TCONS_00062572 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062572
Unique NameTCONS_00062572
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2515

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062572 ID=TCONS_00062572|Name=TCONS_00062572|organism=Clytia hemisphaerica|type=transcript|length=2515bp
ctaccatcatcatcatctaccTTAAACGTATCATCCAATATGGCTCCGGT
GTTGTTACTTCGCCTGACAGTGTTCTTGTTAACATACCCAGTGCTGGCTA
TCTCAATCAACAAAAACTGCACAACATGGTTTACCGGGGAAAATGTTTTA
TCCAGTAATTTGAACACAATACCTCTGGGTTGGTACATACCACCTTTCAC
CCTCAAATCAGCAGATGTTTTCGAGGAAATGATACATATTTTGAACACGA
AGCAGTTTAAAGAAGGTGGACAGCACCATGACTGCATGGACTATCTGACA
AATGACGTGACAACAAAAACATCTTCATTCCTTCAAAACCTTCTTAAACA
AACACACTCTTCCAAGATGGCGCTTATCACCAATAACAATAAAGCTTATC
ACAGCACAACAGCAAACATCATCGATAAGTTGACCAATATTGAAGTATCA
GAATTCAGTGTCGGTACACTTAATGACACCATCTTGAATAATTTCTTCAA
CACTATTTTACAATTGCAAGCTCACACTGTCTTATTACTGATCGAAGAAG
CCGACTGGGAAATAGTGAAGAAATTTCTTTCagaaagtgtgaacaatgat
gTCTTTTAGATTCGTCTCTCCTTTTCGAAGAATGATACTGAAGCACACAA
CGATGGAGTGACTTGTTCGTATGAACTCTCCATCACAGATCTTCTTGTCG
GAAGCAATATCAGTTATACTGAGCAACAAGAGAACGAACAGAAAATAATC
GATGCCATGAAACACAAGAAAACACGATGTTCCAAGAAGTACAAATCGAT
CATTCGAGCCGTCAGTATCATTGATTCACCTTACCTCGTTGAAACTCCTC
ATGAAGTGTCAGAGTTTGGAAATACTGTGTGCAAAGAAGGTTCATTTCCA
TGTCGTAAAGCTACTGACGATGTTGGTAATTCCTGGGTGATTCGTTGCTG
CGCAGGGTATGTGATTGATGTAGCTGAAATGATGTTTGATTATTTGGGGT
ATGATTGGACTTTGTATTTGGTACCTGATGGATTCACTAATTATAATGAT
GTTACAGACTGTGTTTGGAATGGATTGGTGGACGAATTGATATCCGACCG
CGCGGACGTGGCACTCGCTCCGTTAACGGCAACCTCTCATCGCATAAGAG
TGATCGATTTCACTGAACATATTATCACCACAAACATTGCTGTTGTCTCA
CGTAACAAACCTGAAGAACTAGAATTCATTAACTGGGAATTCCTCAAGAG
TCTCGATTGGACTTTACTACTCGCCTTATTGATCACACTACTGATTGTCT
GCTCAGCTTTATTCACGGTTGAATGGCTTAtgagaaaaatgatgagaaac
tTCAAAAAGACTGGTCGATACCCGACTAGAGAAGCATTTTCATATGGCGC
AGGGTTAACCTTCCAACGTGATTTAGCAGGTAAAACACCCAATCGGTGGG
CCACAAGAATTATCGCCATTTCTTATGCGGTTGCCTTGACGATCATCATG
TCAACATACACGGCTAATCTGACGGCAACGAATATCGCTGATGCAACCAA
CGACTTCAAAGGGCTGAAAGATGAAAAGGTGCACTTTGATCCCTTGATAC
ATACTTGACAAATCGGTGTTTTCTAGAATTAAATATCGAGAAATTTGCGA
AATATCACGTGGTTCGAACCGACGATGAAGGAGTCGCCAACGTCTTCACA
GGTCAACTTGGTGCATACATCTCGGACTACCATTCATTGGCATCGAAAAT
CAGTCAACAGCTCGATTATTGTGAAAACCTTCAAATGAAAGtggaaaaat
ttgttttcttcaatagttttggaacacagAAAAATTCCAAATTAACCAAC
ATTTTCTCATCAGCTTTACGTGAACTCAAAGCTACAAATGATCTGGATGT
TTCCTTAAAGCGCTGGTTCAATACATGCGAAGGACCCGATATGAAAGTCT
ATCCTTTCACTTTCCAATACGCCGGAGGGATGGTCCTTCTAGTTACTCTT
