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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062670 ID=TCONS_00062670|Name=TCONS_00062670|organism=Clytia hemisphaerica|type=transcript|length=1545bp
CGTGAATTCTTTGTAAATATTATGCTAATGTTTCGGCCATCGAAGTCTTA
CTTTCTAatattctgttcttataaagaaagtgAATTCGACGACTCAGAAC
AAAGAAAACTTAATATTGCCAAGAAGGCTTTTGCCAATGCAAGAAAGAAC
AGCTTACAGTATACTATTTTGTAGGTGAAATTTGTAGTACTGAAAAGCAA
TCGTATAATGCTCATCTCAAATATGGCAGTTTTGCCTGAACCAGTAGGTG
CACAAATAACCATTGGATTGTCTGAATACATCACCTTAAAAAACAATTTG
TTGATAAAACATAATCTTTaaaattagtgaaaatgaaacaaaaatgagGT
AAATGAGAAAAAGCTTTACTGGTAAGAATGATTTTCAAATTAGTCTGTTA
TTTTAAATTACGTCCAAGTCAGCCATATAGAGCAGCCTCTACTCCTTCTA
ATAGAGTAATGCAACATAAAGTTCTGAAAGTACTTCTGACGTTTGAGAAC
ACATTGAGAAATCTCCATGCACTTCAAAATAAATCTATGATTACCTCATC
AAAAACTTTAGACTGCAATGCATTGAAGTATGCAAATGGAAAAATTGACC
TGTATTTTTCAGCTTTAAACATAAAGAAATtaaggaaaaaatgaaaactg
ctGAAGCTTTTGAGATATGGTTTAACAATGTAATAAAATAGTAGATTTAT
CTGAGTATACAGGATTTGAACCATTAAGCCGGATCCTACATCGCCATACC
ATATAGGAACACATTATAAATCCTTTTACTCCTAGGGATAACTTAAAGGA
CAAGATATTTCAGAAATCTTTAGGGTTACAACAAACCAAATTACCAGGTC
ATGATTTCCGAAAATTTGGACTTAAATTAAAtccaattttagaaaaattt
tcatgcTTTTTTTTACGCTCTTGAAATAACTAAAATtgtggtaaaaacag
cctttttgtGGAGAAAACCTatcaaaaatctcttttattgtcgCTATATA
GTATGTTTCCCTGTCTTTGTCTCTCTAGAATATGAACTGAATTAAGACTA
AGATATTAGCAAATCCTCTCTAAAAAACGTAGAATTATTAGTTtttgcat
tttgaatttttctttttactatTGTCAACACCTTGCACATTCAAAATCAA
ACAAGGGGACTTCTTAAGAAATATAAAATTCAATTGAAGGTTGAAAAGAT
ACGGATTTCATGTATTGATTTCAGATTATGAGatccatcatcatcattgc
cgactaaaaaaagaatgtttcacttattttcttcaaaatttaaaaacatt
actattcatgatatgcaccactggagagtcttctgagaacttttaaagtt
ttccacccagtacgtcacttaaacaatagaaaaagtgacatattgggtgg
aacaaaaacagaaaaattgcataattttgtgaagtcattgcagtggtgca
tatcatgaacaCACTGTTTCACGCCATCTCATTTTAATCAATAATTTCCT
ATGAGACGATTGATTGTGCAAGACCTAATTGTTTCAGTTCCCACA Run BLAST on NCBI transcript from alignment at scaffold_371:104398..106000+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062670 ID=TCONS_00062670|Name=TCONS_00062670|organism=Clytia hemisphaerica|type=transcript|length=1603bp|location=Sequence derived from alignment at scaffold_371:104398..106000+ (Clytia hemisphaerica)
CGTGAATTCTTTGTAAATATTATGCTAATGTTTCGGCCATCGAAGTCTTA
CTTTCTAatattctgttcttataaagaaagtgAATTCGACGACTCAGAAC
AAAGAAAACTTAATATTGCCAAGAAGGCTTTTGCCAATGCAAGAAAGAAC
AGCTTACAGTATACTATTTTGTAGGTGAAATTTGTAGTACTGAAAAGCAA
TCGTATAATGCTCATCTCAAATATGGCAGTTTTGCCTGAACCAGTAGGTG
CACAAATAACCATTGGATTGTCTGAATACATCACCTTAAAAAACAATTTG
TTGATAAAACATAATCTTTaaaattagtgaaaatgaaacaaaaatgagGT
