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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062620 ID=TCONS_00062620|Name=TCONS_00062620|organism=Clytia hemisphaerica|type=transcript|length=1345bp
CAGAAGATGAAAATCCTGTATTGCACTATTCTATTTTTGGTACTGGCTTC
TATACATTCAGTTCAAGCAGGTATGTCTTGGAACCAGAATGGTAACCGAA
AGTATGCAGTCAAATTCGTTGCTGCTGGTTTTATAGTTGGATACACAGCT
ATATGGTCTCTATTCATCATCAAATCCGTCATTCTACCGCCGGAAACAAA
GACTGAAGGAATGATTAAATTTAACTATGATCAAAAGCTCCAAATTCGTA
ACTTACTATTTTCAGGTGATGAGAGTGAAGTTATCAGCTCAAAACTCATA
AAGTCACAAACAACAATTGCACCATTAATATCAACAAATGATTCCACCAG
TCACCATGGCAACACAACAGAAAATCCAGTTCTAAAAGAATTACATGGCA
TTAAAAACACAATGTTAGAATTCGAAGGACGAATGAAAAAACTTGTTGAA
TGGGAAAATTATCGCCATCAccatgaaaagttgaaaaaacttGTCTATAT
ATCTGACGGTAAAGCTGATAAAAAGTACAGCATGTTTCGACCGAATGTTT
TAgtggacaaaataaaatttgatagcAGCGCTCATTACAAAGTAATCATC
TTGGTAACATCGTTTGCTAAACATTTCGAGCGCCGCCAGTGGATCCGCAA
AGCGTGGGGCAACCAAACATTTTGGAATAAAAGTGTGGAAAATTGGCAAG
TAATATTCAATGTAGGAGCTGTTGATTCTGCTGAAGTCCAGCAAAAGCTG
GTTGAAGAATCTAAGAATCACGGTGATATGTTGATTTTAGATGTTCCAGA
AAACTTTCATAAACTGTCAGAGAAAGTTATGGCAGCCTTATATTGGACAT
ACACAAAATTTAGTTTTGAGTTTGTTTTCAAGACAGATGACGATGTTTTC
ATACATATGCAACGTTTGTTGACAAAACTGAATACGACTTGGTCGCAAGA
AAACTTTGTAGGACAAGGAATGATGAAGCAGCCTGTGGACAGGAGCAAAG
GACGTTATGGCGTTTCCGGTAAAGAATGGCCAGGAAAATACTTTGACCCT
TATTGCAGCGGTGGTGGCTACGTTTTATCGCACTATATAATCGAACGAAT
AATACCTCATTTCAATTGGGAAAACCCTTTGAAAATAGATGACGCATATA
TTGGTCATTTGGTCAAGTTAGCAGGTGGAAAAGTCTATCGTGATAAAAAG
GGCTTTGTAATGTCTAACACATGGTTGGAATATACACCAGAGTTTGTTGT
AACACACCCAATAAAGAAGCTTGAATTCCGCGAATTCGCCGAAAAGAAAG
CTGCTATTGAAATTGGAAAGCTCAAATTACAAGAAGTGCAAAATT Run BLAST on NCBI protein sequence of TCONS_00062620-protein >TCONS_00062620-protein ID=TCONS_00062620-protein|Name=TCONS_00062620-protein|organism=Clytia hemisphaerica|type=polypeptide|length=448bp
QKMKILYCTILFLVLASIHSVQAGMSWNQNGNRKYAVKFVAAGFIVGYTA
IWSLFIIKSVILPPETKTEGMIKFNYDQKLQIRNLLFSGDESEVISSKLI
KSQTTIAPLISTNDSTSHHGNTTENPVLKELHGIKNTMLEFEGRMKKLVE
WENYRHHHEKLKKLVYISDGKADKKYSMFRPNVLVDKIKFDSSAHYKVII
LVTSFAKHFERRQWIRKAWGNQTFWNKSVENWQVIFNVGAVDSAEVQQKL
VEESKNHGDMLILDVPENFHKLSEKVMAALYWTYTKFSFEFVFKTDDDVF
IHMQRLLTKLNTTWSQENFVGQGMMKQPVDRSKGRYGVSGKEWPGKYFDP
YCSGGGYVLSHYIIERIIPHFNWENPLKIDDAYIGHLVKLAGGKVYRDKK
GFVMSNTWLEYTPEFVVTHPIKKLEFREFAEKKAAIEIGKLKLQEVQN Run BLAST on NCBI transcript from alignment at scaffold_370:103075..105277+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062620 ID=TCONS_00062620|Name=TCONS_00062620|organism=Clytia hemisphaerica|type=transcript|length=2203bp|location=Sequence derived from alignment at scaffold_370:103075..105277+ (Clytia hemisphaerica)