TTTCTAGCTTTGGCGATTCTTGTATTACTAGTGGAAAGTTTATACTCATA
CATGACAGTATCTAagaaatcaacattttcaatcAATGATGTCGActgaa
agaaaacaaagagGAGAAGAAGATAACCACCCTTTGGACCGTTAAGACCA
TCAACCATGGAAGAATGAACattatgcaggctcagtttttgataCCTAAA
CAATGGTTCTATTctcagaatttttttctttcaaatttgtttaagaagaa
tagaatgctaagcataaatgcgagcctgatataggggtagacacttgctt
ataaaagaaaacatgtAATTCAAACCATGGAAGAATGAGACCCTCTTAAA
CTTTACAAACTGTACAGaatcaaaatctattttttttacatttgtaATAC
TAAACGTAATGTATTTATGATTTCCGAAAAACTTAGGTCGTTGACTCATT
TTGATACTATactgctcttataaaaaaagtgttaaTCTAATATCTCAGCT
CTACTGACTTGTTAT
Run BLAST on NCBI

protein sequence of TCONS_00062572-protein

>TCONS_00062572-protein ID=TCONS_00062572-protein|Name=TCONS_00062572-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MKHKKTRCSKKYKSIIRAVSIIDSPYLVETPHEVSEFGNTVCKEGSFPCR
KATDDVGNSWVIRCCAGYVIDVAEMMFDYLGYDWTLYLVPDGFTNYNDVT
DCVWNGLVDELISDRADVALAPLTATSHRIRVIDFTEHIITTNIAVVSRN
KPEELEFINWEFLKSLDWTLLLALLITLLIVCSALFTVEWLMRKMMRNFK
KTGRYPTREAFSYGAGLTFQRDLAGKTPNRWATRIIAISYAVALTIIMST
YTANLTATNIADATNDFKGLKDEKVHFDPLIHT
Run BLAST on NCBI

transcript from alignment at scaffold_369:140654..145870-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062572 ID=TCONS_00062572|Name=TCONS_00062572|organism=Clytia hemisphaerica|type=transcript|length=5217bp|location=Sequence derived from alignment at scaffold_369:140654..145870- (Clytia hemisphaerica)
CTACCATCATCATCATCTACCTTAAACGTATCATCCAATATGGCTCCGGT
GTTGTTACTTCGCCTGACAGTGTTCTTGTTAACATACCCAGTGCTGGCTA
TCTCAATCAACAAAAACTGCACAACATGGTTTACCGGGGAAAATGTTTTA
TCCAGTAATTTGAACACAATACCTCTGGGTTGGTACATACCACCTTTCAC
CCTCAAATCAGCAGATGTTTTCGAGGAAATGATACATATTTTGAACACGA
AGCAGTTTAAAGAAGGTGGACAGGTAGGAAAATATCTACATATTTTGAGA
CATGTTGAAAGAAACATGTTTGTTGTTTGAATATAATGATTTGGGTTTTG
CTACTGCGCAGAGCAAAAAGGTGTGGTATTGACCCTTAAAAAAATTATAT
TCCTTCTCCTTGACAGCAATATAGAATGTTATCATTTTCTAACGGATGAC
TATTTTATCCCTGCTTTACTAATTTTTTGGACCTACCTCCGGATACCCCG
GTGGAGGTCCTTTAAATTAACCAATGTTCGTCCGTCCGTTCGTTCGTCTG
TTACCAGCTTTTCTCGGGATTGGCTCATTACTTTTTTCTGTTTTTTGGCA
CAATGATGCAAAATGATGATTTCTAAAGAGTAACGGAGCCCGATTTTCGA
AATATGCCGGAAAATTTGGTATTTTTTCGAGATTTTATCATTAGTTCTTT
CTGATTTTTTGCTCAAAGATGCGTATTAACAATGCCCAAAACATTGCCGA
GTGTGATTTTTGAGAAAATCTTTTTCCGGCCGAAAATGCCGGAAATATAA
CGGAAATCGCCGTTTTTCTGGATTTTCATTGGACCTTTTCCTTATAATAT
TAATAGCAATGCCCACCATCGAAGCATGTTTCAATTTTCAATAAAATTGA
TTTTTGAAGCCGGAACTATTCAAAAATCGCTGGAACAACCTATTTTCGCC
GGAAAGACTTGAATATTTTCGACTTGAATTTCTCGAGCTGTACTTTGTAT
TTTTTTATGAAATTTTGCACACTGATGCAAAATGACAATACCTAAAATGT
