|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062512 ID=TCONS_00062512|Name=TCONS_00062512|organism=Clytia hemisphaerica|type=transcript|length=2646bp
ATTATGCATTTTCGAACCCGTGATGCTACATAAATCATGCAGAAATTTAA
TCATTGTTTGCATAAATTTAtgcacatttttctattgttttcataaattt
ataaaaaaaaatttgctacaTGTTTTAAAAATACATTACAGATCAGAGTA
AACCATGCGGCTATTCAGATTTTCTTGAATGGGACTAGAATCGAGTATTC
AGGGGTGACTCAACACTCTTAACGTTGACTATATCGCTTGAAAAAAGAGC
AATGTTAATTTAGAGTAGATTTGGAGAGTCAGGAGAAAACAACAACAGAA
TCAAAATCAAGAACTTATACAGTAAAAAGCACAACTGAACAACAAAACAG
TCGCATAACAAATactgaaaacaacaaaaacgacAAGAGCCACTATCACA
AAATCATGGCTTTCTATTTCGGAGATTCAATTCACCAATTTGTCAACATC
AAAGTCAAAGAACGTCATGATTCCATCTTTGATCAAATCCCACGTATCTT
TGTCTGCAAATTATTCATCTTATCCGCCATGATTATGTCTATCACATGGT
TTAACGACGAAGCTAGATGTATCCCACCTAAAGGTGACGCGAACAGACTA
CCAGCGTATTTCATACATAGGGCATGTTGGCTGAAAGGGATTTACGTGTA
CCCGCAACTACATCAGGAAACAGAATATGACGTATCTTATTACGGCGTAC
CGACAGCACTGGAAAAAGACGGCGTTTTGGAAGATAAAGAAGATGAACTC
TGCAAAGTAGGTTGGCGTAACGAAAATTGTAAACCAATGGAACGAGAATA
TTTCCATCAATACAAATGGATTCCATTTTACGTGGCTTTCTTAGCATTCT
TGTTCTTCTATCCGTATATGATCTTCAAGATTTGCAACAGTGATTTCATC
AACCTTAAAAACAACCTTGGAAACCATGAGGTGTCAGCTGATCAAATCGT
AGATGCATTTTTCAACAACACAGACTCAGTTCGTAAAAGGCGTAACCATC
TAAGAATCCTTGGTAACTACATTGTCAAACTACTGTATTTCTTTAACGGA
GTTATCGGCTTTTTCATCATTGATCATTTGACACATAACCGTTTCAACAA
TCTTGGTAACGAATGGACCTCATATTCCAAGGAAATCAGATTTGATGTGG
ACGAGAGTCTCCTGGCAACACCTGCTAACAAGTTCTTACCAGTGTTTGGA
ATCTGCGAGCTGATGGATGTCCGAGCTGACTCGACCCATTCACGTGCTGA
TAAGGTTCGCGTTGTCTGTGAAATATCAACACAAATCATGTACCAGTACT
GTTTTATCCTATACTGGTTCGTCCTCATTTTCTCAATGTGTTGTTCAGCT
CTTGGTATCATCATCTACATTTGCAAACATTTGATCCTCTTGTTTGGACG
CACCAAGAAAGGACCAGGTCACATCCACAATCAATACTTATCTTTACGAC
AAGTTGAATACTTGGATATCATTCGTAGACGACATCTACCCATGTACACA
ACCATCCATAAAATGCTGNAGAAATATCTTTTTTGTAGTTGAGTATTTTA
TGACTATTTTAGAGAGCTTCTAGAAGTCCTATTTTGTACATTTCTCTACC
AAATCCAAGATAGGACCAACTCTCTTAGGGATTGGATATAGCTCATTCTT
TCTTGAGCTAAAATgttaaacaaaatttttaagaCCTTTGAAATAATAAT
AAACAATTTTTAGATGTAATTATAACaacaattgtttttttattgggAAT
TATTGTGTAgggactaaaaagaaaaatatctttataaatttttattgttt
ttgataCCTATAATATGTAAATTATGACTAGGTATGATAATCAGAGTATT
TAAGTAAAATCTTTTATAGGGACTGAATTTGTAATCACAATTGTACATTT
CTAGGGATAGCCGAAAATATTAGGAATTATAGTGACaagaaaaaatgtga
