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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062607 ID=TCONS_00062607|Name=TCONS_00062607|organism=Clytia hemisphaerica|type=transcript|length=1415bp GGGTAATGTGGTTCTTCGAAAAATTATCaacagataaaaaatgttttggg tGTCTCATTAAAAAgagttttcaaagattttgtatGTAATCTTTTTGTTC CTCTTCAGTTACAGGGACTATTTGACTAAACTATCAAGGAGACTTGACAT GACGAATTAACAGCTCAAAAAGACAGTGACACAAACAAAGAcaatgacaa aaacaaaaacaaagacaataacaaaaagcaaaaacaaacacAACAGACAA TGACGCCTCTGTAATTTAGCTTATGGAATTTTCgtggaaatttgattttt gagggTTTGAGTATCGTCCGCGAATTAGGTCTTAAAGGAAATCTGGGAAG ACTGTTTTCCGCGAAGTAGAAAAATAAATCAGCAATGTCAACACCTGCAG ATTGGAAGCACTCCTATTACCTCAAACTTAAAGATTTCTACAAAGAGTCT GCTTTAGTTCTAATGAGCGAAAAAGTATGTGACGCTGCAATGCACCAACG TAAAGCTAAAAGACTCGAGCGAAGCTTAACATCGTTTGAAAAGGTTCATA AAATAGCTAAAAGATGGAAAACCACAGAGAGCCAATTTCGCAATCAACAT CTGTCTTTTTTGCAAGAAAAGTCGAACGAAACAGCATCCACACTGTACAG CAGGTGCTCCGAAAGACTAATGTTGCTAACTCTAAAGAAACGATATGCAG ATGGTTCAGCTATAGCAACGAGGTTGAGCAAACAAATCAATAAAGTGTGc aaagaaataaagaatttaTTGGCTTCATACAATTCCATGCGATCAGAGAT TTCGCCTAAATTCAAACCTGTTGATTATAAAGAGGCTCTAGATGTCAAGT CTTCAATATATAACGAAATAAATCTTGTATCCAACTTGGATGAGGCAAGA AGTTCACAAGTCCCTATCAACGTAGTGAAGTCACTCGTACAATTCTACCT CAGAAAACAAAGAGCACAAGAAGAAATAATTATCGTCGAGGAAGAAATGA GATCGACATTGCACTTTTGGGAAAATCAATTGACTTTTCTTGATGAATGT GCTTCACACCAAACTTCTGTTGGGATTAGATACCTCTTAAGAGAAAGAAT CTTGATTGTGAAGAACTTCCTTGGGgatttaaaaaaactctttGAGTTTG CTACCGAGCCAGTAGAACGAGTAGAAATTAATCACACGAATAATCATATC TCCTTGAATGGCTCCGAAAATGAAGAGTACCTATTCAGTGATCAAGATTT TTCGAGCGATGAAGAAGCCATATCATCTGGTGACAGTGACAGCGACACTG GTGACTCTGTTTTAAGTGATGACTTGTACATATAAATTATTTTGCCAATG ATGTTTGCTATTTTTTACTGTTGTATATAACTATCGTTAcaaagaaaagc attttttacCTGCGT Run BLAST on NCBI protein sequence of TCONS_00062607-protein >TCONS_00062607-protein ID=TCONS_00062607-protein|Name=TCONS_00062607-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
