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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062620 ID=TCONS_00062620|Name=TCONS_00062620|organism=Clytia hemisphaerica|type=transcript|length=1345bp CAGAAGATGAAAATCCTGTATTGCACTATTCTATTTTTGGTACTGGCTTC TATACATTCAGTTCAAGCAGGTATGTCTTGGAACCAGAATGGTAACCGAA AGTATGCAGTCAAATTCGTTGCTGCTGGTTTTATAGTTGGATACACAGCT ATATGGTCTCTATTCATCATCAAATCCGTCATTCTACCGCCGGAAACAAA GACTGAAGGAATGATTAAATTTAACTATGATCAAAAGCTCCAAATTCGTA ACTTACTATTTTCAGGTGATGAGAGTGAAGTTATCAGCTCAAAACTCATA AAGTCACAAACAACAATTGCACCATTAATATCAACAAATGATTCCACCAG TCACCATGGCAACACAACAGAAAATCCAGTTCTAAAAGAATTACATGGCA TTAAAAACACAATGTTAGAATTCGAAGGACGAATGAAAAAACTTGTTGAA TGGGAAAATTATCGCCATCAccatgaaaagttgaaaaaacttGTCTATAT ATCTGACGGTAAAGCTGATAAAAAGTACAGCATGTTTCGACCGAATGTTT TAgtggacaaaataaaatttgatagcAGCGCTCATTACAAAGTAATCATC TTGGTAACATCGTTTGCTAAACATTTCGAGCGCCGCCAGTGGATCCGCAA AGCGTGGGGCAACCAAACATTTTGGAATAAAAGTGTGGAAAATTGGCAAG TAATATTCAATGTAGGAGCTGTTGATTCTGCTGAAGTCCAGCAAAAGCTG GTTGAAGAATCTAAGAATCACGGTGATATGTTGATTTTAGATGTTCCAGA AAACTTTCATAAACTGTCAGAGAAAGTTATGGCAGCCTTATATTGGACAT ACACAAAATTTAGTTTTGAGTTTGTTTTCAAGACAGATGACGATGTTTTC ATACATATGCAACGTTTGTTGACAAAACTGAATACGACTTGGTCGCAAGA AAACTTTGTAGGACAAGGAATGATGAAGCAGCCTGTGGACAGGAGCAAAG GACGTTATGGCGTTTCCGGTAAAGAATGGCCAGGAAAATACTTTGACCCT TATTGCAGCGGTGGTGGCTACGTTTTATCGCACTATATAATCGAACGAAT AATACCTCATTTCAATTGGGAAAACCCTTTGAAAATAGATGACGCATATA TTGGTCATTTGGTCAAGTTAGCAGGTGGAAAAGTCTATCGTGATAAAAAG GGCTTTGTAATGTCTAACACATGGTTGGAATATACACCAGAGTTTGTTGT AACACACCCAATAAAGAAGCTTGAATTCCGCGAATTCGCCGAAAAGAAAG CTGCTATTGAAATTGGAAAGCTCAAATTACAAGAAGTGCAAAATT Run BLAST on NCBI protein sequence of TCONS_00062620-protein >TCONS_00062620-protein ID=TCONS_00062620-protein|Name=TCONS_00062620-protein|organism=Clytia hemisphaerica|type=polypeptide|length=448bp
QKMKILYCTILFLVLASIHSVQAGMSWNQNGNRKYAVKFVAAGFIVGYTA IWSLFIIKSVILPPETKTEGMIKFNYDQKLQIRNLLFSGDESEVISSKLI KSQTTIAPLISTNDSTSHHGNTTENPVLKELHGIKNTMLEFEGRMKKLVE WENYRHHHEKLKKLVYISDGKADKKYSMFRPNVLVDKIKFDSSAHYKVII LVTSFAKHFERRQWIRKAWGNQTFWNKSVENWQVIFNVGAVDSAEVQQKL VEESKNHGDMLILDVPENFHKLSEKVMAALYWTYTKFSFEFVFKTDDDVF IHMQRLLTKLNTTWSQENFVGQGMMKQPVDRSKGRYGVSGKEWPGKYFDP YCSGGGYVLSHYIIERIIPHFNWENPLKIDDAYIGHLVKLAGGKVYRDKK GFVMSNTWLEYTPEFVVTHPIKKLEFREFAEKKAAIEIGKLKLQEVQN Run BLAST on NCBI transcript from alignment at scaffold_370:103075..105277+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062620 ID=TCONS_00062620|Name=TCONS_00062620|organism=Clytia hemisphaerica|type=transcript|length=2203bp|location=Sequence derived from alignment at scaffold_370:103075..105277+ (Clytia hemisphaerica) CAGAAGATGAAAATCCTGTATTGCACTATTCTATTTTTGGTACTGGCTTC
