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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062614 ID=TCONS_00062614|Name=TCONS_00062614|organism=Clytia hemisphaerica|type=transcript|length=4550bpRun BLAST on NCBI transcript from alignment at scaffold_370:47651..70372+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062614 ID=TCONS_00062614|Name=TCONS_00062614|organism=Clytia hemisphaerica|type=transcript|length=22722bp|location=Sequence derived from alignment at scaffold_370:47651..70372+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00062614 vs. Swiss-Prot (Human)
Match: SDK1 (Protein sidekick-1 OS=Homo sapiens GN=SDK1 PE=2 SV=3) HSP 1 Score: 513.842 bits (1322), Expect = 8.639e-152 Identity = 403/1443 (27.93%), Postives = 647/1443 (44.84%), Query Frame = 1
Query: 295 VTLPCSAEGTPSPKIVAWLFDGKRVNTRSGRHFLRPNGDLYITNTQKSDSGTYQCVAQNTVGGIASTKKKLFVTYFDYYNKGNAPEQVSKSENEYYIAKVPNIQIYPRELTRHTWYKDGSILKESERAQISEHGDLYLSQLKYQDRGTYKLTVENTFMSTLGKTYAEQDVVEF-QLTIQGEIRPSE---PTVIYSTGRKT--AGEKQDPFVIIECFITGVASGAPSIAWIKEDPFGGKPKTIFNGGRYEKQLG--GRRLKITDPNNLEDNGMYKCLPEYGLSTYEKQAKMIDLVVSSIPVFSTKP-GEYEAYTDSSATLNCLVTGLPTINITWYRNGIPMTHSSD-SHAVLKNNSIELIGLNWEDNGIFQCGAENYAGLFFVNQQLKVQNISAEIIGWSPKYYIHFNLAATIPCKTIGAPKPKITWLVNSTKIEQNS----KYSFNKNGSLVIQNIQASDQGKYTCTASNYIDTDYKSADVYAVVKTRISKFPGKEFPVVKGDSPIIPCEVEHDKRVNYTREWRKVGITI-PKTDKRYVMMEDGGLRVNFVKLDDTNLEFSCHIFADDANLTAATVLVMESRPFQPSSPRVNGEPKPNS-----LDLIWDAPDDGGSPIISYLLKMKNYTQTMYYKLADIDAPQTTYTVNNLQAGSKYRFQVAAKNKFGYGEYSAEATVWLETKTTAPSGPPLEFRSVDADTDYIVLRWEPPLPEKRNGQLDGYIFRYRVV-TTSSYVTRKLNSLDTEYKM-DGLPLFTKFEVQIAASNEIGIGPYTDSVFIETLQGKPVAPPTDVKVSIVNSTTVLVSFKSPRQALWNGKLTRIVALYWPPDVPEDQQTYETNYDTSNIHSQQFYLPRLEADKEYVLAVQVKTTGGPSPGSEKVQFKTTEGRPDSVRDLTVLKTYSDAFSVTWKPPLKPGGTLQGYKCEYRIASGKWVEVKEIIKGTEIGVVVKNLEPLTKYEVRVLAYTNAGDGSWEVRSATTIEKPELPHAPSSLKAYNVWGTVIALGWTPGYSGRAVILQYQIQYNNDTDYHQNPSRALWREMKNL-TKILENPANLTYLQPNAVYRFRMRAYNRLGASGWSNISVDISTGEGVPSSKPRGLIVTAPARQTLEIKWIPPPRDTWNSDSVKYQFLIHPKAQDLKKISRDQYHVLTDNEATSYAASGLQRFTMYNVTMRLFNNKGYGPWSKHIFFRTSEDYPSGYPMNVRADVQSASSVLVKWGPVPEDQRNGFIIGYKVFYELKGFPTTEMFEDFPGNTTFSGTITKLNGYTDYEFRVMAYTKVG-GLLKSPPVTRKTFEGKPGKPTNVRFIDVNYQYVQLEWDPPLNPNGRLSRYRVNYRQKGSS-GDWTQVPVSTFNPRSARVNGMVFNRVYEFKIEATNSIGWGEPAIEEVLVTTERSAAQSPVILAIPSTSIRHTSVIVEWRARFDGNAPIRGYNL 4548