AAATGAGAAAAAGCTTTACTGGTAAGAATGATTTTCAAATTAGTCTGTTA
TTTTAAATTACGTCCAAGTCAGCCATATAGAGCAGCCTCTACTCCTTCTA
ATAGAGTAATGCAACATAAAGTTCTGAAAGTACTTCTGACGTTTGAGAAC
ACATTGAGAAATCTCCATGCACTTCAAAATAAATCTATGATTACCTCATC
AAAAACTTTAGACTGCAATGCATTGAAGTATGCAAATGGAAAAATTGACC
TGTATTTTTCAGCTTTAAACATAAAGAAATtaaggaaaaaatgaaaactg
ctGAAGCTTTTGAGATATGGTTTAACAATGTAATAAAATAGTAGATTTAT
CTGAGTATACAGGATTTGAACCATTAAGCCGGATCCTACATCGCCATACC
ATATAGGAACACATTATAAATCCTTTTACTCCTAGGGATAACTTAAAGGA
CAAGATATTTCAGAAATCTTTAGGGTTACAACAAACCAAATTACCAGGTC
ATGATTTCCGAAAATTTGGACTTAAATTAAAtccaattttagaaaaattt
tcatgcTTTTTTTTACGCTCTTGAAATAACTAAAATtgtggtaaaaacag
cctttttgtGGAGAAAACCTatcaaaaatctcttttattgtcgCTATATA
GTATGTTTCCCTGTCTTTGTCTCTCTAGAATATGAACTGAATTAAGACTA
AGATATTAGCAAATCCTCTCTAAAAAACGTAGGNCCAAATTACCAGggag
tctgttaaatgacgcgccttacgcgctcTAAAAAAGGTAGAATTATTAGT
TtttgcattttgaatttttctttttactatTGTCAACACCTTGCACATTC
AAAATCAAACAAGGGGACTTCTTAAGAAATATAAAATTCAATTGAAGGTT
GAAAAGATACGGATTTCATGTATTGATTTCAGATTATGAGatccatcatc
atcattgccgactaaaaaaagaatgtttcacttattttcttcaaaattta
aaaacattactattcatgatatgcaccactggagagtcttctgagaactt
ttaaagttttccacccagtacgtcacttaaacaatagaaaaagtgacata
ttgggtggaacaaaaacagaaaaattgcataattttgtgaagtcattgca
gtggtgcatatcatgaacaCACTGTTTCACGCCATCTCATTTTAATCAAT
AATTTCCTATGAGACGATTGATTGTGCAAGACCTAATTGTTTCAGTTCCC
ACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062670-exon-scaffold_371-1491911889:104398..105475 | TCONS_00062670-exon-scaffold_371-1491911889:104398..105475 | Clytia hemisphaerica | exon |
| TCONS_00062670-exon-scaffold_371-1510915933:104398..105475 | TCONS_00062670-exon-scaffold_371-1510915933:104398..105475 | Clytia hemisphaerica | exon |
| TCONS_00062670-exon-scaffold_371-1575043694:104398..105475 | TCONS_00062670-exon-scaffold_371-1575043694:104398..105475 | Clytia hemisphaerica | exon |
| TCONS_00062670-exon-scaffold_371-1491911889:105534..106000 | TCONS_00062670-exon-scaffold_371-1491911889:105534..106000 | Clytia hemisphaerica | exon |
| TCONS_00062670-exon-scaffold_371-1510915933:105534..106000 | TCONS_00062670-exon-scaffold_371-1510915933:105534..106000 | Clytia hemisphaerica | exon |
| TCONS_00062670-exon-scaffold_371-1575043694:105534..106000 | TCONS_00062670-exon-scaffold_371-1575043694:105534..106000 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_371 | supercontig | scaffold_371:104398..106000 + |
Blast
The following BLAST results are available for this feature:
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