|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062572 ID=TCONS_00062572|Name=TCONS_00062572|organism=Clytia hemisphaerica|type=transcript|length=2515bp ctaccatcatcatcatctaccTTAAACGTATCATCCAATATGGCTCCGGT GTTGTTACTTCGCCTGACAGTGTTCTTGTTAACATACCCAGTGCTGGCTA TCTCAATCAACAAAAACTGCACAACATGGTTTACCGGGGAAAATGTTTTA TCCAGTAATTTGAACACAATACCTCTGGGTTGGTACATACCACCTTTCAC CCTCAAATCAGCAGATGTTTTCGAGGAAATGATACATATTTTGAACACGA AGCAGTTTAAAGAAGGTGGACAGCACCATGACTGCATGGACTATCTGACA AATGACGTGACAACAAAAACATCTTCATTCCTTCAAAACCTTCTTAAACA AACACACTCTTCCAAGATGGCGCTTATCACCAATAACAATAAAGCTTATC ACAGCACAACAGCAAACATCATCGATAAGTTGACCAATATTGAAGTATCA GAATTCAGTGTCGGTACACTTAATGACACCATCTTGAATAATTTCTTCAA CACTATTTTACAATTGCAAGCTCACACTGTCTTATTACTGATCGAAGAAG CCGACTGGGAAATAGTGAAGAAATTTCTTTCagaaagtgtgaacaatgat gTCTTTTAGATTCGTCTCTCCTTTTCGAAGAATGATACTGAAGCACACAA CGATGGAGTGACTTGTTCGTATGAACTCTCCATCACAGATCTTCTTGTCG GAAGCAATATCAGTTATACTGAGCAACAAGAGAACGAACAGAAAATAATC GATGCCATGAAACACAAGAAAACACGATGTTCCAAGAAGTACAAATCGAT CATTCGAGCCGTCAGTATCATTGATTCACCTTACCTCGTTGAAACTCCTC ATGAAGTGTCAGAGTTTGGAAATACTGTGTGCAAAGAAGGTTCATTTCCA TGTCGTAAAGCTACTGACGATGTTGGTAATTCCTGGGTGATTCGTTGCTG CGCAGGGTATGTGATTGATGTAGCTGAAATGATGTTTGATTATTTGGGGT ATGATTGGACTTTGTATTTGGTACCTGATGGATTCACTAATTATAATGAT GTTACAGACTGTGTTTGGAATGGATTGGTGGACGAATTGATATCCGACCG CGCGGACGTGGCACTCGCTCCGTTAACGGCAACCTCTCATCGCATAAGAG TGATCGATTTCACTGAACATATTATCACCACAAACATTGCTGTTGTCTCA CGTAACAAACCTGAAGAACTAGAATTCATTAACTGGGAATTCCTCAAGAG TCTCGATTGGACTTTACTACTCGCCTTATTGATCACACTACTGATTGTCT GCTCAGCTTTATTCACGGTTGAATGGCTTAtgagaaaaatgatgagaaac tTCAAAAAGACTGGTCGATACCCGACTAGAGAAGCATTTTCATATGGCGC AGGGTTAACCTTCCAACGTGATTTAGCAGGTAAAACACCCAATCGGTGGG CCACAAGAATTATCGCCATTTCTTATGCGGTTGCCTTGACGATCATCATG TCAACATACACGGCTAATCTGACGGCAACGAATATCGCTGATGCAACCAA CGACTTCAAAGGGCTGAAAGATGAAAAGGTGCACTTTGATCCCTTGATAC ATACTTGACAAATCGGTGTTTTCTAGAATTAAATATCGAGAAATTTGCGA AATATCACGTGGTTCGAACCGACGATGAAGGAGTCGCCAACGTCTTCACA GGTCAACTTGGTGCATACATCTCGGACTACCATTCATTGGCATCGAAAAT CAGTCAACAGCTCGATTATTGTGAAAACCTTCAAATGAAAGtggaaaaat ttgttttcttcaatagttttggaacacagAAAAATTCCAAATTAACCAAC ATTTTCTCATCAGCTTTACGTGAACTCAAAGCTACAAATGATCTGGATGT TTCCTTAAAGCGCTGGTTCAATACATGCGAAGGACCCGATATGAAAGTCT ATCCTTTCACTTTCCAATACGCCGGAGGGATGGTCCTTCTAGTTACTCTT TTTCTAGCTTTGGCGATTCTTGTATTACTAGTGGAAAGTTTATACTCATA CATGACAGTATCTAagaaatcaacattttcaatcAATGATGTCGActgaa