TATACATTCAGTTCAAGCAGGTAAGGATTACTTAAGAATATTCTATCCAT
TGTACTAACGCAATTTGTAATAAACGCTACACTTTGTAATGCCTAACGCA
ATTTGTAATACACCTttacgcactttgtaataaaaactgacacactttgt
aataaaaaaaacgaCGTGCTGCTTTGTAATACAAAAAGCTGACGCGCTTT
GTAATAGCATCTGACGCACTTAGTACATCCATTACGATTATTGACCTCCC
TTATCCTACCTAAGGTTATAATAACGTCATGACAGACCAGGGTGTAAAAT
TGGACACCCTGTTCCAGCaggtaaaataatttttcagccaCTCTTCATCT
ATATTAAAATTGAGCTCCTTCATTTTAGCCACGCTGGTTAAAAGGTTCTC
ATTACGTCAAAGTTGGATTTTTTTGACACACTCTATAGACACCCCTTTAG
GTAGTGTTTGGTTTCCACCTGCCGTTTGGTGGAATAGAAAACGTTGTAAA
TTAAAAAACCTTCCTGTCAACATTGGAAAAGTTTTCAGATCTTCTGATTA
TggctttttaactttttgggttcAGGACAGATATAGAAAGTAGGTGCCAA
ATAAATTATGAAGTCTTTATTCTGTCACAGGAATAGTATAATATTTCATA
TTGTGTAACCATTTAGGTATGTCTTGGAACCAGAATGGTAACCGAAAGTA
TGCAGTCAAATTCGTTGCTGCTGGTTTTATAGTTGGATACACAGCTATAT
GGTCTCTATTCATCATCAAATCCGTCATTCTACCGCCGGAAACAAAGACT
GAAGGAATGATTAAATTTAACTATGATCAAAAGCTCCAAATTCGTAACTT
ACTATTTTCAGGTACGTGTTATATTAACCAGCTTAGTATAAAGGACTCAA
ACCATCGTCTATTACACAATGAGCTGGTATCTCCAGTGAAAGACATAGCA
TaggttgaaaaaattcaaagaagaaATTCTAGAAAGGACTTGCTAAATTT
GATTGATCCTATACTGATAAACGAATTAGGATCCCCTTGTGTTTAGTAAT
TTTCAATTACTTATAATTTATAGGTGATGAGAGTGAAGTTATCAGCTCAA
AACTCATAAAGTCACAAACAACAATTGCACCATTAATATCAACAAATGAT
TCCACCAGTCACCATGGCAACACAACAGAAAATCCAGTTCTAAAAGAATT
ACATGGCATTAAAAACACAATGTTAGAATTCGAAGGACGAATGAAAAAAC
TTGTTGAATGGGAAAATTATCGCCATCAccatgaaaagttgaaaaaactt
GTCTATATATCTGACGGTAAAGCTGATAAAAAGTACAGCATGTTTCGACC
GAATGTTTTAgtggacaaaataaaatttgatagcAGCGCTCATTACAAAG
TAATCATCTTGGTAACATCGTTTGCTAAACATTTCGAGCGCCGCCAGTGG
ATCCGCAAAGCGTGGGGCAACCAAACATTTTGGAATAAAAGTGTGGAAAA
TTGGCAAGTAATATTCAATGTAGGAGCTGTTGATTCTGCTGAAGTCCAGC
AAAAGCTGGTTGAAGAATCTAAGAATCACGGTGATATGTTGATTTTAGAT
GTTCCAGAAAACTTTCATAAACTGTCAGAGAAAGTTATGGCAGCCTTATA
TTGGACATACACAAAATTTAGTTTTGAGTTTGTTTTCAAGACAGATGACG
ATGTTTTCATACATATGCAACGTTTGTTGACAAAACTGAATACGACTTGG
TCGCAAGAAAACTTTGTAGGACAAGGAATGATGAAGCAGCCTGTGGACAG
GAGCAAAGGACGTTATGGCGTTTCCGGTAAAGAATGGCCAGGAAAATACT
TTGACCCTTATTGCAGCGGTGGTGGCTACGTTTTATCGCACTATATAATC
GAACGAATAATACCTCATTTCAATTGGGAAAACCCTTTGAAAATAGATGA
CGCATATATTGGTCATTTGGTCAAGTTAGCAGGTGGAAAAGTCTATCGTG
ATAAAAAGGGCTTTGTAATGTCTAACACATGGTTGGAATATACACCAGAG
TTTGTTGTAACACACCCAATAAAGAAGCTTGAATTCCGCGAATTCGCCGA
AAAGAAAGCTGCTATTGAAATTGGAAAGCTCAAATTACAAGAAGTGCAAA