MSTPADWKHSYYLKLKDFYKESALVLMSEKVCDAAMHQRKAKRLERSLTS FEKVHKIAKRWKTTESQFRNQHLSFLQEKSNETASTLYSRCSERLMLLTL KKRYADGSAIATRLSKQINKVCKEIKNLLASYNSMRSEISPKFKPVDYKE ALDVKSSIYNEINLVSNLDEARSSQVPINVVKSLVQFYLRKQRAQEEIII VEEEMRSTLHFWENQLTFLDECASHQTSVGIRYLLRERILIVKNFLGDLK KLFEFATEPVERVEINHTNNHISLNGSENEEYLFSDQDFSSDEEAISSGD SDSDTGDSVLSDDLYI Run BLAST on NCBI transcript from alignment at scaffold_37:52658..55459- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062607 ID=TCONS_00062607|Name=TCONS_00062607|organism=Clytia hemisphaerica|type=transcript|length=2802bp|location=Sequence derived from alignment at scaffold_37:52658..55459- (Clytia hemisphaerica) GGGTAATGTGGTTCTTCGAAAAATTATCAACAGATAAAAAATGTTTTGGG
TGTCTCATTAAAAAGAGTTTTCAAAGATTTTGTATGTAATCTTTTTGTTC
CTCTTCAGTTACAGGGACTATTTGACTAAACTATCAAGGAGACTTGACAT
GACGAATTAACAGCTCAAAAAGACAGTGACACAAACAAAGACAATGACAA
AAACAAAAACAAAGACAATAACAAAAAGCAAAAACAAACACAACAGACAA
TGACGCCTCTGTAATTTAGCTTATGGAATTTTCGTGGAAATTTGATTTTT
GAGGGTTTGAGTATCGTCCGCGAATTAGGTCTTAAAGGAAATCTGGGAAG
ACTGTTTTCCGCGAAGTAGAAAAATAAATCAGCAATGTCAAGTAACTATC
AAAATCTTTACTAGCATCCAATCCGTAATTTAATGACTAAAATTCGAAAT
CCGCGAAAGTCCTTGTGAAAGTTTATCCCATTTAAAAGGTTGACTTAGTT
TTATTAGTTCTGTTAGTTTCTGAAAAAACATGTCGGACCTGGTTAATGAA
AAAGGATGCACTGCACTGTGTTTCCATCATTCTTACTTAAACGGAAACAT
GAAAACTACTCTTCAATTCTTATTCATTCAATTTCCGTTTTCTTCAGCAC
CTGCAGATTGGAAGCACTCCTATTACCTCAAACTTAAAGATTTCTACAAA
GAGTCTGCTTTAGTTCTAATGAGCGAAAAAGTATGTGACGCTGCAATGCA
CCAACGTAAAGCTAAAAGGTAAATGGTTAAGACAAATCATAATAAAATGT
ATTCTTTCATTTTATTTATCATTGAAAATTTTTTTAATCCTTCAAAATCT
TTCACATACTGTGGAACTGTATATTATAGAAGCAAATTATGTCTTCTTTC
TGACCCTGATGCTTTTAAAGAAAGTTTTTGATCTCTAACGTAAAATGTTG
CACTTCTACTTTTCAGACTCGAGCGAAGCTTAACATCGTTTGAAAAGGTT
CATAAAATAGCTAAAAGATGGAAAACCACAGAGAGCCAATTTCGCAATCA
ACATCTGTCTTTTTTGCAAGAAAAGTCGAACGAAACAGCATCCACACTGT
ACAGCAGGTGCTCCGAAAGACTAATGTTGCTAACTCTAAAGAAACGATAT
GCAGGTAAGTGTTTTTAGTGACACCTATTAACATTCTATTCAAAAATCTC
GAGTTACCATAGAAAATTACAAATTAGGCGCGTTGATACTTTAAACGTTG
TAGTGTATGAGGAACTTTCAATTCAAATGATAAAGTGAAGTGTGATGTGT
CGATTTGGTTGTAATGAAGTGCAATAAAAATCCGTTTTTCTACTTTTAGA
TGGTTCAGCTATAGCAACGAGGTTGAGCAAACAAATCAATAAAGTGTGCA
AAGAAATAAAGAATTTATTGGCTTCATACAATTCCATGCGATCAGAGATT
TCGCCTAAATTCAAACCTGTTGATTATAAAGAGGCTCTAGATGTCAAGTC
TTCAATATATAACGAAATAAATCTTGTATCCAACTTGGATGAGGTAAGTG
TAAAAGTGTGTAAAAAAGGTCATAAGTAGAGGAGCAAAAAGAGAAATCTA
TTAGTTTGAGCTAAGCCCGGGGGGGCACTTAAGGTAAATGACTTACCAGA
CGTTCGGCCCTTAAGGGTCGGTTTTTCATAGTTCAGTTAGTGCACTGTAA
GGGTAGGAAATTACAAAACTTCACTGAACTGCACTGTAAGGGTAGGAAAT