CAGAAGATGAAAATCCTGTATTGCACTATTCTATTTTTGGTACTGGCTTC
TATACATTCAGTTCAAGCAGGTAAGGATTACTTAAGAATATTCTATCCAT
TGTACTAACGCAATTTGTAATAAACGCTACACTTTGTAATGCCTAACGCA
ATTTGTAATACACCTttacgcactttgtaataaaaactgacacactttgt
aataaaaaaaacgaCGTGCTGCTTTGTAATACAAAAAGCTGACGCGCTTT
GTAATAGCATCTGACGCACTTAGTACATCCATTACGATTATTGACCTCCC
TTATCCTACCTAAGGTTATAATAACGTCATGACAGACCAGGGTGTAAAAT
TGGACACCCTGTTCCAGCaggtaaaataatttttcagccaCTCTTCATCT
ATATTAAAATTGAGCTCCTTCATTTTAGCCACGCTGGTTAAAAGGTTCTC
ATTACGTCAAAGTTGGATTTTTTTGACACACTCTATAGACACCCCTTTAG
GTAGTGTTTGGTTTCCACCTGCCGTTTGGTGGAATAGAAAACGTTGTAAA
TTAAAAAACCTTCCTGTCAACATTGGAAAAGTTTTCAGATCTTCTGATTA
TggctttttaactttttgggttcAGGACAGATATAGAAAGTAGGTGCCAA
ATAAATTATGAAGTCTTTATTCTGTCACAGGAATAGTATAATATTTCATA
TTGTGTAACCATTTAGGTATGTCTTGGAACCAGAATGGTAACCGAAAGTA
TGCAGTCAAATTCGTTGCTGCTGGTTTTATAGTTGGATACACAGCTATAT
GGTCTCTATTCATCATCAAATCCGTCATTCTACCGCCGGAAACAAAGACT
GAAGGAATGATTAAATTTAACTATGATCAAAAGCTCCAAATTCGTAACTT
ACTATTTTCAGGTACGTGTTATATTAACCAGCTTAGTATAAAGGACTCAA
ACCATCGTCTATTACACAATGAGCTGGTATCTCCAGTGAAAGACATAGCA
TaggttgaaaaaattcaaagaagaaATTCTAGAAAGGACTTGCTAAATTT
GATTGATCCTATACTGATAAACGAATTAGGATCCCCTTGTGTTTAGTAAT
TTTCAATTACTTATAATTTATAGGTGATGAGAGTGAAGTTATCAGCTCAA
AACTCATAAAGTCACAAACAACAATTGCACCATTAATATCAACAAATGAT
TCCACCAGTCACCATGGCAACACAACAGAAAATCCAGTTCTAAAAGAATT
ACATGGCATTAAAAACACAATGTTAGAATTCGAAGGACGAATGAAAAAAC
TTGTTGAATGGGAAAATTATCGCCATCAccatgaaaagttgaaaaaactt
GTCTATATATCTGACGGTAAAGCTGATAAAAAGTACAGCATGTTTCGACC
GAATGTTTTAgtggacaaaataaaatttgatagcAGCGCTCATTACAAAG
TAATCATCTTGGTAACATCGTTTGCTAAACATTTCGAGCGCCGCCAGTGG
ATCCGCAAAGCGTGGGGCAACCAAACATTTTGGAATAAAAGTGTGGAAAA
TTGGCAAGTAATATTCAATGTAGGAGCTGTTGATTCTGCTGAAGTCCAGC
AAAAGCTGGTTGAAGAATCTAAGAATCACGGTGATATGTTGATTTTAGAT
GTTCCAGAAAACTTTCATAAACTGTCAGAGAAAGTTATGGCAGCCTTATA
TTGGACATACACAAAATTTAGTTTTGAGTTTGTTTTCAAGACAGATGACG
ATGTTTTCATACATATGCAACGTTTGTTGACAAAACTGAATACGACTTGG
TCGCAAGAAAACTTTGTAGGACAAGGAATGATGAAGCAGCCTGTGGACAG
GAGCAAAGGACGTTATGGCGTTTCCGGTAAAGAATGGCCAGGAAAATACT
TTGACCCTTATTGCAGCGGTGGTGGCTACGTTTTATCGCACTATATAATC
GAACGAATAATACCTCATTTCAATTGGGAAAACCCTTTGAAAATAGATGA
CGCATATATTGGTCATTTGGTCAAGTTAGCAGGTGGAAAAGTCTATCGTG
ATAAAAAGGGCTTTGTAATGTCTAACACATGGTTGGAATATACACCAGAG
TTTGTTGTAACACACCCAATAAAGAAGCTTGAATTCCGCGAATTCGCCGA
AAAGAAAGCTGCTATTGAAATTGGAAAGCTCAAATTACAAGAAGTGCAAA