ATT Coding sequence (CDS) from alignment at scaffold_370:103075..105277+ >TCONS_00062620 ID=TCONS_00062620|Name=TCONS_00062620|organism=Clytia hemisphaerica|type=CDS|length=4032bp|location=Sequence derived from alignment at scaffold_370:103075..105277+ (Clytia hemisphaerica) CAGAAGATGAAAATCCTGTATTGCACTATTCTATTTTTGGTACTGGCTTC TATACATTCAGTTCAAGCAGGTATGTCTTGGAACCAGAATGGTAACCGAA AGTATGCAGTCAAATTCGTTGCTGCTGGTTTTATAGTTGGATACACAGCT ATATGGTCTCTATTCATCATCAAATCCGTCATTCTACCGCCGGAAACAAA GACTGAAGGAATGATTAAATTTAACTATGATCAAAAGCTCCAAATTCGTA ACTTACTATTTTCAGGTGATGAGAGTGAAGTTATCAGCTCAAAACTCATA AAGTCACAAACAACAATTGCACCATTAATATCAACAAATGATTCCACCAG TCACCATGGCAACACAACAGAAAATCCAGTTCTAAAAGAATTACATGGCA TTAAAAACACAATGTTAGAATTCGAAGGACGAATGAAAAAACTTGTTGAA TGGGAAAATTATCGCCATCAccatgaaaagttgaaaaaacttGTCTATAT ATCTGACGGTAAAGCTGATAAAAAGTACAGCATGTTTCGACCGAATGTTT TAgtggacaaaataaaatttgatagcAGCGCTCATTACAAAGTAATCATC TTGGTAACATCGTTTGCTAAACATTTCGAGCGCCGCCAGTGGATCCGCAA AGCGTGGGGCAACCAAACATTTTGGAATAAAAGTGTGGAAAATTGGCAAG TAATATTCAATGTAGGAGCTGTTGATTCTGCTGAAGTCCAGCAAAAGCTG GTTGAAGAATCTAAGAATCACGGTGATATGTTGATTTTAGATGTTCCAGA AAACTTTCATAAACTGTCAGAGAAAGTTATGGCAGCCTTATATTGGACAT ACACAAAATTTAGTTTTGAGTTTGTTTTCAAGACAGATGACGATGTTTTC ATACATATGCAACGTTTGTTGACAAAACTGAATACGACTTGGTCGCAAGA AAACTTTGTAGGACAAGGAATGATGAAGCAGCCTGTGGACAGGAGCAAAG GACGTTATGGCGTTTCCGGTAAAGAATGGCCAGGAAAATACTTTGACCCT TATTGCAGCGGTGGTGGCTACGTTTTATCGCACTATATAATCGAACGAAT AATACCTCATTTCAATTGGGAAAACCCTTTGAAAATAGATGACGCATATA TTGGTCATTTGGTCAAGTTAGCAGGTGGAAAAGTCTATCGTGATAAAAAG GGCTTTGTAATGTCTAACACATGGTTGGAATATACACCAGAGTTTGTTGT AACACACCCAATAAAGAAGCTTGAATTCCGCGAATTCGCCGAAAAGAAAG CTGCTATTGAAATTGGAAAGCTCAAATTACAAGAAGTGCAAAATCAGAAG ATGAAAATCCTGTATTGCACTATTCTATTTTTGGTACTGGCTTCTATACA TTCAGTTCAAGCAGGTATGTCTTGGAACCAGAATGGTAACCGAAAGTATG CAGTCAAATTCGTTGCTGCTGGTTTTATAGTTGGATACACAGCTATATGG TCTCTATTCATCATCAAATCCGTCATTCTACCGCCGGAAACAAAGACTGA AGGAATGATTAAATTTAACTATGATCAAAAGCTCCAAATTCGTAACTTAC TATTTTCAGGTGATGAGAGTGAAGTTATCAGCTCAAAACTCATAAAGTCA CAAACAACAATTGCACCATTAATATCAACAAATGATTCCACCAGTCACCA TGGCAACACAACAGAAAATCCAGTTCTAAAAGAATTACATGGCATTAAAA ACACAATGTTAGAATTCGAAGGACGAATGAAAAAACTTGTTGAATGGGAA AATTATCGCCATCAccatgaaaagttgaaaaaacttGTCTATATATCTGA CGGTAAAGCTGATAAAAAGTACAGCATGTTTCGACCGAATGTTTTAgtgg acaaaataaaatttgatagcAGCGCTCATTACAAAGTAATCATCTTGGTA ACATCGTTTGCTAAACATTTCGAGCGCCGCCAGTGGATCCGCAAAGCGTG GGGCAACCAAACATTTTGGAATAAAAGTGTGGAAAATTGGCAAGTAATAT TCAATGTAGGAGCTGTTGATTCTGCTGAAGTCCAGCAAAAGCTGGTTGAA GAATCTAAGAATCACGGTGATATGTTGATTTTAGATGTTCCAGAAAACTT TCATAAACTGTCAGAGAAAGTTATGGCAGCCTTATATTGGACATACACAA