agaaaacaaagagGAGAAGAAGATAACCACCCTTTGGACCGTTAAGACCA TCAACCATGGAAGAATGAACattatgcaggctcagtttttgataCCTAAA CAATGGTTCTATTctcagaatttttttctttcaaatttgtttaagaagaa tagaatgctaagcataaatgcgagcctgatataggggtagacacttgctt ataaaagaaaacatgtAATTCAAACCATGGAAGAATGAGACCCTCTTAAA CTTTACAAACTGTACAGaatcaaaatctattttttttacatttgtaATAC TAAACGTAATGTATTTATGATTTCCGAAAAACTTAGGTCGTTGACTCATT TTGATACTATactgctcttataaaaaaagtgttaaTCTAATATCTCAGCT CTACTGACTTGTTAT Run BLAST on NCBI protein sequence of TCONS_00062572-protein >TCONS_00062572-protein ID=TCONS_00062572-protein|Name=TCONS_00062572-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MKHKKTRCSKKYKSIIRAVSIIDSPYLVETPHEVSEFGNTVCKEGSFPCR KATDDVGNSWVIRCCAGYVIDVAEMMFDYLGYDWTLYLVPDGFTNYNDVT DCVWNGLVDELISDRADVALAPLTATSHRIRVIDFTEHIITTNIAVVSRN KPEELEFINWEFLKSLDWTLLLALLITLLIVCSALFTVEWLMRKMMRNFK KTGRYPTREAFSYGAGLTFQRDLAGKTPNRWATRIIAISYAVALTIIMST YTANLTATNIADATNDFKGLKDEKVHFDPLIHT Run BLAST on NCBI transcript from alignment at scaffold_369:140654..145870- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062572 ID=TCONS_00062572|Name=TCONS_00062572|organism=Clytia hemisphaerica|type=transcript|length=5217bp|location=Sequence derived from alignment at scaffold_369:140654..145870- (Clytia hemisphaerica) CTACCATCATCATCATCTACCTTAAACGTATCATCCAATATGGCTCCGGT
GTTGTTACTTCGCCTGACAGTGTTCTTGTTAACATACCCAGTGCTGGCTA
TCTCAATCAACAAAAACTGCACAACATGGTTTACCGGGGAAAATGTTTTA
TCCAGTAATTTGAACACAATACCTCTGGGTTGGTACATACCACCTTTCAC
CCTCAAATCAGCAGATGTTTTCGAGGAAATGATACATATTTTGAACACGA
AGCAGTTTAAAGAAGGTGGACAGGTAGGAAAATATCTACATATTTTGAGA
CATGTTGAAAGAAACATGTTTGTTGTTTGAATATAATGATTTGGGTTTTG
CTACTGCGCAGAGCAAAAAGGTGTGGTATTGACCCTTAAAAAAATTATAT
TCCTTCTCCTTGACAGCAATATAGAATGTTATCATTTTCTAACGGATGAC
TATTTTATCCCTGCTTTACTAATTTTTTGGACCTACCTCCGGATACCCCG
GTGGAGGTCCTTTAAATTAACCAATGTTCGTCCGTCCGTTCGTTCGTCTG
TTACCAGCTTTTCTCGGGATTGGCTCATTACTTTTTTCTGTTTTTTGGCA
CAATGATGCAAAATGATGATTTCTAAAGAGTAACGGAGCCCGATTTTCGA
AATATGCCGGAAAATTTGGTATTTTTTCGAGATTTTATCATTAGTTCTTT
CTGATTTTTTGCTCAAAGATGCGTATTAACAATGCCCAAAACATTGCCGA
GTGTGATTTTTGAGAAAATCTTTTTCCGGCCGAAAATGCCGGAAATATAA
CGGAAATCGCCGTTTTTCTGGATTTTCATTGGACCTTTTCCTTATAATAT
TAATAGCAATGCCCACCATCGAAGCATGTTTCAATTTTCAATAAAATTGA
TTTTTGAAGCCGGAACTATTCAAAAATCGCTGGAACAACCTATTTTCGCC
GGAAAGACTTGAATATTTTCGACTTGAATTTCTCGAGCTGTACTTTGTAT
TTTTTTATGAAATTTTGCACACTGATGCAAAATGACAATACCTAAAATGT