ATT Coding sequence (CDS) from alignment at scaffold_370:103075..105277+ >TCONS_00062620 ID=TCONS_00062620|Name=TCONS_00062620|organism=Clytia hemisphaerica|type=CDS|length=4032bp|location=Sequence derived from alignment at scaffold_370:103075..105277+ (Clytia hemisphaerica)
CAGAAGATGAAAATCCTGTATTGCACTATTCTATTTTTGGTACTGGCTTC
TATACATTCAGTTCAAGCAGGTATGTCTTGGAACCAGAATGGTAACCGAA
AGTATGCAGTCAAATTCGTTGCTGCTGGTTTTATAGTTGGATACACAGCT
ATATGGTCTCTATTCATCATCAAATCCGTCATTCTACCGCCGGAAACAAA
GACTGAAGGAATGATTAAATTTAACTATGATCAAAAGCTCCAAATTCGTA
ACTTACTATTTTCAGGTGATGAGAGTGAAGTTATCAGCTCAAAACTCATA
AAGTCACAAACAACAATTGCACCATTAATATCAACAAATGATTCCACCAG
TCACCATGGCAACACAACAGAAAATCCAGTTCTAAAAGAATTACATGGCA
TTAAAAACACAATGTTAGAATTCGAAGGACGAATGAAAAAACTTGTTGAA
TGGGAAAATTATCGCCATCAccatgaaaagttgaaaaaacttGTCTATAT
ATCTGACGGTAAAGCTGATAAAAAGTACAGCATGTTTCGACCGAATGTTT
TAgtggacaaaataaaatttgatagcAGCGCTCATTACAAAGTAATCATC
TTGGTAACATCGTTTGCTAAACATTTCGAGCGCCGCCAGTGGATCCGCAA
AGCGTGGGGCAACCAAACATTTTGGAATAAAAGTGTGGAAAATTGGCAAG
TAATATTCAATGTAGGAGCTGTTGATTCTGCTGAAGTCCAGCAAAAGCTG
GTTGAAGAATCTAAGAATCACGGTGATATGTTGATTTTAGATGTTCCAGA
AAACTTTCATAAACTGTCAGAGAAAGTTATGGCAGCCTTATATTGGACAT
ACACAAAATTTAGTTTTGAGTTTGTTTTCAAGACAGATGACGATGTTTTC
ATACATATGCAACGTTTGTTGACAAAACTGAATACGACTTGGTCGCAAGA
AAACTTTGTAGGACAAGGAATGATGAAGCAGCCTGTGGACAGGAGCAAAG
GACGTTATGGCGTTTCCGGTAAAGAATGGCCAGGAAAATACTTTGACCCT
TATTGCAGCGGTGGTGGCTACGTTTTATCGCACTATATAATCGAACGAAT
AATACCTCATTTCAATTGGGAAAACCCTTTGAAAATAGATGACGCATATA
TTGGTCATTTGGTCAAGTTAGCAGGTGGAAAAGTCTATCGTGATAAAAAG
GGCTTTGTAATGTCTAACACATGGTTGGAATATACACCAGAGTTTGTTGT
AACACACCCAATAAAGAAGCTTGAATTCCGCGAATTCGCCGAAAAGAAAG
CTGCTATTGAAATTGGAAAGCTCAAATTACAAGAAGTGCAAAATCAGAAG
ATGAAAATCCTGTATTGCACTATTCTATTTTTGGTACTGGCTTCTATACA
TTCAGTTCAAGCAGGTATGTCTTGGAACCAGAATGGTAACCGAAAGTATG
CAGTCAAATTCGTTGCTGCTGGTTTTATAGTTGGATACACAGCTATATGG
TCTCTATTCATCATCAAATCCGTCATTCTACCGCCGGAAACAAAGACTGA
AGGAATGATTAAATTTAACTATGATCAAAAGCTCCAAATTCGTAACTTAC
TATTTTCAGGTGATGAGAGTGAAGTTATCAGCTCAAAACTCATAAAGTCA
CAAACAACAATTGCACCATTAATATCAACAAATGATTCCACCAGTCACCA
TGGCAACACAACAGAAAATCCAGTTCTAAAAGAATTACATGGCATTAAAA
ACACAATGTTAGAATTCGAAGGACGAATGAAAAAACTTGTTGAATGGGAA
AATTATCGCCATCAccatgaaaagttgaaaaaacttGTCTATATATCTGA
CGGTAAAGCTGATAAAAAGTACAGCATGTTTCGACCGAATGTTTTAgtgg
acaaaataaaatttgatagcAGCGCTCATTACAAAGTAATCATCTTGGTA
ACATCGTTTGCTAAACATTTCGAGCGCCGCCAGTGGATCCGCAAAGCGTG
GGGCAACCAAACATTTTGGAATAAAAGTGTGGAAAATTGGCAAGTAATAT
TCAATGTAGGAGCTGTTGATTCTGCTGAAGTCCAGCAAAAGCTGGTTGAA
