TCONS_00062664 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062664
Unique NameTCONS_00062664
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length801

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062664 ID=TCONS_00062664|Name=TCONS_00062664|organism=Clytia hemisphaerica|type=transcript|length=801bp
AAGCAAACATTGGACTGGTAAAAAATCTCGCATGGATTGTGAATTGAAGG
TTAATGGGAGGGTTTCGCTAATATTTGAAATTCTTGCTGATCAAAATCTT
GCTAAATCATCTAAGTTCCATAAAAATATTGCATAAACAAAGAGCCAGAT
AGATCCCTTTTTAAAGCCATTCGTTTCAAAATATGGTAGTGATAAACTTA
TCAAATATTGGGTGGAATATATTTACGATATAAAATAAGGTTTAGAAAAG
TGATTTCGATGATAACGTAAGCTTACATCTTTGATGCTTGGATCTTCGAC
CTTCAAACGTTGACGGCCATGTTGATATAAATTTTGGCGGGTTCCTGGTT
AGCACGAACAATCCTGTACTTATTGAAAGGTTATTTCCTTACGccttttg
tttataaaaatccATATGTACACAATGGTTGCggatcatgaaaaaaaaaa
ttccgtgTGAATACgcacagtcagggaaatccctcaattgcggtatactg
caattgcggtagttttcattcgtgtttagcctacaaaggcttataacgac
tacatatagtgctggtcgacaaagataaacaaacatcgactataaaaaat
cgtacgagaagaaagctttttatggcgcgccaaagcggaaataaatacta
tctttttaaaacaatactatcttcgtttaaaacatactatctttttttaa
aacatagtatcttcgtttaaaacatactatcttttttaaaacatactatt
ttttgcttaaaaaatactattttcgtttaaaacatagtatctttaaaaaa
t
Run BLAST on NCBI

transcript from alignment at scaffold_370:375393..376193

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062664 ID=TCONS_00062664|Name=TCONS_00062664|organism=Clytia hemisphaerica|type=transcript|length=801bp|location=Sequence derived from alignment at scaffold_370:375393..376193 (Clytia hemisphaerica)
attttttaaagatactatgttttaaacgaaaatagtattttttaagcaaa
aaatagtatgttttaaaaaagatagtatgttttaaacgaagatactatgt
tttaaaaaaagatagtatgttttaaacgaagatagtattgttttaaaaag
atagtatttatttccgctttggcgcgccataaaaagctttcttctcgtac
gattttttatagtcgatgtttgtttatctttgtcgaccagcactatatgt
agtcgttataagcctttgtaggctaaacacgaatgaaaactaccgcaatt
gcagtataccgcaattgagggatttccctgactgtgcGTATTCAcacgga
attttttttttcatgatccGCAACCATTGTGTACATATggatttttataa
acaaaaggCGTAAGGAAATAACCTTTCAATAAGTACAGGATTGTTCGTGC
TAACCAGGAACCCGCCAAAATTTATATCAACATGGCCGTCAACGTTTGAA
GGTCGAAGATCCAAGCATCAAAGATGTAAGCTTACGTTATCATCGAAATC
ACTTTTCTAAACCTTATTTTATATCGTAAATATATTCCACCCAATATTTG
ATAAGTTTATCACTACCATATTTTGAAACGAATGGCTTTAAAAAGGGATC
TATCTGGCTCTTTGTTTATGCAATATTTTTATGGAACTTAGATGATTTAG
CAAGATTTTGATCAGCAAGAATTTCAAATATTAGCGAAACCCTCCCATTA
ACCTTCAATTCACAATCCATGCGAGATTTTTTACCAGTCCAATGTTTGCT
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039276XLOC_039276Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062664-exon-scaffold_370-1491911889:375393..376193TCONS_00062664-exon-scaffold_370-1491911889:375393..376193Clytia hemisphaericaexon
TCONS_00062664-exon-scaffold_370-1510915933:375393..376193TCONS_00062664-exon-scaffold_370-1510915933:375393..376193Clytia hemisphaericaexon
TCONS_00062664-exon-scaffold_370-1575043694:375393..376193TCONS_00062664-exon-scaffold_370-1575043694:375393..376193Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_370supercontigscaffold_370:375393..376193 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.1645	5.593	10.7608	11.9142	9.31703	6.15222	6.8517	6.37634	6.00676	7.50913	9.01989	5.85455	5.37382	5.90265	7.39022	9.04295	9.16987	9.07801	6.08262	6.66849	11.0597	11.0968	7.86564	7.62306	1.94066	3.49376	8.25194	6.51638	8.52321	8.28856
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062664 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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