GACGGAGCCCGATATGTTTTTCACACAAAAACATTATTGATAACAATGCT
CACCATCAAGCATGATTCAATGGTCAATAAAACTGATTTTTGCAACCAGA
ACTTTCTATTTATTTTTTCCTACAGCCCTTCCCTCTCCCCCCATCAACAA
TCAATGATGAATTTATTGCGTTATGCATTTTCACTAAACGCTATATTTTC
TTTTTCATTTTTCTCCTCGCATTGCTATCTAACTTTCATCATCAGGTAGG
TCCATTCAGCATCTAGCTTGTTCAACCTGACTTTTAGAAAGTTCTGGCTA
TGACAAAACTACACCCAGTATTTATTTTCAACTTTATTCTTTCCAAAGCA
CCATGACTGCATGGACTATCTGACAAATGACGTGACAACAAAAACATCTT
CATTCCTTCAAAACCTTCTTAAACAAACACACTCTTCCAAGATGGCGCTT
ATCACCAATAACAATAAAGCTTATCACAGCACAACAGCAAACATCATCGA
TAAGTTGACCAATATTGAAGTATCAGAATTCAGTGTCGGTACACTTAATG
ACACCATCTTGAATAATTTCTTCAACACTATTTTACAATTGCAAGCTCAC
ACTGTCTTATTACTGATCGAAGAAGCCGACTGGGAAATAGTGAAGAAATT
TCTTTCAGAAAGTGTGAACAATGATGTCTTTTAGATTCGTCTCTCCTTTT
CGAAGAATGATACTGAAGCACACAACGATGGAGTGACTTGTTCGTATGAA
CTCTCCATCACAGATCTTCTTGTCGGAAGCAATATCAGGTATACATGTTT
TGTTCTTTGTACTTATTTGTGATAGGTTAACATAAATACAAAGGCTTTTC
CATTGAAGACTTAATTACAGTAATCACTCGAGGGAAAATCAATTGAGGTC
AAATCCCTCTAGTACTAACTAACTATCATTGTATATTCAAATCTTTCTGT
GATTCGAGGTAAAATATCGGCCTCTTAGCTCGAAAAAACTCGTTGGCTAA
TTTGGAGAGATTTCTTGGTCCCACCTACAATCAAAATTATAATATTAGGG
GGATTCCCTTCAAAATTGTGGACACAACAACTCATTTTTAAGTGCTTTAA
CTAAAGCCAAACGACCTTCCGATCTCAGGATAAAAAAGCTTAAAAAGTTC
CATTAAGGCTGAGTATCAAGTCTGGAAACCATACTAAAACCCTCCAAAAT
AAAGTGAAAGTACTGAAATAGGAACAACTGCAATTTCTTCTTCAGTTATA
CTGAGCAACAAGAGAACGAACAGAAAATAATCGATGCCATGAAACACAAG
AAAACACGATGTTCCAAGAAGTACAAATCGATCATTCGAGCCGTCAGTAT
CATTGATTCACCTTACCTCGTTGAAACTCCTCATGAAGTGTCAGAGTTTG
GAAATACTGTGTGCAAAGAAGGTTCATTTCCATGTCGTAAAGCTACTGAC
GATGTTGGTAATTCCTGGGTGATTCGTTGCTGCGCAGGTTAGTAGTGTTG
TTCGCCTCACACATTTATTATGTAGTTTTTTGTTTAAGGTTCAAATGTAT
CGCCCAGTCAACTCTTTACTCTAAGATACCGAATAAAGGGGAAGGTACCT
CCAAAATTATAAGCTAAAACCAGCAGTGAATAAACGGGGAGGGAGGTAAG
ATAACCAGCCAGTCTAGTAAAATTTTAATTCATCTCTTTCTACTTTACTT
TCCAGGGTATGTGATTGATGTAGCTGAAATGATGTTTGATTATTTGGGGT
ATGATTGGACTTTGTATTTGGTACCTGATGGATTCACTAATTATAATGAT
GTTACAGGTAATTTTACGCTCTATGTCGAAGCGGAGGTCTGAAAGGGAAC
AAGGATTACCATCTTCACCAATACTTCGCCGATGTGCATCGCTTCGTATT
GTTACAAAAAAACTTTGACTGAGCTTTTGCGAAACGACTTGTCCTAGATA
TTTATGATTAAGTTATACAAATGTTCTTAACAGGAAGCCGATTTGCTGTT
TGTTACTTTCACAGGAAGGCTATGTACCATTTTATGGCATTTTCATCGTG
CCACTAAAACTCACTTCTATAAATTTTATATTGTTTTGATCCCTAGACTG
TGTTTGGAATGGATTGGTGGACGAATTGATATCCGACCGCGCGGACGTGG
CACTCGCTCCGTTAACGGCAACCTCTCATCGCATAAGAGTGATCGATTTC
ACTGAACATATTATCACCACAAACATTGCTGTTGTCTCACGTAACAAACC
TGAAGAACTAGAATTCATTAACTGGGAATTCCTCAAGAGTCTCGATTGGA
CTTTACTACTCGCCTTATTGATCACACTACTGATTGTCTGCTCAGCTTTA
