TCONS_00062522 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062522
Unique NameTCONS_00062522
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length464

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062522 ID=TCONS_00062522|Name=TCONS_00062522|organism=Clytia hemisphaerica|type=transcript|length=464bp
GTTCATACTTCTTTTTCAATGAGAACGATTGTACTTCCTCTGTTGCTTTA
GTGAAGAAGTattgaaaagttgatttttcacATGGTTGAAGAGCGATACG
TGACAATCTTTTCTTGCGACATGCAAAGTTTGATACAAATTGAAATATCG
CGCTCATGATTGCCAATGATTTTGTCCAACCATACTTCATTGGGTTCACA
AGGTACTCTGAGAAGTCGAACCGTTGATTTATGGATGAAAAGTGGATTGA
TGGAGGTATAGTGATTGGATCAACAATTGGGAGAATCTGTTCTTTCTTTG
CAGCTTTGAGTTCTTCATTTGTGAGTTTGACTTGATTGACAGATTTCACG
GGGAAGGTATCCTCAGGATCATGCATCCAATCAAACCCGTTGAACCAAGT
TGAATTTGATGATACATCAGAAATGGTTGTACCTCTCCTAGTTCCAATGT
CTGCGATCATATTT
Run BLAST on NCBI

protein sequence of TCONS_00062522-protein

>TCONS_00062522-protein ID=TCONS_00062522-protein|Name=TCONS_00062522-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
NMIADIGTRRGTTISDVSSNSTWFNGFDWMHDPEDTFPVKSVNQVKLTNE
ELKAAKKEQILPIVDPITIPPSIHFSSINQRFDFSEYLVNPMKYGWTKSL
AIMSAIFQFVSNFACRKKRLSRIALQPCEKSTFQYFFTKATEEVQSFSLK
KKYE
Run BLAST on NCBI

transcript from alignment at scaffold_368:26587..27050

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062522 ID=TCONS_00062522|Name=TCONS_00062522|organism=Clytia hemisphaerica|type=transcript|length=464bp|location=Sequence derived from alignment at scaffold_368:26587..27050 (Clytia hemisphaerica)
AAATATGATCGCAGACATTGGAACTAGGAGAGGTACAACCATTTCTGATG
TATCATCAAATTCAACTTGGTTCAACGGGTTTGATTGGATGCATGATCCT
GAGGATACCTTCCCCGTGAAATCTGTCAATCAAGTCAAACTCACAAATGA
AGAACTCAAAGCTGCAAAGAAAGAACAGATTCTCCCAATTGTTGATCCAA
TCACTATACCTCCATCAATCCACTTTTCATCCATAAATCAACGGTTCGAC
TTCTCAGAGTACCTTGTGAACCCAATGAAGTATGGTTGGACAAAATCATT
GGCAATCATGAGCGCGATATTTCAATTTGTATCAAACTTTGCATGTCGCA
AGAAAAGATTGTCACGTATCGCTCTTCAACCATgtgaaaaatcaactttt
caatACTTCTTCACTAAAGCAACAGAGGAAGTACAATCGTTCTCATTGAA
AAAGAAGTATGAAC

Coding sequence (CDS) from alignment at scaffold_368:26587..27050

>TCONS_00062522 ID=TCONS_00062522|Name=TCONS_00062522|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at scaffold_368:26587..27050 (Clytia hemisphaerica)
AATATGATCGCAGACATTGGAACTAGGAGAGGTACAACCATTTCTGATGT
ATCATCAAATTCAACTTGGTTCAACGGGTTTGATTGGATGCATGATCCTG
AGGATACCTTCCCCGTGAAATCTGTCAATCAAGTCAAACTCACAAATGAA
GAACTCAAAGCTGCAAAGAAAGAACAGATTCTCCCAATTGTTGATCCAAT
CACTATACCTCCATCAATCCACTTTTCATCCATAAATCAACGGTTCGACT
TCTCAGAGTACCTTGTGAACCCAATGAAGTATGGTTGGACAAAATCATTG
GCAATCATGAGCGCGATATTTCAATTTGTATCAAACTTTGCATGTCGCAA
GAAAAGATTGTCACGTATCGCTCTTCAACCATgtgaaaaatcaacttttc
aatACTTCTTCACTAAAGCAACAGAGGAAGTACAATCGTTCTCATTGAAA
AAGAAGTATGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039182XLOC_039182Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062522-proteinTCONS_00062522-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062522-exon-scaffold_368-1491911889:26587..27050TCONS_00062522-exon-scaffold_368-1491911889:26587..27050Clytia hemisphaericaexon
TCONS_00062522-exon-scaffold_368-1510915933:26587..27050TCONS_00062522-exon-scaffold_368-1510915933:26587..27050Clytia hemisphaericaexon
TCONS_00062522-exon-scaffold_368-1575043694:26587..27050TCONS_00062522-exon-scaffold_368-1575043694:26587..27050Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_368supercontigscaffold_368:26587..27050 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.83477	0.678361	0.787642	1.07882	3.31074	1.64599	2.06171	2.61075	1.35266	1.74266	1.40956	0.926587	1.38795	0.28828	0.711015	1.18693	0.626659	0.428204	0.591586	1.2381	1.21066	0.984192	0.159522	0.870171	1.72608	0.266629	0.953863	0.610793	0.308843	0.471994
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062522 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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