aaaaattgaaatctgcTTGTTGTTGTTATTAAAGGGGATTGACATAACgc
accaaaaattttgattcagGAAGTATAGTTTGTTAGAAATATTTTTCGAT
ATTATTTTTCCTGCTTGAAATAAACCAATAACAAAagggaaaaaaatatt
attcaacaaaaaataaatatatgatGATTCATACATAGAAGGAAAGCATC
atcagaaaaagtttgaaaaattaattaggcTCCTTTTTGTTAAGACTGAA
TAATTCAGTCGAGTCCATTGTTTGAGTAGATAATCCCAATATCATTTTTT
GCATAGCTGAGTAGATTTGTCTAAATTCATCCCATGATTGATAGTTAGGT
CACAAAGAAGTtatacgtcatcaaaaattcATCAACATGAAAATTTCGTG
ACGTCAACATGCTTCATGGAGAACATGCAGTGTTTTACTCATTTTGTTCT
GCTCTTTTGGAAGAGTGAAAAGTCTGCCATGTTACCATGATGAAATAATG
ATGTAATggtaaaaatgacgtcatttaacaACGAACGaaacaaaataaga
atatgtaaaaacaaaataatggtAGACCTCgtgtctttctttttttatct
gTTCGGTAAATTTCAGACAGCATGGTTCGGTATTTTAGTCCATCATTATT
TCTTCAACTCGATTGGTATCGTCTAAATGGGTCATACTCATCATCt Run BLAST on NCBI protein sequence of TCONS_00062512-protein >TCONS_00062512-protein ID=TCONS_00062512-protein|Name=TCONS_00062512-protein|organism=Clytia hemisphaerica|type=polypeptide|length=378bp
MAFYFGDSIHQFVNIKVKERHDSIFDQIPRIFVCKLFILSAMIMSITWFN
DEARCIPPKGDANRLPAYFIHRACWLKGIYVYPQLHQETEYDVSYYGVPT
ALEKDGVLEDKEDELCKVGWRNENCKPMEREYFHQYKWIPFYVAFLAFLF
FYPYMIFKICNSDFINLKNNLGNHEVSADQIVDAFFNNTDSVRKRRNHLR
ILGNYIVKLLYFFNGVIGFFIIDHLTHNRFNNLGNEWTSYSKEIRFDVDE
SLLATPANKFLPVFGICELMDVRADSTHSRADKVRVVCEISTQIMYQYCF
ILYWFVLIFSMCCSALGIIIYICKHLILLFGRTKKGPGHIHNQYLSLRQV
EYLDIIRRRHLPMYTTIHKMLXKYLFCS Run BLAST on NCBI transcript from alignment at scaffold_367:107637..110575- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062512 ID=TCONS_00062512|Name=TCONS_00062512|organism=Clytia hemisphaerica|type=transcript|length=2939bp|location=Sequence derived from alignment at scaffold_367:107637..110575- (Clytia hemisphaerica)
ATTATGCATTTTCGAACCCGTGATGCTACATAAATCATGCAGAAATTTAA
TCATTGTTTGCATAAATTTATGCACATTTTTCTATTGTTTTCATAAATTT
ATAAAAAAAAATTTGCTACATGTTTTAAAAATACATTACAGATCAGAGTA
AACCATGCGGCTATTCAGATTTTCTTGAATGGGACTAGAATCGAGTATTC
AGGGGTGACTCAACACTCTTAACGTTGACTATATCGCTTGAAAAAAGAGC
AATGTTAATTTAGAGTAGATTTGGAGAGTCAGGAGAAAACAACAACAGAA
TCAAAATCAAGAACTTATACAGTAAAAAGCACAACTGAACAACAAAACAG
TCGCATAACAAATACTGAAAACAACAAAAACGACAAGAGCCACTATCACA
AAATCATGGCTTTCTATTTCGGAGATTCAATTCACCAATTTGTCAACATC
AAAGTCAAAGAACGTCATGATTCCATCTTTGATCAAATCCCACGTATCTT