GACGGAGCCCGATATGTTTTTCACACAAAAACATTATTGATAACAATGCT
CACCATCAAGCATGATTCAATGGTCAATAAAACTGATTTTTGCAACCAGA
ACTTTCTATTTATTTTTTCCTACAGCCCTTCCCTCTCCCCCCATCAACAA
TCAATGATGAATTTATTGCGTTATGCATTTTCACTAAACGCTATATTTTC
TTTTTCATTTTTCTCCTCGCATTGCTATCTAACTTTCATCATCAGGTAGG
TCCATTCAGCATCTAGCTTGTTCAACCTGACTTTTAGAAAGTTCTGGCTA
TGACAAAACTACACCCAGTATTTATTTTCAACTTTATTCTTTCCAAAGCA
CCATGACTGCATGGACTATCTGACAAATGACGTGACAACAAAAACATCTT
CATTCCTTCAAAACCTTCTTAAACAAACACACTCTTCCAAGATGGCGCTT
ATCACCAATAACAATAAAGCTTATCACAGCACAACAGCAAACATCATCGA
TAAGTTGACCAATATTGAAGTATCAGAATTCAGTGTCGGTACACTTAATG
ACACCATCTTGAATAATTTCTTCAACACTATTTTACAATTGCAAGCTCAC
ACTGTCTTATTACTGATCGAAGAAGCCGACTGGGAAATAGTGAAGAAATT
TCTTTCAGAAAGTGTGAACAATGATGTCTTTTAGATTCGTCTCTCCTTTT
CGAAGAATGATACTGAAGCACACAACGATGGAGTGACTTGTTCGTATGAA
CTCTCCATCACAGATCTTCTTGTCGGAAGCAATATCAGGTATACATGTTT
TGTTCTTTGTACTTATTTGTGATAGGTTAACATAAATACAAAGGCTTTTC
CATTGAAGACTTAATTACAGTAATCACTCGAGGGAAAATCAATTGAGGTC
AAATCCCTCTAGTACTAACTAACTATCATTGTATATTCAAATCTTTCTGT
GATTCGAGGTAAAATATCGGCCTCTTAGCTCGAAAAAACTCGTTGGCTAA
TTTGGAGAGATTTCTTGGTCCCACCTACAATCAAAATTATAATATTAGGG
GGATTCCCTTCAAAATTGTGGACACAACAACTCATTTTTAAGTGCTTTAA
CTAAAGCCAAACGACCTTCCGATCTCAGGATAAAAAAGCTTAAAAAGTTC
CATTAAGGCTGAGTATCAAGTCTGGAAACCATACTAAAACCCTCCAAAAT
AAAGTGAAAGTACTGAAATAGGAACAACTGCAATTTCTTCTTCAGTTATA
CTGAGCAACAAGAGAACGAACAGAAAATAATCGATGCCATGAAACACAAG
AAAACACGATGTTCCAAGAAGTACAAATCGATCATTCGAGCCGTCAGTAT
CATTGATTCACCTTACCTCGTTGAAACTCCTCATGAAGTGTCAGAGTTTG
GAAATACTGTGTGCAAAGAAGGTTCATTTCCATGTCGTAAAGCTACTGAC
GATGTTGGTAATTCCTGGGTGATTCGTTGCTGCGCAGGTTAGTAGTGTTG
TTCGCCTCACACATTTATTATGTAGTTTTTTGTTTAAGGTTCAAATGTAT
CGCCCAGTCAACTCTTTACTCTAAGATACCGAATAAAGGGGAAGGTACCT
CCAAAATTATAAGCTAAAACCAGCAGTGAATAAACGGGGAGGGAGGTAAG
ATAACCAGCCAGTCTAGTAAAATTTTAATTCATCTCTTTCTACTTTACTT
TCCAGGGTATGTGATTGATGTAGCTGAAATGATGTTTGATTATTTGGGGT
ATGATTGGACTTTGTATTTGGTACCTGATGGATTCACTAATTATAATGAT
GTTACAGGTAATTTTACGCTCTATGTCGAAGCGGAGGTCTGAAAGGGAAC
AAGGATTACCATCTTCACCAATACTTCGCCGATGTGCATCGCTTCGTATT
GTTACAAAAAAACTTTGACTGAGCTTTTGCGAAACGACTTGTCCTAGATA
TTTATGATTAAGTTATACAAATGTTCTTAACAGGAAGCCGATTTGCTGTT
TGTTACTTTCACAGGAAGGCTATGTACCATTTTATGGCATTTTCATCGTG
CCACTAAAACTCACTTCTATAAATTTTATATTGTTTTGATCCCTAGACTG
TGTTTGGAATGGATTGGTGGACGAATTGATATCCGACCGCGCGGACGTGG
CACTCGCTCCGTTAACGGCAACCTCTCATCGCATAAGAGTGATCGATTTC
ACTGAACATATTATCACCACAAACATTGCTGTTGTCTCACGTAACAAACC
