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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062507 ID=TCONS_00062507|Name=TCONS_00062507|organism=Clytia hemisphaerica|type=transcript|length=2708bp
CGCAGGgtaatatataaaaaaagaagaatattgTACACAGACGTATTAAT
TAGTCAATAAAGTGAGAAGAGAAGGAAAAAATCGAAAGGACTAGATTGAT
TATCCGCCGTCGTTTATCAGACTCAAAGCAGACTTTTCGTGGACGCATCA
CAAGTCAAAATCCATTCACACTTCAGCCGGTGAAATTGGAAATTAGATTG
CGGTATTTTCAAGGCATTGAGTCATTTCTAGACCTTGATATCTTCGTAAG
AATCAAGCTGTTTGACATATTCGATAATCGAACGTTTAGTTTACTAATTC
TACGGACAGTCATAAACTTTACATTGGATCAATATGACTTTCTACGTCGG
AGATTCACTAAAAGCTTTATTAAGTATCAAACTAAAAACACGCGACGATC
ATTTATCCGATCAGGTTTCACGAATCTTAGTCGTCAAAGTCCTCGTCGTT
GTCAGCATGGGTTTAAGTTTAATTTGGTTCCACAGTGAGACACGCTGTAT
ACCTCCCGTCAAAAGCAAGGGTAAAGAACTACCGGCGCAATTCATACATC
GTGGTTGTTGGGCCAAAGGTTTTTACATCTATCCACAGTTAGGTGAACAC
ATGCGTAAGAGCGCTTATTACGGAATCCCGTTCGAACTGAAATGGAACGG
CTACCGACCGGACGACCCGTCACAATTATGTCGTGTCAACGAATATGGGG
GTAGTACAGACGAAGAAAATTGTTTTGCGATGGAAAGAGAATATTTCAAT
CAATATCAATGGATGCCAATGTCAATGTTGTTGCTATCCTTTGTCTTTTA
TTTCCCCTATATCGTCTTTCGTATGGTCAACACTGATCTCATCAATCTTC
GATCGAACCTAAAAAACCTACAGATGGAGATGAATCAATTGGCTTATCTT
TATTTCTCACAAGAGATAAATTCCATACGCCGAAACCGCTTGAGAGTGAT
CGCAAATTATGGCGTTAAATGTCTCTACATATTCAGCAACATTCTCGCCA
TGTCATTTTTACATAGGCTACTTAACGACCGTTTCTATACATATGGTCTC
GATTGGTTATCATGGTCTAAAGGCAACTCTACCGAAAGACTATACtttga
aaaaagagaaacaccgaGTCCTGGGAATCAACTTTTACCGATCTTCGGCA
TGTGCGATTTACACGACGTCCGTCTCGATTTAACGACATCGTATACCGAC
AAAATGACCGTCGTTTGTGAAATGGCGTCACACGCCGTCTATCAACACAC
GCTCGTTATAATATGGTTTCTACTAGTCTTCTCAAACGCTATGTCAATCG
TGGGTTTGATTTATTATCTCTGTAATCATTTGCGTATGTTACAAAGATCC
AAAACAGCGAAAACGGATTGCTTATTATTTAGGAGATACATTACTTTACG
TGAAATGGAATATCTTGAATGTATCAAAAACATTGACTTGGCTGTTTATG
CAAAAGTCAATAAAATATTGGATGATAATCTACTGAACAATTCTGACGAA
ACGCCCAAGATTCAGGGCGGGCAACCAATTCAAGTTTTAACCATGTAGTT
AGAGTACGTAGTGGCACTCTACTTTTGATAATTCCGTCAATAGTTTTCTc
gagcattgagtttaaagtttaaagggGCTAAAGTAAAAACTTTAGGATAG
GAAATGAAGCTACTTAATTATCCATCCGGAATGACCGCACGTGGTTTTta
gccggattgaaagtaaaacctaTCGCTAGAATTAGATACATtcctcgaaa
acaaagaaaccactagatacaatccgtcgtcatgatatTGTTGCGCGTTC
TTGAtggggaaataagtagcttcacttttttgcctgggaaaggttagaga
ttcaaTGTTCTCGAGCACTgacacaaattttttttccgtgaacggacgga