TGTCTGCAAATTATTCATCTTATCCGCCATGATTATGTCTATCACATGGT
TTAACGACGAAGCTAGATGTATCCCACCTAAAGGTGACGCGAACAGACTA
CCAGCGTATTTCATACATAGGGCATGTTGGCTGAAAGGGATTTACGTGTA
CCCGCAACTACATCAGGAAACAGAATATGACGTATCTTATTACGGCGTAC
CGACAGCACTGGAAAAAGACGGCGTTTTGGAAGATAAAGAAGATGAACTC
TGCAAAGTAGGTTGGCGTAACGAAAATTGTAAACCAATGGAACGAGAATA
TTTCCATCAATACAAATGGATTCCATTTTACGTGGCTTTCTTAGCATTCT
TGTTCTTCTATCCGTATATGATCTTCAAGATTTGCAACAGTGATTTCATC
AACCTTAAAAACAACCTTGGAAACCATGAGGTAATGATTAGTTTGATTCT
AAAAAATTATTATTCTCAGCATTTCTTTACCTTTCTTTACACTAACAAAG
TTTTTATTTGATGGTGAAACAAACACCTTAAGATAAATTCTTTACTAAAA
GATTCAAGTGTTGCCACAGCTCAATATTTTACACCTTTGATAAACTAGTT
CCAAAGCCAGATTTCAGGGATGTGTTGGAATTGAATCTCACTAAATTACA
TCAACAATTCCAACCAATAAATCACCAAAGAATTTATCAAACTAACAAAG
ACTTCTTTTCTATCATTTCACAGGTGTCAGCTGATCAAATCGTAGATGCA
TTTTTCAACAACACAGACTCAGTTCGTAAAAGGCGTAACCATCTAAGAAT
CCTTGGTAACTACATTGTCAAACTACTGTATTTCTTTAACGGAGTTATCG
GCTTTTTCATCATTGATCATTTGACACATAACCGTTTCAACAATCTTGGT
AACGAATGGACCTCATATTCCAAGGAAATCAGATTTGATGTGGACGAGAG
TCTCCTGGCAACACCTGCTAACAAGTTCTTACCAGTGTTTGGAATCTGCG
AGCTGATGGATGTCCGAGCTGACTCGACCCATTCACGTGCTGATAAGGTT
CGCGTTGTCTGTGAAATATCAACACAAATCATGTACCAGTACTGTTTTAT
CCTATACTGGTTCGTCCTCATTTTCTCAATGTGTTGTTCAGCTCTTGGTA
TCATCATCTACATTTGCAAACATTTGATCCTCTTGTTTGGACGCACCAAG
AAAGGACCAGGTCACATCCACAATCAATACTTATCTTTACGACAAGTTGA
ATACTTGGATATCATTCGTAGACGACATCTACCCATGTACACAACCATCC
ATAAAATGCTGNAGAAATATCTTTTTTGTAGTTGAGTATTTTATGACTAT
TTTAGAGAGCTTCTAGAAGTCCTATTTTGTACATTTCTCTACCAAATCCA
AGATAGGACCAACTCTCTTAGGGATTGGATATAGCTCATTCTTTCTTGAG
CTAAAATGTTAAACAAAATTTTTAAGACCTTTGAAATAATAATAAACAAT
TTTTAGATGTAATTATAACAACAATTGTTTTTTTATTGGGAATTATTGTG
TAGGGACTAAAAAGAAAAATATCTTTATAAATTTTTATTGTTTTTGATAC
CTATAATATGTAAATTATGACTAGGTATGATAATCAGAGTATTTAAGTAA
AATCTTTTATAGGGACTGAATTTGTAATCACAATTGTACATTTCTAGGGA
TAGCCGAAAATATTAGGAATTATAGTGACAAGAAAAAATGTGAAAAAATT
GAAATCTGCTTGTTGTTGTTATTAAAGGGGATTGACATAACGCACCAAAA
ATTTTGATTCAGGAAGTATAGTTTGTTAGAAATATTTTTCGATATTATTT
TTCCTGCTTGAAATAAACCAATAACAAAAGGGAAAAAAATATTATTCAAC
AAAAAATAAATATATGATGATTCATACATAGAAGGAAAGCATCATCAGAA
AAAGTTTGAAAAATTAATTAGGCTCCTTTTTGTTAAGACTGAATAATTCA
GTCGAGTCCATTGTTTGAGTAGATAATCCCAATATCATTTTTTGCATAGC
TGAGTAGATTTGTCTAAATTCATCCCATGATTGATAGTTAGGTCACAAAG
