ S F + ++NP + +ES + V + F LS LI+KV +F L+ + P + G+F Y S++P PEVGDLR+SF AG S D +V+++A+QRG L + TK+GD+L +L+ G+ SA+E+F E N+ TWG+R GW+ MF+ ++T +L +V + P+ R++V + AF +A+SLTL+TVA W +YRPL ++ + +A +P+ ++R + ++K
Sbjct: 2 AANYSSTSTRREHVKVKTSSQPGFLERLSETSGGMFVGLMAFLLSFYLIFTNEGRALKTATSLAEGLSLVVSPDSIHSVAPENEGRLVHIIGALRTSKLLSDPNYGVHLPAVKLRRHVEMYQWVETEESREYTEDGQVKKETRYSYNTEWRSEIINSKNFDREIGHKNPSAMAVESFMATAPFVQIGRFFLSSGLIDKVDNFKSLSLSKLEDPHVDIIRRGDFFYHSENPKYPEVGDLRVSFSYAGLSGDDPDLGPAHVVTVIARQRGDQLVPFSTKSGDTLLLLHHGDFSAEEVFHRELRSNSMKTWGLRAAGWMAMFMGLNLMTRILYTLVDWFPVFRDLVNIGLKAFAFCVATSLTLLTVAAGWLFYRPLWALLIAGLALVPILVARTRVPAKK 398 The following BLAST results are available for this feature:
BLAST of TCONS_00062672 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.