agtatcttcgacggtcagaagtatcatcttttgacggtcagaagtatcat
ttttaatttttcctatccgtcattccgtggttcagggggtattgggtcat
TACCAATCaattaggtagggtcagggttgctagtaacggcttgtcactgt
gccgggtgcatactcggcgccttgggccccgcagggttgctagtaacggc
tcaaATTTCAGCcagtttaaaaaaggggtacttttacccatattataata
acattacccccgtcttttgctaGTTTGGTaaaatatgttatgaattgcgt
gattttgctgtgcggcgatggctcaacggataaaGCGCTGGCTTCCgcat
ctgaaggtctttctttggtggtggttcgaatcccactcggtgcgaaaatt
agacaggtcgaaattgatggacaaatgattgacaggtatgaaaaatCAGT
CAGAAATGAGAAACTAAGTCTCAGAAAGTAGAAACAGATAaggtgaaaga
taggaaagggaaaatgggccgtcaaaagatgatacttctgaccgtcgaag
atacttccgtccgttcacggaaaaaaatttgcagCACTGACAGTGGATGA
GTTGAGTTGGAAAATAGAATGCGAAACCACAGTTCACACAGCGAAGAGAT
GTTGTAGATAATATTTTAAGATTGTTGCAGCAAACTTATTTTTAATGTAA
ATTGGTACTTATTTAttgatcaaaatatttatttttatagatAAATTAAT
AATTTTATACGAAAAGAAATGTATTCATTGTTCTTGTCTTCTAAAATATT
GTTGTCAC Run BLAST on NCBI protein sequence of TCONS_00062507-protein >TCONS_00062507-protein ID=TCONS_00062507-protein|Name=TCONS_00062507-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
MTFYVGDSLKALLSIKLKTRDDHLSDQVSRILVVKVLVVVSMGLSLIWFH
SETRCIPPVKSKGKELPAQFIHRGCWAKGFYIYPQLGEHMRKSAYYGIPF
ELKWNGYRPDDPSQLCRVNEYGGSTDEENCFAMEREYFNQYQWMPMSMLL
LSFVFYFPYIVFRMVNTDLINLRSNLKNLQMEMNQLAYLYFSQEINSIRR
NRLRVIANYGVKCLYIFSNILAMSFLHRLLNDRFYTYGLDWLSWSKGNST
ERLYFEKRETPSPGNQLLPIFGMCDLHDVRLDLTTSYTDKMTVVCEMASH
AVYQHTLVIIWFLLVFSNAMSIVGLIYYLCNHLRMLQRSKTAKTDCLLFR
RYITLREMEYLECIKNIDLAVYAKVNKILDDNLLNNSDETPKIQGGQPIQ
VLTM Run BLAST on NCBI transcript from alignment at scaffold_367:116919..121809+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062507 ID=TCONS_00062507|Name=TCONS_00062507|organism=Clytia hemisphaerica|type=transcript|length=4891bp|location=Sequence derived from alignment at scaffold_367:116919..121809+ (Clytia hemisphaerica)
CGCAGGgtaatatataaaaaaagaagaatattgTACACAGACGTATTAAT
TAGTCAATAAAGTGAGAAGAGAAGGAAAAAATCGAAAGGACTAGATTGAT
TATCCGCCGTCGTTTATCAGACTCAAAGCAGACTTTTCGTGGACGCATCA
CAAGTCAAAATCCATTCACACTTCAGCCGGTGAAATTGGAAATTAGATTG
CGGTATTTTCAAGGCATTGAGTCATTTCTAGACCTTGATATCTTCGTAAG
AATCAAGCTGTTTGACATATTCGATAATCGAACGTTTAGTTTACTAATTC
TACGGACAGTCATAAACTTTACATTGGATCAATATGACTTTCTACGTCGG
AGATTCACTAAAAGCTTTATTAAGTATCAAACTAAAAACACGCGACGATC
ATTTATCCGATCAGGTTTCACGAATCTTAGTCGTCAAAGTCCTCGTCGTT