+ L C AEG+ P W+ D + T S + I + QK D+G Y+CV +N +G + K ++ V Y + + + VS+ I + I YPR + TW+++G + S R I+ L + D G Y ++ + + E F L+I ++ E PT++ G ++ AG + +EC + S+ W + NG R L GRRL I++P + D G Y C S +E L + P F+ +P A + + + C G+P + WY++ I ++ + + VL + + + L ED+GIFQC A N G + L V NI+ + + A + C+ GAPKP ITW + + S ++ ++G L I + D G YTC A+N + SA + +T I P ++ V+KG + + C HD RV+ W+K + + P + R V+ +DG L ++ D ++SC I ++ N + L + P P + V+ PNS + L W P DG SPI+ Y++++ L+++ T TV+ L Y+F+V A N+ G G+YSAE T L PS PP + I+++W+PP + NG L GYI RYR+ Y R + S + Y + L ++T++E+Q+AA N G+G ++ +V TLQG P APP +V+ VNSTT+ + P Q NG L WP D PE D +H ++ L+ Y +V TT G P S T E +P +V L+ + + V+W+ PL+ G + GY+ + + + + T ++ L LT Y + V A T G G + ++ P+LP APS+L N+ L + PGY G+ I ++ ++ + L+ E ++LE P NLT P YRFRM+ N +G S +S S I T + P P + V + +L ++W+P P +N + + I DL+ + Q V++D + L+ + Y + M+ FN G GPWS+ + RT E PS P NV A+ S++ +L+ W VPE +NG I+GYK+ + K GN T S + L + YE +V+A+T++G G+ +P + +T + PG P + F +V V++ W PP PNG + Y++ YR SS +T V V R + Y F++ A GWGEP V+ T +R P L +P + S+ ++W DG +PIR + +
Sbjct: 122 LVLTCLAEGS-WPLEFKWMRDDSELTTYSSEY------KYIIPSLQKLDAGFYRCVVRNRMGALLQRKSEVQVAYMGSFMDTDQRKTVSQGRAA--ILNLLPITSYPRP--QVTWFREGHKIIPSNRIAITLENQLVILATTTSDAGAY-------YVQAVNEKNGENKTSPFIHLSIARDVGTPETMAPTIVVPPGNRSVVAGSSE---TTLECIASARPVEDLSVTWKR------------NGVRITSGLHSFGRRLTISNPTS-ADTGPYVCEAALPGSAFEPARATAFLFIIEPPYFTAEPESRISAEVEETVDIGCQAMGVPLPTLQWYKDAISISRLQNPRYKVLASGGLRIQKLRPEDSGIFQCFASNEGGEIQTHTYLDVTNIAPVFTQRPVDTTVTDGMTAILRCEVSGAPKPAITWKRENHILASGSVRIPRFMLLESGGLQIAPVFIQDAGNYTCYAANTEGSLNASATLTVWNRTSIVH-PPEDHVVIKGTTATLHCGATHDPRVSLRYVWKKDNVALTPSSTSRIVVEKDGSLLISQTWSGDIG-DYSCEIVSEGGNDSRMARLEVIELPHSPQNLLVS----PNSSHSHAVVLSWVRPFDGNSPILYYIVELSENNSPWKVHLSNVGPEMTGVTVSGLTPARTYQFRVCAVNEVGRGQYSAE-TSRLMLPEEPPSAPPKNIVASGRTNQSIMVQWQPPPETEHNGVLRGYILRYRLAGLPGEYQQRNITSPEVNYCLVTDLIIWTQYEIQVAAYNGAGLGVFSRAVTEYTLQGVPTAPPQNVQTEAVNSTTIQFLWNPPPQQFINGINQGYKLLAWPADAPEAVTVVTIAPDFHGVH--HGHITNLKKFTAYFTSVLCFTTPGDGPPSTPQLVWTQEDKPGAVGHLSFTEILDTSLKVSWQEPLEKNGIITGYQISWEVYGRNDSRLTHTLNSTTHEYKIQGLSSLTTYTIDVAAVTAVGTGLVTSSTISSGVPPDLPGAPSNLVISNISPRSATLQFRPGYDGKTSISRWIVEGQVGAIGDEEEWVTLYEEENEPDAQMLEIP-NLT---PYTHYRFRMKQVNIVGPSPYSPSSRVIQTLQAPPDVAPTSVTVRTASETSLRLRWVPLPDSQYNGNPESVGYRIKYWRSDLQSSAVAQ--VVSDRLEREFTIEELEEWMEYELQMQAFNAVGAGPWSEVVRGRTRESVPSAAPENVSAEAVSSTQILLTWTSVPEQDQNGLILGYKILFRAKDLDPEPRSHIVRGNHTQSALLAGLRKFVLYELQVLAFTRIGNGVPSTPLILERTKDDAPGPPVRLVFPEVRLTSVRIVWQPPEEPNGIILGYQIAYRLASSSPHTFTTVEVGA-TVRQFTATDLAPESAYIFRLSAKTRQGWGEPLEATVITTEKRERPAPPRELLVPQAEVTARSLRLQWVPGSDGASPIRYFTM 1514 HSP 2 Score: 178.333 bits (451), Expect = 1.189e-44 Identity = 204/843 (24.20%), Postives = 351/843 (41.64%), Query Frame = 1