GAATCTAAGAATCACGGTGATATGTTGATTTTAGATGTTCCAGAAAACTT
TCATAAACTGTCAGAGAAAGTTATGGCAGCCTTATATTGGACATACACAA
AATTTAGTTTTGAGTTTGTTTTCAAGACAGATGACGATGTTTTCATACAT
ATGCAACGTTTGTTGACAAAACTGAATACGACTTGGTCGCAAGAAAACTT
TGTAGGACAAGGAATGATGAAGCAGCCTGTGGACAGGAGCAAAGGACGTT
ATGGCGTTTCCGGTAAAGAATGGCCAGGAAAATACTTTGACCCTTATTGC
AGCGGTGGTGGCTACGTTTTATCGCACTATATAATCGAACGAATAATACC
TCATTTCAATTGGGAAAACCCTTTGAAAATAGATGACGCATATATTGGTC
ATTTGGTCAAGTTAGCAGGTGGAAAAGTCTATCGTGATAAAAAGGGCTTT
GTAATGTCTAACACATGGTTGGAATATACACCAGAGTTTGTTGTAACACA
CCCAATAAAGAAGCTTGAATTCCGCGAATTCGCCGAAAAGAAAGCTGCTA
TTGAAATTGGAAAGCTCAAATTACAAGAAGTGCAAAATCAGAAGATGAAA
ATCCTGTATTGCACTATTCTATTTTTGGTACTGGCTTCTATACATTCAGT
TCAAGCAGGTATGTCTTGGAACCAGAATGGTAACCGAAAGTATGCAGTCA
AATTCGTTGCTGCTGGTTTTATAGTTGGATACACAGCTATATGGTCTCTA
TTCATCATCAAATCCGTCATTCTACCGCCGGAAACAAAGACTGAAGGAAT
GATTAAATTTAACTATGATCAAAAGCTCCAAATTCGTAACTTACTATTTT
CAGGTGATGAGAGTGAAGTTATCAGCTCAAAACTCATAAAGTCACAAACA
ACAATTGCACCATTAATATCAACAAATGATTCCACCAGTCACCATGGCAA
CACAACAGAAAATCCAGTTCTAAAAGAATTACATGGCATTAAAAACACAA
TGTTAGAATTCGAAGGACGAATGAAAAAACTTGTTGAATGGGAAAATTAT
CGCCATCAccatgaaaagttgaaaaaacttGTCTATATATCTGACGGTAA
AGCTGATAAAAAGTACAGCATGTTTCGACCGAATGTTTTAgtggacaaaa
taaaatttgatagcAGCGCTCATTACAAAGTAATCATCTTGGTAACATCG
TTTGCTAAACATTTCGAGCGCCGCCAGTGGATCCGCAAAGCGTGGGGCAA
CCAAACATTTTGGAATAAAAGTGTGGAAAATTGGCAAGTAATATTCAATG
TAGGAGCTGTTGATTCTGCTGAAGTCCAGCAAAAGCTGGTTGAAGAATCT
AAGAATCACGGTGATATGTTGATTTTAGATGTTCCAGAAAACTTTCATAA
ACTGTCAGAGAAAGTTATGGCAGCCTTATATTGGACATACACAAAATTTA
GTTTTGAGTTTGTTTTCAAGACAGATGACGATGTTTTCATACATATGCAA
CGTTTGTTGACAAAACTGAATACGACTTGGTCGCAAGAAAACTTTGTAGG
ACAAGGAATGATGAAGCAGCCTGTGGACAGGAGCAAAGGACGTTATGGCG
TTTCCGGTAAAGAATGGCCAGGAAAATACTTTGACCCTTATTGCAGCGGT
GGTGGCTACGTTTTATCGCACTATATAATCGAACGAATAATACCTCATTT
CAATTGGGAAAACCCTTTGAAAATAGATGACGCATATATTGGTCATTTGG
TCAAGTTAGCAGGTGGAAAAGTCTATCGTGATAAAAAGGGCTTTGTAATG
TCTAACACATGGTTGGAATATACACCAGAGTTTGTTGTAACACACCCAAT
AAAGAAGCTTGAATTCCGCGAATTCGCCGAAAAGAAAGCTGCTATTGAAA
TTGGAAAGCTCAAATTACAAGAAGTGCAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062620-exon-scaffold_370-1491911889:103075..103144 | TCONS_00062620-exon-scaffold_370-1491911889:103075..103144 | Clytia hemisphaerica | exon |
| TCONS_00062620-exon-scaffold_370-1510915933:103075..103144 | TCONS_00062620-exon-scaffold_370-1510915933:103075..103144 | Clytia hemisphaerica | exon |
| TCONS_00062620-exon-scaffold_370-1575043694:103075..103144 | TCONS_00062620-exon-scaffold_370-1575043694:103075..103144 | Clytia hemisphaerica | exon |