AATTTAGTTTTGAGTTTGTTTTCAAGACAGATGACGATGTTTTCATACAT ATGCAACGTTTGTTGACAAAACTGAATACGACTTGGTCGCAAGAAAACTT TGTAGGACAAGGAATGATGAAGCAGCCTGTGGACAGGAGCAAAGGACGTT ATGGCGTTTCCGGTAAAGAATGGCCAGGAAAATACTTTGACCCTTATTGC AGCGGTGGTGGCTACGTTTTATCGCACTATATAATCGAACGAATAATACC TCATTTCAATTGGGAAAACCCTTTGAAAATAGATGACGCATATATTGGTC ATTTGGTCAAGTTAGCAGGTGGAAAAGTCTATCGTGATAAAAAGGGCTTT GTAATGTCTAACACATGGTTGGAATATACACCAGAGTTTGTTGTAACACA CCCAATAAAGAAGCTTGAATTCCGCGAATTCGCCGAAAAGAAAGCTGCTA TTGAAATTGGAAAGCTCAAATTACAAGAAGTGCAAAATCAGAAGATGAAA ATCCTGTATTGCACTATTCTATTTTTGGTACTGGCTTCTATACATTCAGT TCAAGCAGGTATGTCTTGGAACCAGAATGGTAACCGAAAGTATGCAGTCA AATTCGTTGCTGCTGGTTTTATAGTTGGATACACAGCTATATGGTCTCTA TTCATCATCAAATCCGTCATTCTACCGCCGGAAACAAAGACTGAAGGAAT GATTAAATTTAACTATGATCAAAAGCTCCAAATTCGTAACTTACTATTTT CAGGTGATGAGAGTGAAGTTATCAGCTCAAAACTCATAAAGTCACAAACA ACAATTGCACCATTAATATCAACAAATGATTCCACCAGTCACCATGGCAA CACAACAGAAAATCCAGTTCTAAAAGAATTACATGGCATTAAAAACACAA TGTTAGAATTCGAAGGACGAATGAAAAAACTTGTTGAATGGGAAAATTAT CGCCATCAccatgaaaagttgaaaaaacttGTCTATATATCTGACGGTAA AGCTGATAAAAAGTACAGCATGTTTCGACCGAATGTTTTAgtggacaaaa taaaatttgatagcAGCGCTCATTACAAAGTAATCATCTTGGTAACATCG TTTGCTAAACATTTCGAGCGCCGCCAGTGGATCCGCAAAGCGTGGGGCAA CCAAACATTTTGGAATAAAAGTGTGGAAAATTGGCAAGTAATATTCAATG TAGGAGCTGTTGATTCTGCTGAAGTCCAGCAAAAGCTGGTTGAAGAATCT AAGAATCACGGTGATATGTTGATTTTAGATGTTCCAGAAAACTTTCATAA ACTGTCAGAGAAAGTTATGGCAGCCTTATATTGGACATACACAAAATTTA GTTTTGAGTTTGTTTTCAAGACAGATGACGATGTTTTCATACATATGCAA CGTTTGTTGACAAAACTGAATACGACTTGGTCGCAAGAAAACTTTGTAGG ACAAGGAATGATGAAGCAGCCTGTGGACAGGAGCAAAGGACGTTATGGCG TTTCCGGTAAAGAATGGCCAGGAAAATACTTTGACCCTTATTGCAGCGGT GGTGGCTACGTTTTATCGCACTATATAATCGAACGAATAATACCTCATTT CAATTGGGAAAACCCTTTGAAAATAGATGACGCATATATTGGTCATTTGG TCAAGTTAGCAGGTGGAAAAGTCTATCGTGATAAAAAGGGCTTTGTAATG TCTAACACATGGTTGGAATATACACCAGAGTTTGTTGTAACACACCCAAT AAAGAAGCTTGAATTCCGCGAATTCGCCGAAAAGAAAGCTGCTATTGAAA TTGGAAAGCTCAAATTACAAGAAGTGCAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00062620-exon-scaffold_370-1491911889:103075..103144 | TCONS_00062620-exon-scaffold_370-1491911889:103075..103144 | Clytia hemisphaerica | exon |
TCONS_00062620-exon-scaffold_370-1510915933:103075..103144 | TCONS_00062620-exon-scaffold_370-1510915933:103075..103144 | Clytia hemisphaerica | exon |
TCONS_00062620-exon-scaffold_370-1575043694:103075..103144 | TCONS_00062620-exon-scaffold_370-1575043694:103075..103144 | Clytia hemisphaerica | exon |