Query: 2128 TMYYKLADIDAPQTTYTVNNLQAGSKYRFQVAAKNKFGYGEYSAEATVWLETKTTAPSGPPLEFRSVDADTDYIVLRWEPPLPEKR---NGQLDGYIFRY-RVVTTSSYVTRKL-NSLDTEYKMDGLPLFTKFEVQIAASNEIGIGPYTDSVFIETLQGKPVAPPTDVKVSIVNSTTVLVSFKSPRQALWNGKLTRIVALYWPPDVPEDQQTYETNYDTSNIHSQQFYLPRLEADKEYVLAVQVKT-TGGPSPGSEKVQFKTTEGRPDSVRDLTVLKTYSDAFSVTWKPPLKPGGTLQGYKCEYRIASGKWVEVKEIIKGTEIGVVVK-----NLEPLTKYEVRVLAYTNAGDGSWEVRSATTIEKPELPHAPSSL--KAYNVWGTVIALGWTPGYSGRAVILQYQIQYNNDTDYHQNPSRALWREMKNLTKILENPANLTYLQPNAVYRFRMRAYNRLGASGWSNISVDISTGEGVPSSKPRGLIVTAPARQTLEIKWIPPPRDTWNSDSVKYQF-----------------LIHPKAQDLKKISRDQYHVL-TDNEATSYAASGLQRFTMYNVTMRLFNNKGYGPWSKHIFFRTSEDYPSGYPMNVRADVQSASSVLVKWGPVPEDQRNGFIIGYKVFY-ELKGFPTTEMFED--FPGNTTFSGTITKLNGYTDYEFRVMAYTKVGGLLKSPPVTRKTFEGKPGKPTNVRFIDVNYQYVQLEWDPPLNPNGRLSRYRVNYRQ----KGSSGDWTQVPVSTFNPRSARVNGMVFNRVYEFKIEATNSIGWGEPAIEEVLVTTERSAAQSPVILAIPSTSIRHTSVIVEWRARFDGNAPIRGY 4542
T+Y + + DA + NL + YRF++ N G YS + V ++T P P A + LRW P LP+ + N + GY +Y R SS V + + + L+ E+ ++ L + ++E+Q+ A N +G GP+++ V T + P A P +V V+ST +L+++ S + NG + L+ D+ + +++ + H+Q L L Y L V T G P + + +T + P L + + + W+PP +P G + GY+ YR+AS E+G V+ +L P + Y R+ A T G G + T EK E P P L V + L W PG G + I + +Q + R W+ + + L+P Y+ R++A N +G S +S+ + ++T + VP P + T ++ I+W PP ++ N Y+ L +P A + ++ + + + + +T + L+++ Y V M +N G P S + E P+ P NV+ +AS + V W P P + +NG I GYK++Y E TE + P + L +T Y + A+ G KS P +T + PG P+ + F ++ + + W P NG L YRV Y +G S T V V R +V + Y F+++A +I +G + + SP + + ++ + + ++W G+ P GY
Sbjct: 1120 TLYEEENEPDA--QMLEIPNLTPYTHYRFRMKQVNIVGPSPYSPSSRV-IQTLQAPPDVAPTSVTVRTASETSLRLRWVP-LPDSQYNGNPESVGYRIKYWRSDLQSSAVAQVVSDRLEREFTIEELEEWMEYELQMQAFNAVGAGPWSEVVRGRTRESVPSAAPENVSAEAVSSTQILLTWTSVPEQDQNGLILGYKILFRAKDLDPEPRSHIVRGN----HTQSALLAGLRKFVLYELQVLAFTRIGNGVPSTPLILERTKDDAPGPPVRLVFPEVRLTSVRIVWQPPEEPNGIILGYQIAYRLASSS----PHTFTTVEVGATVRQFTATDLAPESAYIFRLSAKTRQGWGEPLEATVITTEKRERPAPPRELLVPQAEVTARSLRLQWVPGSDGASPIRYFTMQV-------RELPRGEWQTYSSSISHEATACVVDRLRPFTSYKLRLKATNDIGDSDFSSETEAVTTLQDVPGEPPGSVSATPHTTSSVLIQWQPPRDESLNGLLQGYRIYYRELEYEAGSGTEAKTLKNPIALHAELTAQSSFKTVNSSSTSTMCELTHLKKYRRYEVIMTAYNIIGESPASAPVEVFVGEAAPAMAPQNVQVTPLTASQLEVTWDPPPPESQNGNIQGYKIYYWEADSQNETEKMKVLFLPEPVV---RLKNLTSHTKYLVSISAFNAAGDGPKSDPQQGRTHQAAPGAPSFLAFSEITSTTLNVSWGEPAAANGILQGYRVVYEPLAPVQGVSKVVT-VEVRGNWQRWLKVRDLTKGVTYFFRVQA-RTITYGPELQANITAGPAEGSPGSPRDVLVTKSA---SELTLQWTEGHSGDTPTTGY 