TGAAGAACTAGAATTCATTAACTGGGAATTCCTCAAGAGTCTCGATTGGA
CTTTACTACTCGCCTTATTGATCACACTACTGATTGTCTGCTCAGCTTTA
TTCACGGTTGAATGGCTTATGAGAAAAATGATGAGAAACTTCAAAAAGAC
TGGTCGATACCCGACTAGAGAAGCATTTTCATATGGCGCAGGGTTAACCT
TCCAACGTGATTTAGCAGGTAAAACACCCAATCGGTGGGCCACAAGAATT
ATCGCCATTTCTTATGCGGTTGCCTTGACGATCATCATGTCAACATACAC
GGCTAATCTGACGGCAACGAATATCGCTGATGCAACCAACGACTTCAAAG
GGCTGAAAGATGAAAAGGTGCACTTTGATCCCTTGATACATACTTGACAA
ATCGGTGTTTTCTAGAATTAAATATCGAGAAATTTGCGAAATATCACGTG
GTTCGAACCGACGATGAAGGAGTCGCCAACGTCTTCACAGGGTGAGAATT
TAATATGATTGAATAGACCTTATCGGAGTTTTTTATATTTCTAAAAAGGC
GATGTATTGTGGGATTGTTTCGAGTGTATTACAATAGAAATCTATTAGGA
ATTCCTTGAGGAAATTCTATTGTAATACACTTGAAACAATCCCACAATGC
ATCGCTTTTTTAGAAAAATCAAAAACTCCGATAAAGTCTATTTGCAACCA
CCAGCAGAGTAGAATCCCTGATCAAATTTTCACAAATTCCCACCCAAAGT
GTCTTGTTTATTGTTAGTTCTACACTAATCTTCTCTATTTGTCTCGAACT
TATCACTGCTCATCACTGCACCCAGATACATAAATTTTCATCCAACACGC
TAAATCTTCGACATCTGGAAGGTTTAGAGTACGGAATTTTGCAAGATCGC
GTCAGAGATATTGTAGCGGGTCCAACAAATTATATTTTCAGTTTTACGCG
CAAGGGTAGTTGAACTCGACTGGGGATGTGGTATATCCGCTATCGGAATA
TCAGATAAGTCTCAGGATGAAGAAAGGAGTTTTACAATACTGGAATAATC
AACTTGAAAGAAAACAATTTTTCTCAAATTTTCTCAAAAATTCTATTTTT
ACAGTCAACTTGGTGCATACATCTCGGACTACCATTCATTGGCATCGAAA
ATCAGTCAACAGCTCGATTATTGTGAAAACCTTCAAATGAAAGTGGAAAA
ATTTGTTTTCTTCAATAGTTTTGGAACACAGAAAAATTCCAAATTAACCA
ACATTTTCTCATCAGCTTTACGTGAACTCAAAGCTACAAATGATCTGGAT
GTTTCCTTAAAGCGCTGGTTCAATACATGCGAAGGACCCGATATGAAAGT
CTATCCTTTCACTTTCCAATACGCCGGAGGGATGGTCCTTCTAGTTACTC
TTTTTCTAGCTTTGGCGATTCTTGTATTACTAGTGGAAAGTTTATACTCA
TACATGACAGTATCTAAGAAATCAACATTTTCAATCAATGATGTCGACTG
AAAGAAAACAAAGAGGAGAAGAAGATAACCACCCTTTGGACCGTTAAGAC
CATCAACCATGGAAGAATGAACATTATGCAGGCTCAGTTTTTGATACCTA
AACAATGGTTCTATTCTCAGAATTTTTTTCTTTCAAATTTGTTTAAGAAG
AATAGAATGCTAAGCATAAATGCGAGCCTGATATAGGGGTAGACACTTGC
TTATAAAAGAAAACATGTAATTCAAACCATGGAAGAATGAGACCCTCTTA
AACTTTACAAACTGTACAGAATCAAAATCTATTTTTTTTACATTTGTAAT
ACTAAACGTAATGTATTTATGATTTCCGAAAAACTTAGGTCGTTGACTCA
TTTTGATACTATACTGCTCTTATAAAAAAAGTGTTAATCTAATATCTCAG