GTCAGCATGGGTTTAAGTTTAATTTGGTTCCACAGTGAGACACGCTGTAT
ACCTCCCGTCAAAAGCAAGGGTAAAGAACTACCGGCGCAATTCATACATC
GTGGTTGTTGGGCCAAAGGTTTTTACATCTATCCACAGTTAGGTGAACAC
ATGCGTAAGAGCGCTTATTACGGAATCCCGTTCGAACTGAAATGGAACGG
CTACCGACCGGACGACCCGTCACAATTATGTCGTGTCAACGAATATGGGG
GTAGTACAGACGAAGAAAATTGTTTTGCGATGGAAAGAGAATATTTCAAT
CAATATCAATGGATGCCAATGTCAATGTTGTTGCTATCCTTTGTCTTTTA
TTTCCCCTATATCGTCTTTCGTATGGTCAACACTGATCTCATCAATCTTC
GATCGAACCTAAAAAACCTACAGgtgagttttgttttgtttttgtaccTT
TCACCGCCCGTAAAATTACGGAAATAAAAAATCGACTCCCTTAAAGagtc
ataaatttttgaaattttgactaaagtttaaagattttggcttaaatttt
gaggaaaactcCCCTTTTTCACAAACGCGGTGGGATTTTTTATGCCGTTT
GGGGTataaataacggaccaaaactcgatggggattgatatttccatatt
ttctaTGGCTGGgatttgaattattttgtttgcaagtcagaaaattcagt
ggggaattgaaaaatatcataacATTTTACAGTGagaatttgtttatttg
attattttcaataggGGCAAAAATtcgaggataattttccaccaatgaag
atttttccagtggaaaggggtcccagtgggtctctGACAGGCCTGGCCGA
ACAACCCCAAAAGTGAGGaagctgaaggctcaaaatgaggaatttgacta
ggaatttgagaaaaaaaatctcatttgctcaaatgtggggaggctgaagt
ctccccgcttccgtcGAGcctttgtgagaagggggtgtaggaaatagtct
ctctaagggtaaccCCTGTCATCTCGCAAGCCTAGTACCCCCCTGGAGat
tcaatttgctttttaaattttaatggtttttgtacccaaAGGAGGAGCAA
TATTTCTACCAGCATTTTTACAgccttttaaaaaagttttgactAAGGTT
ATCGCTGCGAATAATTAAGCGTGAATCAAATGTTAAAGTTTGTATATTTC
AAAGATAGTGAAATTCGTATTACCATGTTGTTACCCACGGTAGGATTCAG
GGTTTTAGGGAAAGACCTAAGTGGCCCCCACCCACTACCCCGTAAACTTT
TgtttggtttaaaatttttgttatttggttcTTCATGTTTAATGAATGGT
GGAACCTATGtgtcatattttatttttacaaaagtaTCATCACATTTTGA
GGTTTAGGCTCCCCAACAAAcgtaaaagaaatattttatttatttacttt
atgAAAATATTGGTGTGTTAAAAGGTTTTATTCCCTGTTTTATTGTATCA
ATTCAAAGATAATGGCCAATATGAAAGGTTTTCTTCTGTATGTAATCTTG
TAACCGCGAAAACCGTTCAAAAAGCCGAAAGAAATCTATGTGTCAATGAA
AATGGATTTTTATTTCATATCAGGgtttttctatatttcaaattttggaa
ccttcctttcttttggaaaaaaaactaGAATATCTTGAGAAAAATCAGGT
CTGACTGGAATATAAAAACTTAGAGCTTTCTGTgggtttctttttcattt
ttttcatactttttgtattttatcacgttttttcatcttttgaacCTTGG
ACTTGTTGTTCCTGTTTAGAAAAAAAGGGCTGACCTTAGCAAAAAGCCCT
ATTTTGATTAGGTGTTTAAAAAGCATTTAAGATTATTTCCCTTCTATGTC
CCGTATGGGACCAAATAATGACATCATGGTCTTCTTTTATTGGTCGCACT
CCTCTTTGTGATACACGCATCTGATATGGTTTCGCTTACTCATACCCTTC
TGGTGAAatggaaaatattcttcatCTCAAAACGGATGTTTATAACTTTA
GTTTCCCATCCCTGATTTACATTTTGTTGTCACGGAAAAAAATTATTGCA