AAGTTATACGTCATCAAAAATTCATCAACATGAAAATTTCGTGACGTCAA
CATGCTTCATGGAGAACATGCAGTGTTTTACTCATTTTGTTCTGCTCTTT
TGGAAGAGTGAAAAGTCTGCCATGTTACCATGATGAAATAATGATGTAAT
GGTAAAAATGACGTCATTTAACAACGAACGAAACAAAATAAGAATATGTA
AAAACAAAATAATGGTAGACCTCGTGTCTTTCTTTTTTTATCTGTTCGGT
AAATTTCAGACAGCATGGTTCGGTATTTTAGTCCATCATTATTTCTTCAA
CTCGATTGGTATCGTCTAAATGGGTCATACTCATCATCT Coding sequence (CDS) from alignment at scaffold_367:107637..110575- >TCONS_00062512 ID=TCONS_00062512|Name=TCONS_00062512|organism=Clytia hemisphaerica|type=CDS|length=2274bp|location=Sequence derived from alignment at scaffold_367:107637..110575- (Clytia hemisphaerica)
GTGTCAGCTGATCAAATCGTAGATGCATTTTTCAACAACACAGACTCAGT
TCGTAAAAGGCGTAACCATCTAAGAATCCTTGGTAACTACATTGTCAAAC
TACTGTATTTCTTTAACGGAGTTATCGGCTTTTTCATCATTGATCATTTG
ACACATAACCGTTTCAACAATCTTGGTAACGAATGGACCTCATATTCCAA
GGAAATCAGATTTGATGTGGACGAGAGTCTCCTGGCAACACCTGCTAACA
AGTTCTTACCAGTGTTTGGAATCTGCGAGCTGATGGATGTCCGAGCTGAC
TCGACCCATTCACGTGCTGATAAGGTTCGCGTTGTCTGTGAAATATCAAC
ACAAATCATGTACCAGTACTGTTTTATCCTATACTGGTTCGTCCTCATTT
TCTCAATGTGTTGTTCAGCTCTTGGTATCATCATCTACATTTGCAAACAT
TTGATCCTCTTGTTTGGACGCACCAAGAAAGGACCAGGTCACATCCACAA
TCAATACTTATCTTTACGACAAGTTGAATACTTGGATATCATTCGTAGAC
GACATCTACCCATGTACACAACCATCCATAAAATGCTGNAGAAATATCTT
TTTTGTAGTTGAATGGCTTTCTATTTCGGAGATTCAATTCACCAATTTGT
CAACATCAAAGTCAAAGAACGTCATGATTCCATCTTTGATCAAATCCCAC
GTATCTTTGTCTGCAAATTATTCATCTTATCCGCCATGATTATGTCTATC
ACATGGTTTAACGACGAAGCTAGATGTATCCCACCTAAAGGTGACGCGAA
CAGACTACCAGCGTATTTCATACATAGGGCATGTTGGCTGAAAGGGATTT
ACGTGTACCCGCAACTACATCAGGAAACAGAATATGACGTATCTTATTAC
GGCGTACCGACAGCACTGGAAAAAGACGGCGTTTTGGAAGATAAAGAAGA
TGAACTCTGCAAAGTAGGTTGGCGTAACGAAAATTGTAAACCAATGGAAC
GAGAATATTTCCATCAATACAAATGGATTCCATTTTACGTGGCTTTCTTA
GCATTCTTGTTCTTCTATCCGTATATGATCTTCAAGATTTGCAACAGTGA
TTTCATCAACCTTAAAAACAACCTTGGAAACCATGAGGTGTCAGCTGATC
AAATCGTAGATGCATTTTTCAACAACACAGACTCAGTTCGTAAAAGGCGT
AACCATCTAAGAATCCTTGGTAACTACATTGTCAAACTACTGTATTTCTT
TAACGGAGTTATCGGCTTTTTCATCATTGATCATTTGACACATAACCGTT
TCAACAATCTTGGTAACGAATGGACCTCATATTCCAAGGAAATCAGATTT
GATGTGGACGAGAGTCTCCTGGCAACACCTGCTAACAAGTTCTTACCAGT
GTTTGGAATCTGCGAGCTGATGGATGTCCGAGCTGACTCGACCCATTCAC