TGTAATAAAAGGCCAATTTTTTGGTAAAATTGGCAAAAAAATTGGGCAAT
TATGGAGTAAAATTGGTCAATTTTGGAGGAAAATTTCCACATTTTCTTGG
AAATTGCAAAAATTTCGCCCTTACGGGCAAGAAACTTTGAAAAAGTGCAC
TGTAAGGGTACGATTTTTCATGGAAATTCACTGCACTGTAAGGGTCCGAT
TTTGGAAGCCAAATTTTGGGCCGAACGTATGGTCGTTTTCAGATCGAGTG
CCCCCCCCCCCGGGGAGCTAAGAGATTGGGTGAAACTTTCGAAGTATTTC
GAGGGTCAATCGGTGCAAGTTTAGTGTGTGTAAAGAACCATCCATTGATG
GTACTAAGTCTTTAAGTTCCAACCGGGTCTTCCTATAAACTTTCGACCAC
ATTTCGATATTGTCAAATTTTCTTCAAGGACGTTTTATGGATGAAGTCTA
CTATCGCAAAAAAGTGTCCTTCATAATGGTTTGGTCTCAAATTTGAATCC
TTACAGTTTCTTCTCTCCTCTTTCATTTTAGGCAAGAAGTTCACAAGTCC
CTATCAACGTAGTGAAGTCACTCGTACAATTCTACCTCAGAAAACAAAGA
GCACAAGAAGAAATAATTATCGTCGAGGAAGAAATGAGATCGACATTGCA
CTTTTGGGAAAATCAATTGACTTTTCTTGATGAATGTGCTTCACACCAAA
CTTCTGTTGGGATTAGATACCTCTTAAGAGAAAGAATCTTGATTGTGAAG
AACTTCCTTGGGGATTTAAAAAAACTCTTTGAGTTTGCTACCGAGCCAGT
AGAACGAGTAGAAATTAATCACACGAATAATCATATCTCCTTGAATGGCT
CCGAAAATGAAGAGTACCTATTCAGTGATCAAGATTTTTCGAGCGATGAA
GAAGCCATATCATCTGGTGACAGTGACAGCGACACTGGTGACTCTGTTTT
AAGTGATGACTTGTACATATAAATTATTTTGCCAATGATGTTTGCTATTT
TTTACTGTTGTATATAACTATCGTTACAAAGAAAAGCATTTTTTACCTGC
GT Coding sequence (CDS) from alignment at scaffold_37:52658..55459- >TCONS_00062607 ID=TCONS_00062607|Name=TCONS_00062607|organism=Clytia hemisphaerica|type=CDS|length=4755bp|location=Sequence derived from alignment at scaffold_37:52658..55459- (Clytia hemisphaerica) GCAAGAAGTTCACAAGTCCCTATCAACGTAGTGAAGTCACTCGTACAATT CTACCTCAGAAAACAAAGAGCACAAGAAGAAATAATTATCGTCGAGGAAG AAATGAGATCGACATTGCACTTTTGGGAAAATCAATTGACTTTTCTTGAT GAATGTGCTTCACACCAAACTTCTGTTGGGATTAGATACCTCTTAAGAGA AAGAATCTTGATTGTGAAGAACTTCCTTGGGGATTTAAAAAAACTCTTTG AGTTTGCTACCGAGCCAGTAGAACGAGTAGAAATTAATCACACGAATAAT CATATCTCCTTGAATGGCTCCGAAAATGAAGAGTACCTATTCAGTGATCA AGATTTTTCGAGCGATGAAGAAGCCATATCATCTGGTGACAGTGACAGCG ACACTGGTGACTCTGTTTTAAGTGATGACTTGTACATATAAATGGTTCAG CTATAGCAACGAGGTTGAGCAAACAAATCAATAAAGTGTGCAAAGAAATA AAGAATTTATTGGCTTCATACAATTCCATGCGATCAGAGATTTCGCCTAA ATTCAAACCTGTTGATTATAAAGAGGCTCTAGATGTCAAGTCTTCAATAT ATAACGAAATAAATCTTGTATCCAACTTGGATGAGACTCGAGCGAAGCTT AACATCGTTTGAAAAGGTTCATAAAATAGCTAAAAGATGGAAAACCACAG AGAGCCAATTTCGCAATCAACATCTGTCTTTTTTGCAAGAAAAGTCGAAC GAAACAGCATCCACACTGTACAGCAGGTGCTCCGAAAGACTAATGTTGCT