CGTAGGTTTTATTAATAGATAGTCCCATGGAAAACTTATTGTAAGATTAC
GTTTTCTGAATTCTTTTCTACCCTGTCTCAAATGCTAGGTTTTCTTCCAt
gaattttcagccaaattttctaGTTTTAAGCGGGTCCTACTGATTCATGG
CATCAGGTATTataaaaatgtcaaatgttATTTCCAATTTTGTAATGTCA
ATTTGGTTTTTGGTTTTTCCATGAAAAAAGACTGTAAGCTAGTACATTGG
CTATTAGaacgggatgagctggagtttttacaagatacttcactaattgg
tcatttgaagtgatagagatgacgcgttctttagaaaaagtaacaaaatt
gttttattactggttaacgaccaaccaaatcaaacaagagcttgtaaaaa
ctccagcttgtcccattagaacacccccttctcacagacccggtgggagc
ccttcccactggaaaaattaacCAATTAATGATTCGTTTTTCTTTATCTG
TTTTAGATGGAGATGAATCAATTGGCTTATCTTTATTTCTCACAAGAGAT
AAATTCCATACGCCGAAACCGCTTGAGAGTGATCGCAAATTATGGCGTTA
AATGTCTCTACATATTCAGCAACATTCTCGCCATGTCATTTTTACATAGG
CTACTTAACGACCGTTTCTATACATATGGTCTCGATTGGTTATCATGGTC
TAAAGGCAACTCTACCGAAAGACTATACtttgaaaaaagagaaacaccga
GTCCTGGGAATCAACTTTTACCGATCTTCGGCATGTGCGATTTACACGAC
GTCCGTCTCGATTTAACGACATCGTATACCGACAAAATGACCGTCGTTTG
TGAAATGGCGTCACACGCCGTCTATCAACACACGCTCGTTATAATATGGT
TTCTACTAGTCTTCTCAAACGCTATGTCAATCGTGGGTTTGATTTATTAT
CTCTGTAATCATTTGCGTATGTTACAAAGATCCAAAACAGCGAAAACGGA
TTGCTTATTATTTAGGAGATACATTACTTTACGTGAAATGGAATATCTTG
AATGTATCAAAAACATTGACTTGGCTGTTTATGCAAAAGTCAATAAAATA
TTGGATGATAATCTACTGAACAATTCTGACGAAACGCCCAAGATTCAGGG
CGGGCAACCAATTCAAGTTTTAACCATGTAGTTAGAGTACGTAGTGGCAC
TCTACTTTTGATAATTCCGTCAATAGTTTTCTcgagcattgagtttaaag
tttaaagggGCTAAAGTAAAAACTTTAGGATAGGAAATGAAGCTACTTAA
TTATCCATCCGGAATGACCGCACGTGGTTTTtagccggattgaaagtaaa
acctaTCGCTAGAATTAGATACATtcctcgaaaacaaagaaaccactaga
tacaatccgtcgtcatgatatTGTTGCGCGTTCTTGAtggggaaataagt
agcttcacttttttgcctgggaaaggttagagattcaaTGTTCTCGAGCA
CTgacacaaattttttttccgtgaacggacggaagtatcttcgacggtca
gaagtatcatcttttgacggtcagaagtatcatttttaatttttcctatc
cgtcattccgtggttcagggggtattgggtcatTACCAATCaattaggta
gggtcagggttgctagtaacggcttgtcactgtgccgggtgcatactcgg
cgccttgggccccgcagggttgctagtaacggctcaaATTTCAGCcagtt
taaaaaaggggtacttttacccatattataataacattacccccgtcttt
tgctaGTTTGGTaaaatatgttatgaattgcgtgattttgctgtgcggcg
atggctcaacggataaaGCGCTGGCTTCCgcatctgaaggtctttctttg
gtggtggttcgaatcccactcggtgcgaaaattagacaggtcgaaattga
tggacaaatgattgacaggtatgaaaaatCAGTCAGAAATGAGAAACTAA
GTCTCAGAAAGTAGAAACAGATAaggtgaaagataggaaagggaaaatgg
gccgtcaaaagatgatacttctgaccgtcgaagatacttccgtccgttca
cggaaaaaaatttgcagCACTGACAGTGGATGAGTTGAGTTGGAAAATAG