TTCACGGTTGAATGGCTTATGAGAAAAATGATGAGAAACTTCAAAAAGAC
TGGTCGATACCCGACTAGAGAAGCATTTTCATATGGCGCAGGGTTAACCT
TCCAACGTGATTTAGCAGGTAAAACACCCAATCGGTGGGCCACAAGAATT
ATCGCCATTTCTTATGCGGTTGCCTTGACGATCATCATGTCAACATACAC
GGCTAATCTGACGGCAACGAATATCGCTGATGCAACCAACGACTTCAAAG
GGCTGAAAGATGAAAAGGTGCACTTTGATCCCTTGATACATACTTGACAA
ATCGGTGTTTTCTAGAATTAAATATCGAGAAATTTGCGAAATATCACGTG
GTTCGAACCGACGATGAAGGAGTCGCCAACGTCTTCACAGGGTGAGAATT
TAATATGATTGAATAGACCTTATCGGAGTTTTTTATATTTCTAAAAAGGC
GATGTATTGTGGGATTGTTTCGAGTGTATTACAATAGAAATCTATTAGGA
ATTCCTTGAGGAAATTCTATTGTAATACACTTGAAACAATCCCACAATGC
ATCGCTTTTTTAGAAAAATCAAAAACTCCGATAAAGTCTATTTGCAACCA
CCAGCAGAGTAGAATCCCTGATCAAATTTTCACAAATTCCCACCCAAAGT
GTCTTGTTTATTGTTAGTTCTACACTAATCTTCTCTATTTGTCTCGAACT
TATCACTGCTCATCACTGCACCCAGATACATAAATTTTCATCCAACACGC
TAAATCTTCGACATCTGGAAGGTTTAGAGTACGGAATTTTGCAAGATCGC
GTCAGAGATATTGTAGCGGGTCCAACAAATTATATTTTCAGTTTTACGCG
CAAGGGTAGTTGAACTCGACTGGGGATGTGGTATATCCGCTATCGGAATA
TCAGATAAGTCTCAGGATGAAGAAAGGAGTTTTACAATACTGGAATAATC
AACTTGAAAGAAAACAATTTTTCTCAAATTTTCTCAAAAATTCTATTTTT
ACAGTCAACTTGGTGCATACATCTCGGACTACCATTCATTGGCATCGAAA
ATCAGTCAACAGCTCGATTATTGTGAAAACCTTCAAATGAAAGTGGAAAA
ATTTGTTTTCTTCAATAGTTTTGGAACACAGAAAAATTCCAAATTAACCA
ACATTTTCTCATCAGCTTTACGTGAACTCAAAGCTACAAATGATCTGGAT
GTTTCCTTAAAGCGCTGGTTCAATACATGCGAAGGACCCGATATGAAAGT
CTATCCTTTCACTTTCCAATACGCCGGAGGGATGGTCCTTCTAGTTACTC
TTTTTCTAGCTTTGGCGATTCTTGTATTACTAGTGGAAAGTTTATACTCA
TACATGACAGTATCTAAGAAATCAACATTTTCAATCAATGATGTCGACTG
AAAGAAAACAAAGAGGAGAAGAAGATAACCACCCTTTGGACCGTTAAGAC
CATCAACCATGGAAGAATGAACATTATGCAGGCTCAGTTTTTGATACCTA
AACAATGGTTCTATTCTCAGAATTTTTTTCTTTCAAATTTGTTTAAGAAG
AATAGAATGCTAAGCATAAATGCGAGCCTGATATAGGGGTAGACACTTGC
TTATAAAAGAAAACATGTAATTCAAACCATGGAAGAATGAGACCCTCTTA
AACTTTACAAACTGTACAGAATCAAAATCTATTTTTTTTACATTTGTAAT
ACTAAACGTAATGTATTTATGATTTCCGAAAAACTTAGGTCGTTGACTCA
TTTTGATACTATACTGCTCTTATAAAAAAAGTGTTAATCTAATATCTCAG
CTCTACTGACTTGTTAT

Coding sequence (CDS) from alignment at scaffold_369:140654..145870-

>TCONS_00062572 ID=TCONS_00062572|Name=TCONS_00062572|organism=Clytia hemisphaerica|type=CDS|length=2556bp|location=Sequence derived from alignment at scaffold_369:140654..145870- (Clytia hemisphaerica)
ACTGTGTTTGGAATGGATTGGTGGACGAATTGATATCCGACCGCGCGGAC
GTGGCACTCGCTCCGTTAACGGCAACCTCTCATCGCATAAGAGTGATCGA
TTTCACTGAACATATTATCACCACAAACATTGCTGTTGTCTCACGTAACA
AACCTGAAGAACTAGAATTCATTAACTGGGAATTCCTCAAGAGTCTCGAT
TGGACTTTACTACTCGCCTTATTGATCACACTACTGATTGTCTGCTCAGC