AACTCTAAAGAAACGATATGCAGCACCTGCAGATTGGAAGCACTCCTATT ACCTCAAACTTAAAGATTTCTACAAAGAGTCTGCTTTAGTTCTAATGAGC GAAAAAGTATGTGACGCTGCAATGCACCAACGTAAAGCTAAAAGATGTCA AGCAAGAAGTTCACAAGTCCCTATCAACGTAGTGAAGTCACTCGTACAAT TCTACCTCAGAAAACAAAGAGCACAAGAAGAAATAATTATCGTCGAGGAA GAAATGAGATCGACATTGCACTTTTGGGAAAATCAATTGACTTTTCTTGA TGAATGTGCTTCACACCAAACTTCTGTTGGGATTAGATACCTCTTAAGAG AAAGAATCTTGATTGTGAAGAACTTCCTTGGGGATTTAAAAAAACTCTTT GAGTTTGCTACCGAGCCAGTAGAACGAGTAGAAATTAATCACACGAATAA TCATATCTCCTTGAATGGCTCCGAAAATGAAGAGTACCTATTCAGTGATC AAGATTTTTCGAGCGATGAAGAAGCCATATCATCTGGTGACAGTGACAGC GACACTGGTGACTCTGTTTTAAGTGATGACTTGTACATATAAATGGTTCA GCTATAGCAACGAGGTTGAGCAAACAAATCAATAAAGTGTGCAAAGAAAT AAAGAATTTATTGGCTTCATACAATTCCATGCGATCAGAGATTTCGCCTA AATTCAAACCTGTTGATTATAAAGAGGCTCTAGATGTCAAGTCTTCAATA TATAACGAAATAAATCTTGTATCCAACTTGGATGAGACTCGAGCGAAGCT TAACATCGTTTGAAAAGGTTCATAAAATAGCTAAAAGATGGAAAACCACA GAGAGCCAATTTCGCAATCAACATCTGTCTTTTTTGCAAGAAAAGTCGAA CGAAACAGCATCCACACTGTACAGCAGGTGCTCCGAAAGACTAATGTTGC TAACTCTAAAGAAACGATATGCAGCACCTGCAGATTGGAAGCACTCCTAT TACCTCAAACTTAAAGATTTCTACAAAGAGTCTGCTTTAGTTCTAATGAG CGAAAAAGTATGTGACGCTGCAATGCACCAACGTAAAGCTAAAAGATGTC AAGCAAGAAGTTCACAAGTCCCTATCAACGTAGTGAAGTCACTCGTACAA TTCTACCTCAGAAAACAAAGAGCACAAGAAGAAATAATTATCGTCGAGGA AGAAATGAGATCGACATTGCACTTTTGGGAAAATCAATTGACTTTTCTTG ATGAATGTGCTTCACACCAAACTTCTGTTGGGATTAGATACCTCTTAAGA GAAAGAATCTTGATTGTGAAGAACTTCCTTGGGGATTTAAAAAAACTCTT TGAGTTTGCTACCGAGCCAGTAGAACGAGTAGAAATTAATCACACGAATA ATCATATCTCCTTGAATGGCTCCGAAAATGAAGAGTACCTATTCAGTGAT CAAGATTTTTCGAGCGATGAAGAAGCCATATCATCTGGTGACAGTGACAG CGACACTGGTGACTCTGTTTTAAGTGATGACTTGTACATATAAATGGTTC AGCTATAGCAACGAGGTTGAGCAAACAAATCAATAAAGTGTGCAAAGAAA TAAAGAATTTATTGGCTTCATACAATTCCATGCGATCAGAGATTTCGCCT AAATTCAAACCTGTTGATTATAAAGAGGCTCTAGATGTCAAGTCTTCAAT ATATAACGAAATAAATCTTGTATCCAACTTGGATGAGACTCGAGCGAAGC TTAACATCGTTTGAAAAGGTTCATAAAATAGCTAAAAGATGGAAAACCAC AGAGAGCCAATTTCGCAATCAACATCTGTCTTTTTTGCAAGAAAAGTCGA ACGAAACAGCATCCACACTGTACAGCAGGTGCTCCGAAAGACTAATGTTG CTAACTCTAAAGAAACGATATGCAGCACCTGCAGATTGGAAGCACTCCTA TTACCTCAAACTTAAAGATTTCTACAAAGAGTCTGCTTTAGTTCTAATGA GCGAAAAAGTATGTGACGCTGCAATGCACCAACGTAAAGCTAAAAGATGT CAAGCAAGAAGTTCACAAGTCCCTATCAACGTAGTGAAGTCACTCGTACA