TCONS_00062663 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062663
Unique NameTCONS_00062663
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062663 ID=TCONS_00062663|Name=TCONS_00062663|organism=Clytia hemisphaerica|type=transcript|length=323bp
ACGTGCAGATGAACTACAGTCTGTCATCAACAGAGGAAACTTCACTCtca
aaggcttcactttttctggAATGAAACCAACCGAAGACTTATCAGAAGAC
GGTTCAAGCATCTCTGTAGGAGGAATGAGATGGTTCCCTGAAACCGATGA
ACTCACACTCAGTATCTCAGACCTCAATTTCTCCAAGAAGAGGAGGggaa
agaaatcttcaaaagcaTCTAACATCATCCCGGACAAGCTAACACGTAGA
GATTGTGCATCCAAAGTTGCAGAAATTTTCGATCTGACAGGGAAAATGTC
ACCAATCGTTGCTTCAATGAAAC
Run BLAST on NCBI

protein sequence of TCONS_00062663-protein

>TCONS_00062663-protein ID=TCONS_00062663-protein|Name=TCONS_00062663-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
RADELQSVINRGNFTLKGFTFSGMKPTEDLSEDGSSISVGGMRWFPETDE
LTLSISDLNFSKKRRGKKSSKASNIIPDKLTRRDCASKVAEIFDLTGKMS
PIVASMK
Run BLAST on NCBI

transcript from alignment at scaffold_370:365190..365512

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062663 ID=TCONS_00062663|Name=TCONS_00062663|organism=Clytia hemisphaerica|type=transcript|length=323bp|location=Sequence derived from alignment at scaffold_370:365190..365512 (Clytia hemisphaerica)
GTTTCATTGAAGCAACGATTGGTGACATTTTCCCTGTCAGATCGAAAATT
TCTGCAACTTTGGATGCACAATCTCTACGTGTTAGCTTGTCCGGGATGAT
GTTAGAtgcttttgaagatttctttccCCTCCTCTTCTTGGAGAAATTGA
GGTCTGAGATACTGAGTGTGAGTTCATCGGTTTCAGGGAACCATCTCATT
CCTCCTACAGAGATGCTTGAACCGTCTTCTGATAAGTCTTCGGTTGGTTT
CATTccagaaaaagtgaagcctttgaGAGTGAAGTTTCCTCTGTTGATGA
CAGACTGTAGTTCATCTGCACGT

Coding sequence (CDS) from alignment at scaffold_370:365190..365512

>TCONS_00062663 ID=TCONS_00062663|Name=TCONS_00062663|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_370:365190..365512 (Clytia hemisphaerica)
TTTCATTGAAGCAACGATTGGTGACATTTTCCCTGTCAGATCGAAAATTT
CTGCAACTTTGGATGCACAATCTCTACGTGTTAGCTTGTCCGGGATGATG
TTAGAtgcttttgaagatttctttccCCTCCTCTTCTTGGAGAAATTGAG
GTCTGAGATACTGAGTGTGAGTTCATCGGTTTCAGGGAACCATCTCATTC
CTCCTACAGAGATGCTTGAACCGTCTTCTGATAAGTCTTCGGTTGGTTTC
ATTccagaaaaagtgaagcctttgaGAGTGAAGTTTCCTCTGTTGATGAC
AGACTGTAGTTCATCTGCACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039275XLOC_039275Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062663-proteinTCONS_00062663-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062663-exon-scaffold_370-1491911889:365190..365512TCONS_00062663-exon-scaffold_370-1491911889:365190..365512Clytia hemisphaericaexon
TCONS_00062663-exon-scaffold_370-1510915933:365190..365512TCONS_00062663-exon-scaffold_370-1510915933:365190..365512Clytia hemisphaericaexon
TCONS_00062663-exon-scaffold_370-1575043694:365190..365512TCONS_00062663-exon-scaffold_370-1575043694:365190..365512Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_370supercontigscaffold_370:365190..365512 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.721952	0.605787	1.88699	0.641547	0.955733	1.21076	0	1.38984	0.524456	0.974434	0.31527	0.739839	1.16502	1.38006	0.355953	0	0.700811	0.532572	0.608563	0	0.300869	0	0	0.922837	3.33166	4.66605	0	0	1.1763	2.30269
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062663 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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