| TCONS_00062620-exon-scaffold_370-1491911889:103791..103985 | TCONS_00062620-exon-scaffold_370-1491911889:103791..103985 | Clytia hemisphaerica | exon |
| TCONS_00062620-exon-scaffold_370-1510915933:103791..103985 | TCONS_00062620-exon-scaffold_370-1510915933:103791..103985 | Clytia hemisphaerica | exon |
| TCONS_00062620-exon-scaffold_370-1575043694:103791..103985 | TCONS_00062620-exon-scaffold_370-1575043694:103791..103985 | Clytia hemisphaerica | exon |
| TCONS_00062620-exon-scaffold_370-1491911889:104198..105277 | TCONS_00062620-exon-scaffold_370-1491911889:104198..105277 | Clytia hemisphaerica | exon |
| TCONS_00062620-exon-scaffold_370-1510915933:104198..105277 | TCONS_00062620-exon-scaffold_370-1510915933:104198..105277 | Clytia hemisphaerica | exon |
| TCONS_00062620-exon-scaffold_370-1575043694:104198..105277 | TCONS_00062620-exon-scaffold_370-1575043694:104198..105277 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_370 | supercontig | scaffold_370:103075..105277 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002659 | Glyco_trans_31 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008378 | galactosyltransferase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006486 |
protein glycosylation |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008378 |
galactosyltransferase activity |
Blast
BLAST of TCONS_00062620 vs. Swiss-Prot (Human)
Match: B3GN6 (Acetylgalactosaminyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase OS=Homo sapiens GN=B3GNT6 PE=1 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 8.983e-19 Identity = 60/203 (29.56%), Postives = 98/203 (48.28%), Query Frame = 1
Query: 592 VIILVTSFAKHFERRQWIRKAWGNQ-TFWNKSVENWQVIFNVGAVDSAEVQQKLVE----ESKNHGDMLILDVPENFHKLSEKVMAALYWTYTKFSF-EFVFKTDDDVFIHMQRLLTKLNTTWSQEN-FVGQGMMKQ-PVDRSKGRYGVSGKEWPGKYFDPYCSGGGYVLSHYIIERIIPHFNWENPLKIDDAYIGHLVKLAG 1176
+++ V S +H+ERR+ IR+ WG + ++ + V ++ G D A + +L E E++ HGD+L + F L+ K + L W + F+ DDDVF+H ++ L + F GQ M P+ S +Y V + +PG + YCSGGG++LS + IDDAY+G ++ AG
Sbjct: 119 LLLAVKSAPEHYERRELIRRTWGQERSYGGRPVRRLFLLGTPGPEDEARAE-RLAELVALEAREHGDVLQWAFADTFLNLTLKHLHLLDWLAARCPHARFLLSGDDDVFVHTANVVRFLQAQPPGRHLFSGQLMEGSVPIRDSWSKYFVPPQLFPGSAYPVYCSGGGFLLSGPTARALRAAARHTPLFPIDDAYMGMCLERAG 320
The following BLAST results are available for this feature:
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