TTTATTCACGGTTGAATGGCTTATGAGAAAAATGATGAGAAACTTCAAAA
AGACTGGTCGATACCCGACTAGAGAAGCATTTTCATATGGCGCAGGGTTA
ACCTTCCAACGTGATTTAGCAGGTAAAACACCCAATCGGTGGGCCACAAG
AATTATCGCCATTTCTTATGCGGTTGCCTTGACGATCATCATGTCAACAT
ACACGGCTAATCTGACGGCAACGAATATCGCTGATGCAACCAACGACTTC
AAAGGGCTGAAAGATGAAAAGGTGCACTTTGATCCCTTGATACATACTTG
AGGTATGTGATTGATGTAGCTGAAATGATGTTTGATTATTTGGGGTATGA
TTGGACTTTGTATTTGGTACCTGATGGATTCACTAATTATAATGATGTTA
CAGATGAAACACAAGAAAACACGATGTTCCAAGAAGTACAAATCGATCAT
TCGAGCCGTCAGTATCATTGATTCACCTTACCTCGTTGAAACTCCTCATG
AAGTGTCAGAGTTTGGAAATACTGTGTGCAAAGAAGGTTCATTTCCATGT
CGTAAAGCTACTGACGATGTTGGTAATTCCTGGGTGATTCGTTGCTGCGC
AGACTGTGTTTGGAATGGATTGGTGGACGAATTGATATCCGACCGCGCGG
ACGTGGCACTCGCTCCGTTAACGGCAACCTCTCATCGCATAAGAGTGATC
GATTTCACTGAACATATTATCACCACAAACATTGCTGTTGTCTCACGTAA
CAAACCTGAAGAACTAGAATTCATTAACTGGGAATTCCTCAAGAGTCTCG
ATTGGACTTTACTACTCGCCTTATTGATCACACTACTGATTGTCTGCTCA
GCTTTATTCACGGTTGAATGGCTTATGAGAAAAATGATGAGAAACTTCAA
AAAGACTGGTCGATACCCGACTAGAGAAGCATTTTCATATGGCGCAGGGT
TAACCTTCCAACGTGATTTAGCAGGTAAAACACCCAATCGGTGGGCCACA
AGAATTATCGCCATTTCTTATGCGGTTGCCTTGACGATCATCATGTCAAC
ATACACGGCTAATCTGACGGCAACGAATATCGCTGATGCAACCAACGACT
TCAAAGGGCTGAAAGATGAAAAGGTGCACTTTGATCCCTTGATACATACT
TGAGGTATGTGATTGATGTAGCTGAAATGATGTTTGATTATTTGGGGTAT
GATTGGACTTTGTATTTGGTACCTGATGGATTCACTAATTATAATGATGT
TACAGATGAAACACAAGAAAACACGATGTTCCAAGAAGTACAAATCGATC
ATTCGAGCCGTCAGTATCATTGATTCACCTTACCTCGTTGAAACTCCTCA
TGAAGTGTCAGAGTTTGGAAATACTGTGTGCAAAGAAGGTTCATTTCCAT
GTCGTAAAGCTACTGACGATGTTGGTAATTCCTGGGTGATTCGTTGCTGC
GCAGACTGTGTTTGGAATGGATTGGTGGACGAATTGATATCCGACCGCGC
GGACGTGGCACTCGCTCCGTTAACGGCAACCTCTCATCGCATAAGAGTGA
TCGATTTCACTGAACATATTATCACCACAAACATTGCTGTTGTCTCACGT
AACAAACCTGAAGAACTAGAATTCATTAACTGGGAATTCCTCAAGAGTCT
CGATTGGACTTTACTACTCGCCTTATTGATCACACTACTGATTGTCTGCT
CAGCTTTATTCACGGTTGAATGGCTTATGAGAAAAATGATGAGAAACTTC
AAAAAGACTGGTCGATACCCGACTAGAGAAGCATTTTCATATGGCGCAGG
GTTAACCTTCCAACGTGATTTAGCAGGTAAAACACCCAATCGGTGGGCCA
CAAGAATTATCGCCATTTCTTATGCGGTTGCCTTGACGATCATCATGTCA
ACATACACGGCTAATCTGACGGCAACGAATATCGCTGATGCAACCAACGA
CTTCAAAGGGCTGAAAGATGAAAAGGTGCACTTTGATCCCTTGATACATA
CTTGAGGTATGTGATTGATGTAGCTGAAATGATGTTTGATTATTTGGGGT
ATGATTGGACTTTGTATTTGGTACCTGATGGATTCACTAATTATAATGAT
GTTACAGATGAAACACAAGAAAACACGATGTTCCAAGAAGTACAAATCGA
TCATTCGAGCCGTCAGTATCATTGATTCACCTTACCTCGTTGAAACTCCT
CATGAAGTGTCAGAGTTTGGAAATACTGTGTGCAAAGAAGGTTCATTTCC
ATGTCGTAAAGCTACTGACGATGTTGGTAATTCCTGGGTGATTCGTTGCT
GCGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039203XLOC_039203Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062572-proteinTCONS_00062572-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062572-exon-scaffold_369-1575043694:145598..145870TCONS_00062572-exon-scaffold_369-1575043694:145598..145870Clytia hemisphaericaexon
TCONS_00062572-exon-scaffold_369-1575043694:144033..144472TCONS_00062572-exon-scaffold_369-1575043694:144033..144472Clytia hemisphaericaexon
TCONS_00062572-exon-scaffold_369-1575043694:143334..143575TCONS_00062572-exon-scaffold_369-1575043694:143334..143575Clytia hemisphaericaexon
TCONS_00062572-exon-scaffold_369-1575043694:143014..143115TCONS_00062572-exon-scaffold_369-1575043694:143014..143115Clytia hemisphaericaexon
TCONS_00062572-exon-scaffold_369-1575043694:142080..142724TCONS_00062572-exon-scaffold_369-1575043694:142080..142724Clytia hemisphaericaexon
TCONS_00062572-exon-scaffold_369-1575043694:140654..141466TCONS_00062572-exon-scaffold_369-1575043694:140654..141466Clytia hemisphaericaexon
TCONS_00062572-exon-scaffold_369-1510915933:145598..145870TCONS_00062572-exon-scaffold_369-1510915933:145598..145870Clytia hemisphaericaexon
TCONS_00062572-exon-scaffold_369-1510915933:144033..144472TCONS_00062572-exon-scaffold_369-1510915933:144033..144472Clytia hemisphaericaexon
TCONS_00062572-exon-scaffold_369-1510915933:143334..143575TCONS_00062572-exon-scaffold_369-1510915933:143334..143575Clytia hemisphaericaexon
TCONS_00062572-exon-scaffold_369-1510915933:143014..143115TCONS_00062572-exon-scaffold_369-1510915933:143014..143115Clytia hemisphaericaexon
TCONS_00062572-exon-scaffold_369-1510915933:142080..142724TCONS_00062572-exon-scaffold_369-1510915933:142080..142724Clytia hemisphaericaexon
TCONS_00062572-exon-scaffold_369-1510915933:140654..141466TCONS_00062572-exon-scaffold_369-1510915933:140654..141466Clytia hemisphaericaexon
TCONS_00062572-exon-scaffold_369-1491911889:145598..145870TCONS_00062572-exon-scaffold_369-1491911889:145598..145870Clytia hemisphaericaexon
TCONS_00062572-exon-scaffold_369-1491911889:144033..144472TCONS_00062572-exon-scaffold_369-1491911889:144033..144472Clytia hemisphaericaexon
TCONS_00062572-exon-scaffold_369-1491911889:143334..143575TCONS_00062572-exon-scaffold_369-1491911889:143334..143575Clytia hemisphaericaexon
TCONS_00062572-exon-scaffold_369-1491911889:143014..143115TCONS_00062572-exon-scaffold_369-1491911889:143014..143115Clytia hemisphaericaexon