AATGCGAAACCACAGTTCACACAGCGAAGAGATGTTGTAGATAATATTTT
AAGATTGTTGCAGCAAACTTATTTTTAATGTAAATTGGTACTTATTTAtt
gatcaaaatatttatttttatagatAAATTAATAATTTTATACGAAAAGA
AATGTATTCATTGTTCTTGTCTTCTAAAATATTGTTGTCAC Coding sequence (CDS) from alignment at scaffold_367:116919..121809+ >TCONS_00062507 ID=TCONS_00062507|Name=TCONS_00062507|organism=Clytia hemisphaerica|type=CDS|length=2430bp|location=Sequence derived from alignment at scaffold_367:116919..121809+ (Clytia hemisphaerica)
ATGACTTTCTACGTCGGAGATTCACTAAAAGCTTTATTAAGTATCAAACT
AAAAACACGCGACGATCATTTATCCGATCAGGTTTCACGAATCTTAGTCG
TCAAAGTCCTCGTCGTTGTCAGCATGGGTTTAAGTTTAATTTGGTTCCAC
AGTGAGACACGCTGTATACCTCCCGTCAAAAGCAAGGGTAAAGAACTACC
GGCGCAATTCATACATCGTGGTTGTTGGGCCAAAGGTTTTTACATCTATC
CACAGTTAGGTGAACACATGCGTAAGAGCGCTTATTACGGAATCCCGTTC
GAACTGAAATGGAACGGCTACCGACCGGACGACCCGTCACAATTATGTCG
TGTCAACGAATATGGGGGTAGTACAGACGAAGAAAATTGTTTTGCGATGG
AAAGAGAATATTTCAATCAATATCAATGGATGCCAATGTCAATGTTGTTG
CTATCCTTTGTCTTTTATTTCCCCTATATCGTCTTTCGTATGGTCAACAC
TGATCTCATCAATCTTCGATCGAACCTAAAAAACCTACAGATGGAGATGA
ATCAATTGGCTTATCTTTATTTCTCACAAGAGATAAATTCCATACGCCGA
AACCGCTTGAGAGTGATCGCAAATTATGGCGTTAAATGTCTCTACATATT
CAGCAACATTCTCGCCATGTCATTTTTACATAGGCTACTTAACGACCGTT
TCTATACATATGGTCTCGATTGGTTATCATGGTCTAAAGGCAACTCTACC
GAAAGACTATACtttgaaaaaagagaaacaccgaGTCCTGGGAATCAACT
TTTACCGATCTTCGGCATGTGCGATTTACACGACGTCCGTCTCGATTTAA
CGACATCGTATACCGACAAAATGACCGTCGTTTGTGAAATGGCGTCACAC
GCCGTCTATCAACACACGCTCGTTATAATATGGTTTCTACTAGTCTTCTC
AAACGCTATGTCAATCGTGGGTTTGATTTATTATCTCTGTAATCATTTGC
GTATGTTACAAAGATCCAAAACAGCGAAAACGGATTGCTTATTATTTAGG
AGATACATTACTTTACGTGAAATGGAATATCTTGAATGTATCAAAAACAT
TGACTTGGCTGTTTATGCAAAAGTCAATAAAATATTGGATGATAATCTAC
TGAACAATTCTGACGAAACGCCCAAGATTCAGGGCGGGCAACCAATTCAA
GTTTTAACCATGTAGATGACTTTCTACGTCGGAGATTCACTAAAAGCTTT
ATTAAGTATCAAACTAAAAACACGCGACGATCATTTATCCGATCAGGTTT
CACGAATCTTAGTCGTCAAAGTCCTCGTCGTTGTCAGCATGGGTTTAAGT
TTAATTTGGTTCCACAGTGAGACACGCTGTATACCTCCCGTCAAAAGCAA
GGGTAAAGAACTACCGGCGCAATTCATACATCGTGGTTGTTGGGCCAAAG
GTTTTTACATCTATCCACAGTTAGGTGAACACATGCGTAAGAGCGCTTAT
TACGGAATCCCGTTCGAACTGAAATGGAACGGCTACCGACCGGACGACCC
GTCACAATTATGTCGTGTCAACGAATATGGGGGTAGTACAGACGAAGAAA
ATTGTTTTGCGATGGAAAGAGAATATTTCAATCAATATCAATGGATGCCA