1935 HSP 3 Score: 126.716 bits (317), Expect = 5.908e-29 Identity = 200/841 (23.78%), Postives = 330/841 (39.24%), Query Frame = 1
Query: 2044 SLDLIW----DAPDDGGSPIISYLLKM-KNYTQTMYYKLADIDAPQTTYTVNNLQAGSKYRFQVAAKNKFGYGEYSAEATVWLETKTTAPSGPPLEFRSVDADTDYIVLRWEPPLPEKRNGQLDGYIFRYRVVTTS----SYVTRKLNSLDTEYKMDGLPLFTKFEVQIAASNEIGIGPYTDSVFIETLQGKPVAPPTDVKVSIVNSTTVLVSFKSPRQALWNGK-LTRIVALYWPPDVPEDQQTYETNYDTSNIHSQQFYLPRLEADKEYVLAVQVKTTGG-PSPGSEKVQFKTTEGRPDSVRDLTVLKTYSDAFSV--TWKPPLKPGGTLQGYKCEYR-IASGKWVEVKEIIKGTEIGVVVKNLEPLTKYEVRVLAYTNAGDG--SWEVRSATTIEKPELP-HAPSSLKAYNVWGTVIALGWTP-----------GYSGRAVILQYQIQYNNDTDYHQNPSRALWREMKNLTKI-------LENPANLTYLQPNAVYRFRMRAYNRLGASGWSNISVDISTGEGVPSSKPRGLIVTAPARQTLEIKWIPPPRDTWNSDSVKYQFLIHPKAQDLKKISRDQYHVLTDNEATSYAASGLQRFTMYNVTMRLFNNKGYGPWSKHIFFRTSEDYPSGYPMNVRADVQSASSVLVKWGPVPEDQRNGFIIGYKVFYE----LKGFPTTEMFEDFPGNTTFSGTITKLNGYTDYEFRVMAYTKVGGLLKSPPVTRKTFEGKPGKPTNVRFIDVNYQYVQLEWDPPLNPNGRLSRYRVNYRQKGSSGDWTQVPVSTFNPRSARVNGMVFNRV-----YEFKIEATNSIGWGEPAIEEVLVTTERSA 4434
SL L W D+ +G + Y +K ++ Q+ D + +T+ L+ +Y Q+ A N G G +S V T+ + PS P + + I+L W + +NG + GY +R S++ R ++ + GL F +E+Q+ A IG G + + +E + PP + V T+V + ++ P + NG L +A P T E +QF L + Y+ + KT G P V RP R+L V + A S+ W P ++ + + R + G+W I VV L P T Y++R+ A + GD S E + TT++ ++P P S+ A + + + W P GY L+Y+ + +NP AL E+ + LT+L+ Y M AYN +G S ++ V++ GE P+ P+ + VT LE+ W PPP ++ N + Y+ + + +A + + + L + L T Y V++ FN G GP S RT + P G P + +++++ V WG NG + GY+V YE ++G E GN + L Y FRV A T G +T EG PG P +V + + + L+W + + + Y + R G W PRSA + +++ YEF++ A N G+GEP+ V+ + A
Sbjct: 1189 SLRLRWVPLPDSQYNGNPESVGYRIKYWRSDLQSSAVAQVVSDRLEREFTIEELEEWMEYELQMQAFNAVGAGPWSE--VVRGRTRESVPSAAPENVSAEAVSSTQILLTWTSVPEQDQNGLILGYKILFRAKDLDPEPRSHIVRGNHTQSA--LLAGLRKFVLYELQVLAFTRIGNGVPSTPLILERTKDDAPGPPVRLVFPEVRLTSVRIVWQPPEEP--NGIILGYQIAYRLASSSPHTFTTVEVGATV-----RQFTATDLAPESAYIFRLSAKTRQGWGEPLEATVITTEKRERPAPPRELLVPQAEVTARSLRLQWVPGSDGASPIRYFTMQVRELPRGEWQTYSSSISHEATACVVDRLRPFTSYKLRLKATNDIGDSDFSSETEAVTTLQ--DVPGEPPGSVSATPHTTSSVLIQWQPPRDESLNGLLQGYRIYYRELEYEAGSGTEAKTLKNPI-ALHAELTAQSSFKTVNSSSTSTMCELTHLKKYRRYEVIMTAYNIIGESP-ASAPVEVFVGEAAPAMAPQNVQVTPLTASQLEVTWDPPPPESQNGNIQGYK-IYYWEADSQNETEKMKVLFLPE---PVVRLKNLTSHTKYLVSISAFNAAGDGPKSDPQQGRTHQAAP-GAPSFLAFSEITSTTLNVSWGE--PAAANGILQGYRVVYEPLAPVQGVSKVVTVE-VRGNWQRWLKVRDLTKGVTYFFRVQARTITYGPELQANITAGPAEGSPGSPRDV-LVTKSASELTLQWTEGHSGDTPTTGYVIEAR-PSDEGLWDMFVKDI--PRSATSYTLSLDKLRQGVTYEFRVVAVNEAGYGEPSNPSTAVSAQVEA 2002 HSP 4 Score: 106.686 bits (265), Expect = 7.396e-23 Identity = 124/561 (22.10%), Postives = 221/561 (39.39%), Query Frame = 1
Query: 1969 ATVLVMESRPFQPSSPRV----NGEPKPNSLDLIWDAPDDGGSPIISYLLKMKNYTQTMYYKL-ADIDAPQTTYTVNNLQAGSKYRFQVAAKNKFGYGEYSAEATVWLETKTTAPSGPPLEFRSVDADTDYIVLRWEPPLPEKRNGQLDGYIFRYR------------------------VVTTSSYVTRKLNSLDTEYKMDGLPLFTKFEVQIAASNEIGIGPYTDSVFIETLQGKPVAPPTDVKVSIVNSTTVLVSFKSPRQALWNGKLTRIVALYWPPDVPEDQQTYETNYDTSNIHSQQFYLPRLEADKEYVLAVQVKTTGGPSPGSEKVQFKTTEGRPDSVRDLTVLKTYSDAFSVTWKPPLKPGGTLQGYKCEYRIAS-----------------GKWVEVKEIIKGTEIGVVVKNLEPLTKYEVRVLAYTNAGDGSWEVRSATTIEKPE-LPHAPSSLKAYNVWGTVIALGWTPGYSGRAVILQYQIQYNNDTDYHQNPSRALWRE-MKNLTKILEN-PANLTYLQPNAVYRFRMRAYNRLGASGWSNISVDIS 3504
ATV+ E R +P+ PR E SL L W DG SPI + ++++ + + + I T V+ L+ + Y+ ++ A N G ++S+E T + T P PP + T ++++W+PP E NG L GY YR + SS+ T +S T ++ L + ++EV + A N IG P + V + + P P +V+V+ + ++ + V++ P NG + YW D + + + + + L L + +Y++++ G P S+ Q +T + P + L + S +V+W P G LQGY+ Y + +W++V+++ KG + + R + Y E+++ T E P +P + + + L WT G+SG Y I+ + LW +K++ + + +L L+ Y FR+ A N G SN S +S
Sbjct: 1466 ATVITTEKRE-RPAPPRELLVPQAEVTARSLRLQWVPGSDGASPIRYFTMQVRELPRGEWQTYSSSISHEATACVVDRLRPFTSYKLRLKATNDIGDSDFSSE-TEAVTTLQDVPGEPPGSVSATPHTTSSVLIQWQPPRDESLNGLLQGYRIYYRELEYEAGSGTEAKTLKNPIALHAELTAQSSFKTVNSSSTSTMCELTHLKKYRRYEVIMTAYNIIGESPASAPVEVFVGEAAPAMAPQNVQVTPLTASQLEVTWDPPPPESQNGNIQGYKIYYWEADSQNETEKMKVLFLPEPV----VRLKNLTSHTKYLVSISAFNAAGDGPKSDPQQGRTHQAAPGAPSFLAFSEITSTTLNVSWGEPAAANGILQGYRVVYEPLAPVQGVSKVVTVEVRGNWQRWLKVRDLTKGVTY---------FFRVQARTITYGP------ELQANITAGPAEGSPGSPRDVLVTKS-ASELTLQWTEGHSGDTPTTGYVIEARPSDE-------GLWDMFVKDIPRSATSYTLSLDKLRQGVTYEFRVVAVNEAGYGEPSNPSTAVS 1997 The following BLAST results are available for this feature:
BLAST of TCONS_00062614 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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