TCONS_00062620-exon-scaffold_370-1491911889:103791..103985 | TCONS_00062620-exon-scaffold_370-1491911889:103791..103985 | Clytia hemisphaerica | exon |
TCONS_00062620-exon-scaffold_370-1510915933:103791..103985 | TCONS_00062620-exon-scaffold_370-1510915933:103791..103985 | Clytia hemisphaerica | exon |
TCONS_00062620-exon-scaffold_370-1575043694:103791..103985 | TCONS_00062620-exon-scaffold_370-1575043694:103791..103985 | Clytia hemisphaerica | exon |
TCONS_00062620-exon-scaffold_370-1491911889:104198..105277 | TCONS_00062620-exon-scaffold_370-1491911889:104198..105277 | Clytia hemisphaerica | exon |
TCONS_00062620-exon-scaffold_370-1510915933:104198..105277 | TCONS_00062620-exon-scaffold_370-1510915933:104198..105277 | Clytia hemisphaerica | exon |
TCONS_00062620-exon-scaffold_370-1575043694:104198..105277 | TCONS_00062620-exon-scaffold_370-1575043694:104198..105277 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_370 | supercontig | scaffold_370:103075..105277 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR002659 | Glyco_trans_31 |
Vocabulary: Cellular Component
Term | Definition |
GO:0016020 | membrane |
Vocabulary: Molecular Function
Term | Definition |
GO:0008378 | galactosyltransferase activity |
Vocabulary: Biological Process
Term | Definition |
GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006486 |
protein glycosylation |
cellular_component |
GO:0016020 |
membrane |
molecular_function |
GO:0008378 |
galactosyltransferase activity |
Blast
BLAST of TCONS_00062620 vs. Swiss-Prot (Human)
Match: B3GN6 (Acetylgalactosaminyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase OS=Homo sapiens GN=B3GNT6 PE=1 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 8.983e-19 Identity = 60/203 (29.56%), Postives = 98/203 (48.28%), Query Frame = 1
Query: 592 VIILVTSFAKHFERRQWIRKAWGNQ-TFWNKSVENWQVIFNVGAVDSAEVQQKLVE----ESKNHGDMLILDVPENFHKLSEKVMAALYWTYTKFSF-EFVFKTDDDVFIHMQRLLTKLNTTWSQEN-FVGQGMMKQ-PVDRSKGRYGVSGKEWPGKYFDPYCSGGGYVLSHYIIERIIPHFNWENPLKIDDAYIGHLVKLAG 1176
+++ V S +H+ERR+ IR+ WG + ++ + V ++ G D A + +L E E++ HGD+L + F L+ K + L W + F+ DDDVF+H ++ L + F GQ M P+ S +Y V + +PG + YCSGGG++LS + IDDAY+G ++ AG
Sbjct: 119 LLLAVKSAPEHYERRELIRRTWGQERSYGGRPVRRLFLLGTPGPEDEARAE-RLAELVALEAREHGDVLQWAFADTFLNLTLKHLHLLDWLAARCPHARFLLSGDDDVFVHTANVVRFLQAQPPGRHLFSGQLMEGSVPIRDSWSKYFVPPQLFPGSAYPVYCSGGGFLLSGPTARALRAAARHTPLFPIDDAYMGMCLERAG 320
The following BLAST results are available for this feature:
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