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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062645 ID=TCONS_00062645|Name=TCONS_00062645|organism=Clytia hemisphaerica|type=transcript|length=3617bpRun BLAST on NCBI protein sequence of TCONS_00062645-protein >TCONS_00062645-protein ID=TCONS_00062645-protein|Name=TCONS_00062645-protein|organism=Clytia hemisphaerica|type=polypeptide|length=882bp MSISSEDSFEMEMDPLFSDEDGDADNDEDDDEMDINPFWSSDEDEGQGGSRun BLAST on NCBI transcript from alignment at scaffold_370:336685..373273- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062645 ID=TCONS_00062645|Name=TCONS_00062645|organism=Clytia hemisphaerica|type=transcript|length=36589bp|location=Sequence derived from alignment at scaffold_370:336685..373273- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_370:336685..373273- >TCONS_00062645 ID=TCONS_00062645|Name=TCONS_00062645|organism=Clytia hemisphaerica|type=CDS|length=39735bp|location=Sequence derived from alignment at scaffold_370:336685..373273- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062645 vs. Swiss-Prot (Human)
Match: EF2K (Eukaryotic elongation factor 2 kinase OS=Homo sapiens GN=EEF2K PE=1 SV=2) HSP 1 Score: 344.739 bits (883), Expect = 1.009e-102 Identity = 160/280 (57.14%), Postives = 207/280 (73.93%), Query Frame = 1
Query: 877 TKKKTLSKTISCPNSQ--KSHWLEAVQKAKNIDDPWEKYDIIGRCPTERAKRFRYNALKKKWVQDEVLVKMENESFGKGAMRKCFRMKKLSTMVHTNDWNYASNIVAKRYFDDDVLPKTYFDDIKLQMDAKLWAEEYNRHKPPKKVDIIQVALLKMLDRENAPMFHIEHFVEGKYVKYNSNSGFVLRGEDESVRATPQAFSHFTFERSGHQMIVVDVQGVGDIYTDPQIHTAKADEYGDANLGTKGMALFFASHECTQICEDLNLTKFDLSGREIQRLNE 1710
TK + S + S NS K W A+QKAK++ DPW ++ + TERA R RYNA+ +W+ DEVL+KM ++ FG+GAMR+CFR KKLS +H W ASN VAKRY + V YF+D++LQM+AKLW EEYNRHKPPK+VDI+Q+ ++++ DR P+FH+EH++EGKY+KYNSNSGFV D+++R TPQAFSHFTFERSGHQ+IVVD+QGVGD+YTDPQIHT ++GD NLG +GMALFF SH C +ICE + L FDLS RE +N+
Sbjct: 64 TKSERYSSSGSPANSFHFKEAWKHAIQKAKHMPDPWAEFHL-EDIATERATRHRYNAVTGEWLDDEVLIKMASQPFGRGAMRECFRTKKLSNFLHAQQWKGASNYVAKRYIEP-VDRDVYFEDVRLQMEAKLWGEEYNRHKPPKQVDIMQMCIIELKDRPGKPLFHLEHYIEGKYIKYNSNSGFV---RDDNIRLTPQAFSHFTFERSGHQLIVVDIQGVGDLYTDPQIHTETGTDFGDGNLGVRGMALFFYSHACNRICESMGLAPFDLSPRERDAVNQ 338 HSP 2 Score: 126.716 bits (317), Expect = 1.563e-29 Identity = 88/219 (40.18%), Postives = 121/219 (55.25%), Query Frame = 1
Query: 2185 KRLDALANLEEQQTSILSQVHYDLATYNYIGRFTDNDPDYD--SVVYHLEKSAMSGSLQANKILAAKYSQIA---TXXXXXXXXXXNYDHSMDCYIEAATRGDRDSMIRTARAYDTGLNLGKARSVSYTEALKWYEAALNQNTGPTDCN-------FNTNPNYEINALMADIWRKGGHGIEKDPSYAGELYSLAAEQAMSSGKGKLSNKYYMIAEEAWG 2805
+RL+AL ++ SIL +VH + Y+ GRF + ++D S V+HLE +A G L+A L YSQ+ + E EEN D ++AA GDR SMI ARA+D+G NL R + EAL WY AL TDC+ P Y + A A++ GG+G+EKDP +G+LY+ AAE AM + KG+L+N+YY AEEAW
Sbjct: 507 QRLNALDLEKKIGKSILGKVHLAMVRYHEGGRFCEKGEEWDQESAVFHLEHAANLGELEAIVGLGLMYSQLPHHILADVSLKETEENKTKGFDYLLKAAEAGDRQSMILVARAFDSGQNLSPDRCQDWLEALHWYNTALEM----TDCDEGGEYDGMQDEPRYMMLAREAEMLFTGGYGLEKDPQRSGDLYTQAAEAAMEAMKGRLANQYYQKAEEAWA 721 The following BLAST results are available for this feature:
BLAST of TCONS_00062645 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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