CTCTACTGACTTGTTAT Coding sequence (CDS) from alignment at scaffold_369:140654..145870- >TCONS_00062572 ID=TCONS_00062572|Name=TCONS_00062572|organism=Clytia hemisphaerica|type=CDS|length=2556bp|location=Sequence derived from alignment at scaffold_369:140654..145870- (Clytia hemisphaerica) ACTGTGTTTGGAATGGATTGGTGGACGAATTGATATCCGACCGCGCGGAC GTGGCACTCGCTCCGTTAACGGCAACCTCTCATCGCATAAGAGTGATCGA TTTCACTGAACATATTATCACCACAAACATTGCTGTTGTCTCACGTAACA AACCTGAAGAACTAGAATTCATTAACTGGGAATTCCTCAAGAGTCTCGAT TGGACTTTACTACTCGCCTTATTGATCACACTACTGATTGTCTGCTCAGC TTTATTCACGGTTGAATGGCTTATGAGAAAAATGATGAGAAACTTCAAAA AGACTGGTCGATACCCGACTAGAGAAGCATTTTCATATGGCGCAGGGTTA ACCTTCCAACGTGATTTAGCAGGTAAAACACCCAATCGGTGGGCCACAAG AATTATCGCCATTTCTTATGCGGTTGCCTTGACGATCATCATGTCAACAT ACACGGCTAATCTGACGGCAACGAATATCGCTGATGCAACCAACGACTTC AAAGGGCTGAAAGATGAAAAGGTGCACTTTGATCCCTTGATACATACTTG AGGTATGTGATTGATGTAGCTGAAATGATGTTTGATTATTTGGGGTATGA TTGGACTTTGTATTTGGTACCTGATGGATTCACTAATTATAATGATGTTA CAGATGAAACACAAGAAAACACGATGTTCCAAGAAGTACAAATCGATCAT TCGAGCCGTCAGTATCATTGATTCACCTTACCTCGTTGAAACTCCTCATG AAGTGTCAGAGTTTGGAAATACTGTGTGCAAAGAAGGTTCATTTCCATGT CGTAAAGCTACTGACGATGTTGGTAATTCCTGGGTGATTCGTTGCTGCGC AGACTGTGTTTGGAATGGATTGGTGGACGAATTGATATCCGACCGCGCGG ACGTGGCACTCGCTCCGTTAACGGCAACCTCTCATCGCATAAGAGTGATC GATTTCACTGAACATATTATCACCACAAACATTGCTGTTGTCTCACGTAA CAAACCTGAAGAACTAGAATTCATTAACTGGGAATTCCTCAAGAGTCTCG ATTGGACTTTACTACTCGCCTTATTGATCACACTACTGATTGTCTGCTCA GCTTTATTCACGGTTGAATGGCTTATGAGAAAAATGATGAGAAACTTCAA AAAGACTGGTCGATACCCGACTAGAGAAGCATTTTCATATGGCGCAGGGT TAACCTTCCAACGTGATTTAGCAGGTAAAACACCCAATCGGTGGGCCACA AGAATTATCGCCATTTCTTATGCGGTTGCCTTGACGATCATCATGTCAAC ATACACGGCTAATCTGACGGCAACGAATATCGCTGATGCAACCAACGACT TCAAAGGGCTGAAAGATGAAAAGGTGCACTTTGATCCCTTGATACATACT TGAGGTATGTGATTGATGTAGCTGAAATGATGTTTGATTATTTGGGGTAT GATTGGACTTTGTATTTGGTACCTGATGGATTCACTAATTATAATGATGT TACAGATGAAACACAAGAAAACACGATGTTCCAAGAAGTACAAATCGATC ATTCGAGCCGTCAGTATCATTGATTCACCTTACCTCGTTGAAACTCCTCA TGAAGTGTCAGAGTTTGGAAATACTGTGTGCAAAGAAGGTTCATTTCCAT GTCGTAAAGCTACTGACGATGTTGGTAATTCCTGGGTGATTCGTTGCTGC GCAGACTGTGTTTGGAATGGATTGGTGGACGAATTGATATCCGACCGCGC GGACGTGGCACTCGCTCCGTTAACGGCAACCTCTCATCGCATAAGAGTGA TCGATTTCACTGAACATATTATCACCACAAACATTGCTGTTGTCTCACGT AACAAACCTGAAGAACTAGAATTCATTAACTGGGAATTCCTCAAGAGTCT CGATTGGACTTTACTACTCGCCTTATTGATCACACTACTGATTGTCTGCT CAGCTTTATTCACGGTTGAATGGCTTATGAGAAAAATGATGAGAAACTTC AAAAAGACTGGTCGATACCCGACTAGAGAAGCATTTTCATATGGCGCAGG GTTAACCTTCCAACGTGATTTAGCAGGTAAAACACCCAATCGGTGGGCCA CAAGAATTATCGCCATTTCTTATGCGGTTGCCTTGACGATCATCATGTCA ACATACACGGCTAATCTGACGGCAACGAATATCGCTGATGCAACCAACGA CTTCAAAGGGCTGAAAGATGAAAAGGTGCACTTTGATCCCTTGATACATA CTTGAGGTATGTGATTGATGTAGCTGAAATGATGTTTGATTATTTGGGGT