ATTCTACCTCAGAAAACAAAGAGCACAAGAAGAAATAATTATCGTCGAGG AAGAAATGAGATCGACATTGCACTTTTGGGAAAATCAATTGACTTTTCTT GATGAATGTGCTTCACACCAAACTTCTGTTGGGATTAGATACCTCTTAAG AGAAAGAATCTTGATTGTGAAGAACTTCCTTGGGGATTTAAAAAAACTCT TTGAGTTTGCTACCGAGCCAGTAGAACGAGTAGAAATTAATCACACGAAT AATCATATCTCCTTGAATGGCTCCGAAAATGAAGAGTACCTATTCAGTGA TCAAGATTTTTCGAGCGATGAAGAAGCCATATCATCTGGTGACAGTGACA GCGACACTGGTGACTCTGTTTTAAGTGATGACTTGTACATATAAATGGTT CAGCTATAGCAACGAGGTTGAGCAAACAAATCAATAAAGTGTGCAAAGAA ATAAAGAATTTATTGGCTTCATACAATTCCATGCGATCAGAGATTTCGCC TAAATTCAAACCTGTTGATTATAAAGAGGCTCTAGATGTCAAGTCTTCAA TATATAACGAAATAAATCTTGTATCCAACTTGGATGAGACTCGAGCGAAG CTTAACATCGTTTGAAAAGGTTCATAAAATAGCTAAAAGATGGAAAACCA CAGAGAGCCAATTTCGCAATCAACATCTGTCTTTTTTGCAAGAAAAGTCG AACGAAACAGCATCCACACTGTACAGCAGGTGCTCCGAAAGACTAATGTT GCTAACTCTAAAGAAACGATATGCAGCACCTGCAGATTGGAAGCACTCCT ATTACCTCAAACTTAAAGATTTCTACAAAGAGTCTGCTTTAGTTCTAATG AGCGAAAAAGTATGTGACGCTGCAATGCACCAACGTAAAGCTAAAAGATG TCAAGCAAGAAGTTCACAAGTCCCTATCAACGTAGTGAAGTCACTCGTAC AATTCTACCTCAGAAAACAAAGAGCACAAGAAGAAATAATTATCGTCGAG GAAGAAATGAGATCGACATTGCACTTTTGGGAAAATCAATTGACTTTTCT TGATGAATGTGCTTCACACCAAACTTCTGTTGGGATTAGATACCTCTTAA GAGAAAGAATCTTGATTGTGAAGAACTTCCTTGGGGATTTAAAAAAACTC TTTGAGTTTGCTACCGAGCCAGTAGAACGAGTAGAAATTAATCACACGAA TAATCATATCTCCTTGAATGGCTCCGAAAATGAAGAGTACCTATTCAGTG ATCAAGATTTTTCGAGCGATGAAGAAGCCATATCATCTGGTGACAGTGAC AGCGACACTGGTGACTCTGTTTTAAGTGATGACTTGTACATATAAATGGT TCAGCTATAGCAACGAGGTTGAGCAAACAAATCAATAAAGTGTGCAAAGA AATAAAGAATTTATTGGCTTCATACAATTCCATGCGATCAGAGATTTCGC CTAAATTCAAACCTGTTGATTATAAAGAGGCTCTAGATGTCAAGTCTTCA ATATATAACGAAATAAATCTTGTATCCAACTTGGATGAGACTCGAGCGAA GCTTAACATCGTTTGAAAAGGTTCATAAAATAGCTAAAAGATGGAAAACC ACAGAGAGCCAATTTCGCAATCAACATCTGTCTTTTTTGCAAGAAAAGTC GAACGAAACAGCATCCACACTGTACAGCAGGTGCTCCGAAAGACTAATGT TGCTAACTCTAAAGAAACGATATGCAGCACCTGCAGATTGGAAGCACTCC TATTACCTCAAACTTAAAGATTTCTACAAAGAGTCTGCTTTAGTTCTAAT GAGCGAAAAAGTATGTGACGCTGCAATGCACCAACGTAAAGCTAAAAGAT GTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00062607-exon-scaffold_37-1575043694:55069..55459 | TCONS_00062607-exon-scaffold_37-1575043694:55069..55459 | Clytia hemisphaerica | exon |
TCONS_00062607-exon-scaffold_37-1575043694:54692..54812 | TCONS_00062607-exon-scaffold_37-1575043694:54692..54812 | Clytia hemisphaerica | exon |