GTGCTGATAAGGTTCGCGTTGTCTGTGAAATATCAACACAAATCATGTAC
CAGTACTGTTTTATCCTATACTGGTTCGTCCTCATTTTCTCAATGTGTTG
TTCAGCTCTTGGTATCATCATCTACATTTGCAAACATTTGATCCTCTTGT
TTGGACGCACCAAGAAAGGACCAGGTCACATCCACAATCAATACTTATCT
TTACGACAAGTTGAATACTTGGATATCATTCGTAGACGACATCTACCCAT
GTACACAACCATCCATAAAATGCTGNAGAAATATCTTTTTTGTAGTTGAA
TGGCTTTCTATTTCGGAGATTCAATTCACCAATTTGTCAACATCAAAGTC
AAAGAACGTCATGATTCCATCTTTGATCAAATCCCACGTATCTTTGTCTG
CAAATTATTCATCTTATCCGCCATGATTATGTCTATCACATGGTTTAACG
ACGAAGCTAGATGTATCCCACCTAAAGGTGACGCGAACAGACTACCAGCG
TATTTCATACATAGGGCATGTTGGCTGAAAGGGATTTACGTGTACCCGCA
ACTACATCAGGAAACAGAATATGACGTATCTTATTACGGCGTACCGACAG
CACTGGAAAAAGACGGCGTTTTGGAAGATAAAGAAGATGAACTCTGCAAA
GTAGGTTGGCGTAACGAAAATTGTAAACCAATGGAACGAGAATATTTCCA
TCAATACAAATGGATTCCATTTTACGTGGCTTTCTTAGCATTCTTGTTCT
TCTATCCGTATATGATCTTCAAGATTTGCAACAGTGATTTCATCAACCTT
AAAAACAACCTTGGAAACCATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062512-exon-scaffold_367-1575043694:109646..110575 | TCONS_00062512-exon-scaffold_367-1575043694:109646..110575 | Clytia hemisphaerica | exon |
| TCONS_00062512-exon-scaffold_367-1575043694:107637..109352 | TCONS_00062512-exon-scaffold_367-1575043694:107637..109352 | Clytia hemisphaerica | exon |
| TCONS_00062512-exon-scaffold_367-1510915933:109646..110575 | TCONS_00062512-exon-scaffold_367-1510915933:109646..110575 | Clytia hemisphaerica | exon |
| TCONS_00062512-exon-scaffold_367-1510915933:107637..109352 | TCONS_00062512-exon-scaffold_367-1510915933:107637..109352 | Clytia hemisphaerica | exon |
| TCONS_00062512-exon-scaffold_367-1491911889:109646..110575 | TCONS_00062512-exon-scaffold_367-1491911889:109646..110575 | Clytia hemisphaerica | exon |
| TCONS_00062512-exon-scaffold_367-1491911889:107637..109352 | TCONS_00062512-exon-scaffold_367-1491911889:107637..109352 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_367 | supercontig | scaffold_367:107637..110575 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000990 | Innexin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005921 | gap junction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005921 |
gap junction |
Blast
The following BLAST results are available for this feature:
|