ATGATTGGACTTTGTATTTGGTACCTGATGGATTCACTAATTATAATGAT GTTACAGATGAAACACAAGAAAACACGATGTTCCAAGAAGTACAAATCGA TCATTCGAGCCGTCAGTATCATTGATTCACCTTACCTCGTTGAAACTCCT CATGAAGTGTCAGAGTTTGGAAATACTGTGTGCAAAGAAGGTTCATTTCC ATGTCGTAAAGCTACTGACGATGTTGGTAATTCCTGGGTGATTCGTTGCT GCGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00062572-exon-scaffold_369-1575043694:145598..145870 | TCONS_00062572-exon-scaffold_369-1575043694:145598..145870 | Clytia hemisphaerica | exon |
TCONS_00062572-exon-scaffold_369-1575043694:144033..144472 | TCONS_00062572-exon-scaffold_369-1575043694:144033..144472 | Clytia hemisphaerica | exon |
TCONS_00062572-exon-scaffold_369-1575043694:143334..143575 | TCONS_00062572-exon-scaffold_369-1575043694:143334..143575 | Clytia hemisphaerica | exon |
TCONS_00062572-exon-scaffold_369-1575043694:143014..143115 | TCONS_00062572-exon-scaffold_369-1575043694:143014..143115 | Clytia hemisphaerica | exon |
TCONS_00062572-exon-scaffold_369-1575043694:142080..142724 | TCONS_00062572-exon-scaffold_369-1575043694:142080..142724 | Clytia hemisphaerica | exon |
TCONS_00062572-exon-scaffold_369-1575043694:140654..141466 | TCONS_00062572-exon-scaffold_369-1575043694:140654..141466 | Clytia hemisphaerica | exon |
TCONS_00062572-exon-scaffold_369-1510915933:145598..145870 | TCONS_00062572-exon-scaffold_369-1510915933:145598..145870 | Clytia hemisphaerica | exon |
TCONS_00062572-exon-scaffold_369-1510915933:144033..144472 | TCONS_00062572-exon-scaffold_369-1510915933:144033..144472 | Clytia hemisphaerica | exon |
TCONS_00062572-exon-scaffold_369-1510915933:143334..143575 | TCONS_00062572-exon-scaffold_369-1510915933:143334..143575 | Clytia hemisphaerica | exon |
TCONS_00062572-exon-scaffold_369-1510915933:143014..143115 | TCONS_00062572-exon-scaffold_369-1510915933:143014..143115 | Clytia hemisphaerica | exon |
TCONS_00062572-exon-scaffold_369-1510915933:142080..142724 | TCONS_00062572-exon-scaffold_369-1510915933:142080..142724 | Clytia hemisphaerica | exon |
TCONS_00062572-exon-scaffold_369-1510915933:140654..141466 | TCONS_00062572-exon-scaffold_369-1510915933:140654..141466 | Clytia hemisphaerica | exon |
TCONS_00062572-exon-scaffold_369-1491911889:145598..145870 | TCONS_00062572-exon-scaffold_369-1491911889:145598..145870 | Clytia hemisphaerica | exon |