ATGTCAATGTTGTTGCTATCCTTTGTCTTTTATTTCCCCTATATCGTCTT
TCGTATGGTCAACACTGATCTCATCAATCTTCGATCGAACCTAAAAAACC
TACAGATGGAGATGAATCAATTGGCTTATCTTTATTTCTCACAAGAGATA
AATTCCATACGCCGAAACCGCTTGAGAGTGATCGCAAATTATGGCGTTAA
ATGTCTCTACATATTCAGCAACATTCTCGCCATGTCATTTTTACATAGGC
TACTTAACGACCGTTTCTATACATATGGTCTCGATTGGTTATCATGGTCT
AAAGGCAACTCTACCGAAAGACTATACtttgaaaaaagagaaacaccgaG
TCCTGGGAATCAACTTTTACCGATCTTCGGCATGTGCGATTTACACGACG
TCCGTCTCGATTTAACGACATCGTATACCGACAAAATGACCGTCGTTTGT
GAAATGGCGTCACACGCCGTCTATCAACACACGCTCGTTATAATATGGTT
TCTACTAGTCTTCTCAAACGCTATGTCAATCGTGGGTTTGATTTATTATC
TCTGTAATCATTTGCGTATGTTACAAAGATCCAAAACAGCGAAAACGGAT
TGCTTATTATTTAGGAGATACATTACTTTACGTGAAATGGAATATCTTGA
ATGTATCAAAAACATTGACTTGGCTGTTTATGCAAAAGTCAATAAAATAT
TGGATGATAATCTACTGAACAATTCTGACGAAACGCCCAAGATTCAGGGC
GGGCAACCAATTCAAGTTTTAACCATGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062507-exon-scaffold_367-1491911889:116919..117791 | TCONS_00062507-exon-scaffold_367-1491911889:116919..117791 | Clytia hemisphaerica | exon |
| TCONS_00062507-exon-scaffold_367-1510915933:116919..117791 | TCONS_00062507-exon-scaffold_367-1510915933:116919..117791 | Clytia hemisphaerica | exon |
| TCONS_00062507-exon-scaffold_367-1575043694:116919..117791 | TCONS_00062507-exon-scaffold_367-1575043694:116919..117791 | Clytia hemisphaerica | exon |
| TCONS_00062507-exon-scaffold_367-1491911889:119975..121809 | TCONS_00062507-exon-scaffold_367-1491911889:119975..121809 | Clytia hemisphaerica | exon |
| TCONS_00062507-exon-scaffold_367-1510915933:119975..121809 | TCONS_00062507-exon-scaffold_367-1510915933:119975..121809 | Clytia hemisphaerica | exon |
| TCONS_00062507-exon-scaffold_367-1575043694:119975..121809 | TCONS_00062507-exon-scaffold_367-1575043694:119975..121809 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_367 | supercontig | scaffold_367:116919..121809 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000990 | Innexin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005921 | gap junction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005921 |
gap junction |
Blast
The following BLAST results are available for this feature:
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