TCONS_00062607-exon-scaffold_37-1575043694:54306..54493 | TCONS_00062607-exon-scaffold_37-1575043694:54306..54493 | Clytia hemisphaerica | exon |
TCONS_00062607-exon-scaffold_37-1575043694:53917..54110 | TCONS_00062607-exon-scaffold_37-1575043694:53917..54110 | Clytia hemisphaerica | exon |
TCONS_00062607-exon-scaffold_37-1575043694:52658..53178 | TCONS_00062607-exon-scaffold_37-1575043694:52658..53178 | Clytia hemisphaerica | exon |
TCONS_00062607-exon-scaffold_37-1510915933:55069..55459 | TCONS_00062607-exon-scaffold_37-1510915933:55069..55459 | Clytia hemisphaerica | exon |
TCONS_00062607-exon-scaffold_37-1510915933:54692..54812 | TCONS_00062607-exon-scaffold_37-1510915933:54692..54812 | Clytia hemisphaerica | exon |
TCONS_00062607-exon-scaffold_37-1510915933:54306..54493 | TCONS_00062607-exon-scaffold_37-1510915933:54306..54493 | Clytia hemisphaerica | exon |
TCONS_00062607-exon-scaffold_37-1510915933:53917..54110 | TCONS_00062607-exon-scaffold_37-1510915933:53917..54110 | Clytia hemisphaerica | exon |
TCONS_00062607-exon-scaffold_37-1510915933:52658..53178 | TCONS_00062607-exon-scaffold_37-1510915933:52658..53178 | Clytia hemisphaerica | exon |
TCONS_00062607-exon-scaffold_37-1491911889:55069..55459 | TCONS_00062607-exon-scaffold_37-1491911889:55069..55459 | Clytia hemisphaerica | exon |
TCONS_00062607-exon-scaffold_37-1491911889:54692..54812 | TCONS_00062607-exon-scaffold_37-1491911889:54692..54812 | Clytia hemisphaerica | exon |
TCONS_00062607-exon-scaffold_37-1491911889:54306..54493 | TCONS_00062607-exon-scaffold_37-1491911889:54306..54493 | Clytia hemisphaerica | exon |
TCONS_00062607-exon-scaffold_37-1491911889:53917..54110 | TCONS_00062607-exon-scaffold_37-1491911889:53917..54110 | Clytia hemisphaerica | exon |
TCONS_00062607-exon-scaffold_37-1491911889:52658..53178 | TCONS_00062607-exon-scaffold_37-1491911889:52658..53178 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_37 | supercontig | scaffold_37:52658..55459 - |
Blast
The following BLAST results are available for this feature:
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