TCONS_00062572-exon-scaffold_369-1491911889:144033..144472 | TCONS_00062572-exon-scaffold_369-1491911889:144033..144472 | Clytia hemisphaerica | exon |
TCONS_00062572-exon-scaffold_369-1491911889:143334..143575 | TCONS_00062572-exon-scaffold_369-1491911889:143334..143575 | Clytia hemisphaerica | exon |
TCONS_00062572-exon-scaffold_369-1491911889:143014..143115 | TCONS_00062572-exon-scaffold_369-1491911889:143014..143115 | Clytia hemisphaerica | exon |
TCONS_00062572-exon-scaffold_369-1491911889:142080..142724 | TCONS_00062572-exon-scaffold_369-1491911889:142080..142724 | Clytia hemisphaerica | exon |
TCONS_00062572-exon-scaffold_369-1491911889:140654..141466 | TCONS_00062572-exon-scaffold_369-1491911889:140654..141466 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_369 | supercontig | scaffold_369:140654..145870 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0004970 | ionotropic glutamate receptor activity |
GO:0005234 | extracellular-glutamate-gated ion channel activity |
Vocabulary: Cellular Component
Term | Definition |
GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
cellular_component |
GO:0016020 |
membrane |
molecular_function |
GO:0005234 |
extracellular-glutamate-gated ion channel activity |
molecular_function |
GO:0004970 |
ionotropic glutamate receptor activity |
Blast
BLAST of TCONS_00062572 vs. Swiss-Prot (Human)
Match: NMD3B (Glutamate receptor ionotropic, NMDA 3B OS=Homo sapiens GN=GRIN3B PE=2 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 3.635e-18 Identity = 66/225 (29.33%), Postives = 109/225 (48.44%), Query Frame = 1
Query: 943 RCCAGYVIDVAEMMFDYLGYDWTLYLVPDGFTNYNDVTDCVWNGLVDELISDRADVALAPLTATSHRIRVIDFTEHIITTNIAVV--SRNKPEELEFINWEFXXXXXXXXXXXXXXXXXIVCSALFTV--EWLMRKMMRNFKKTGRYPTREAFSYGAGLT------FQRDLAGKTPNRWATRIIAISYAVALTIIMSTYTANLTATNIADAT-NDFKGLKDEKVH 1584
+CC GY ID+ E + + +D+ LYLV DG Y + D W GLV +L++ RA +A+ + S R +V+DFT +T++ ++ +R+ + W S + A + +ALF EW + GR FSY + L F+R ++ KTP R++ +A+ +++S+YTANL A + D T + G+ D K+H
Sbjct: 474 KCCYGYCIDLLERLAEDTPFDFELYLVGDG--KYGALRDGRWTGLVGDLLAGRAHMAVTSFSINSARSQVVDFTSPFFSTSLGIMVRARDTASPIGAFMWPLHWSTWLGVFAA------LHLTALFLTVYEW---RSPYGLTPRGRN-RSTVFSYSSALNLCYAILFRRTVSSKTPKCPTGRLLMNLWAIFCLLVLSSYTANLAAVMVGDKTFEELSGIHDPKLH 686
The following BLAST results are available for this feature:
|