TCONS_00062572-exon-scaffold_369-1491911889:142080..142724TCONS_00062572-exon-scaffold_369-1491911889:142080..142724Clytia hemisphaericaexon
TCONS_00062572-exon-scaffold_369-1491911889:140654..141466TCONS_00062572-exon-scaffold_369-1491911889:140654..141466Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_369supercontigscaffold_369:140654..145870 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.12308	0.0900166	0	0.0170424	0	0.0163949	0	0	0.0907523	0.12847	0.095595	0.109971	2.98819	3.49599	1.68772	1.53806	0.726033	0.805631	4.71011	4.67068	1.41313	0.934459	5.02743	4.39425	1.4536	1.99198	14.7179	9.68105	0.290294	0.24357
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001320Iontro_rcpt
IPR019594Glu/Gly-bd
Vocabulary: Molecular Function
TermDefinition
GO:0004970ionotropic glutamate receptor activity
GO:0005234extracellular-glutamate-gated ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0005234 extracellular-glutamate-gated ion channel activity
molecular_function GO:0004970 ionotropic glutamate receptor activity
Blast
[Close]
BLAST of TCONS_00062572 vs. Swiss-Prot (Human)
Match: NMD3B (Glutamate receptor ionotropic, NMDA 3B OS=Homo sapiens GN=GRIN3B PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 3.635e-18
Identity = 66/225 (29.33%), Postives = 109/225 (48.44%), Query Frame = 1 
Query:  943 RCCAGYVIDVAEMMFDYLGYDWTLYLVPDGFTNYNDVTDCVWNGLVDELISDRADVALAPLTATSHRIRVIDFTEHIITTNIAVV--SRNKPEELEFINWEFXXXXXXXXXXXXXXXXXIVCSALFTV--EWLMRKMMRNFKKTGRYPTREAFSYGAGLT------FQRDLAGKTPNRWATRIIAISYAVALTIIMSTYTANLTATNIADAT-NDFKGLKDEKVH 1584
            +CC GY ID+ E + +   +D+ LYLV DG   Y  + D  W GLV +L++ RA +A+   +  S R +V+DFT    +T++ ++  +R+    +    W    S    +  A      +  +ALF    EW   +        GR      FSY + L       F+R ++ KTP     R++   +A+   +++S+YTANL A  + D T  +  G+ D K+H
Sbjct:  474 KCCYGYCIDLLERLAEDTPFDFELYLVGDG--KYGALRDGRWTGLVGDLLAGRAHMAVTSFSINSARSQVVDFTSPFFSTSLGIMVRARDTASPIGAFMWPLHWSTWLGVFAA------LHLTALFLTVYEW---RSPYGLTPRGRN-RSTVFSYSSALNLCYAILFRRTVSSKTPKCPTGRLLMNLWAIFCLLVLSSYTANLAAVMVGDKTFEELSGIHDPKLH 686
The following BLAST results are available for this feature:
BLAST of TCONS_00062572 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NMD3B3.635e-1829.33Glutamate receptor ionotropic, NMDA 3B OS=Homo sap... [more]
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