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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062504 ID=TCONS_00062504|Name=TCONS_00062504|organism=Clytia hemisphaerica|type=transcript|length=349bp
TTATTTCCCATACATGATTTTCAGGATTGCCAACACGGATATGATCAATT
TAAAACATAATTTGCGACAACAGGTGACAGCCAAACAATTAGTGGACAGC
TATTTCAACCATGAAATCAACTCCATAACGCGAAACCGTGTTCGAACCGT
CGCAAATTACATTGTCAAAGTCCTATACATTATGAGCGGTGTATTTGGAC
TGACATTCTTAGATTGGTTGACCAATTATCGTTTCATGTCCTACGGTCCT
GAATGGATCAATTTCGCCAGGAACAGCAGCTCCGTGAAACGAGATTTTAA
ATTGAGAACTCAACCGACACCTGGAAATCGTTTTTTACCGAACTTCGCG Run BLAST on NCBI protein sequence of TCONS_00062504-protein >TCONS_00062504-protein ID=TCONS_00062504-protein|Name=TCONS_00062504-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
YFPYMIFRIANTDMINLKHNLRQQVTAKQLVDSYFNHEINSITRNRVRTV
ANYIVKVLYIMSGVFGLTFLDWLTNYRFMSYGPEWINFARNSSSVKRDFK
LRTQPTPGNRFLPNFA Run BLAST on NCBI transcript from alignment at scaffold_367:65045..66323+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062504 ID=TCONS_00062504|Name=TCONS_00062504|organism=Clytia hemisphaerica|type=transcript|length=1279bp|location=Sequence derived from alignment at scaffold_367:65045..66323+ (Clytia hemisphaerica)
TTATTTCCCATACATGATTTTCAGGATTGCCAACACGGATATGATCAATT
TAAAACATAATTTGCGACAACAGGTAGGATTTAGATTCGAAAATATATTG
TCCAATTTGTCTAAAATTTTTCAGATGAACGGataaaaaatctaactttc
tCACATTGTTTAAAGTAGTTCTATTAAAAGTAAGTAAAGTATCTCTGcta
ccgcagtcggaggcgacccgaaggctcctctctcgatagctatctacccg
aatgTAGGGGGGGAGGGTACTCTTTTTCCCTGGATTCCCCACTTACCCTT
Ggcccttctcttaattgctgagcatcaagtatagaggcatcaagtaccat
tttggtaATATTTGGTATAACCCGGCtaggggttgaacccacaaccttgc
gcatcgtagccggatgctctaccactgcattACGGTCGCTCTTGTAGTTC
TAGCAAGCAAATGATCCTACTACCGTTCATGAAAAAGTCTTTAGGAAAAT
TTTCACAATCGTAAAAAAACTCACTCCAATTTTTCTAATCGAAATAATAC
TCACTaaatagagtcgatattttgcGTGGATAGCCGATTAATGTAGGACT
TTTAGATAGTCTTTCAATTGCTTTCACATGGTCTACGACCAGCTGACTCG
GTTATCTGTGAACTGAACGTCAGAGAGGAGCGTGGATTCTTACCGGGAAC
CCATGGTTTATTTGTATATTTGTATTGCTGGCGTCTTTGTTTGACCATCT
TTGGTCATCGTTCCTTAACTATAATAACTCTCAAATCCTCACTCCgaaaa
ataaattgttttttacGTAATTGTTCTGCAGAGTCACGGTCTCTATCAGT
TTGGTCGTCGGAGCTTTATAGTCCTTTTTATACCTATACTGTCTTGTCAA
AGGTCCCAATGNTCTATCAGTTTGGTCGTCGGAGCTTTATAGTCCTATTT
ATACCTATACTGTCTTGTCAAAGGTCCCAATACTTTGTTTTTTCGTGTTT
TAGGTGACAGCCAAACAATTAGTGGACAGCTATTTCAACCATGAAATCAA
CTCCATAACGCGAAACCGTGTTCGAACCGTCGCAAATTACATTGTCAAAG
TCCTATACATTATGAGCGGTGTATTTGGACTGACATTCTTAGATTGGTTG
ACCAATTATCGTTTCATGTCCTACGGTCCTGAATGGATCAATTTCGCCAG
GAACAGCAGCTCCGTGAAACGAGATTTTAAATTGAGAACTCAACCGACAC
CTGGAAATCGTTTTTTACCGAACTTCGCG Coding sequence (CDS) from alignment at scaffold_367:65045..66323+ >TCONS_00062504 ID=TCONS_00062504|Name=TCONS_00062504|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at scaffold_367:65045..66323+ (Clytia hemisphaerica)
TATTTCCCATACATGATTTTCAGGATTGCCAACACGGATATGATCAATTT
AAAACATAATTTGCGACAACAGGTGACAGCCAAACAATTAGTGGACAGCT
ATTTCAACCATGAAATCAACTCCATAACGCGAAACCGTGTTCGAACCGTC
GCAAATTACATTGTCAAAGTCCTATACATTATGAGCGGTGTATTTGGACT
GACATTCTTAGATTGGTTGACCAATTATCGTTTCATGTCCTACGGTCCTG
AATGGATCAATTTCGCCAGGAACAGCAGCTCCGTGAAACGAGATTTTAAA
TTGAGAACTCAACCGACACCTGGAAATCGTTTTTTACCGAACTTCGCGTA
TTTCCCATACATGATTTTCAGGATTGCCAACACGGATATGATCAATTTAA
AACATAATTTGCGACAACAGGTGACAGCCAAACAATTAGTGGACAGCTAT
TTCAACCATGAAATCAACTCCATAACGCGAAACCGTGTTCGAACCGTCGC
AAATTACATTGTCAAAGTCCTATACATTATGAGCGGTGTATTTGGACTGA
CATTCTTAGATTGGTTGACCAATTATCGTTTCATGTCCTACGGTCCTGAA
TGGATCAATTTCGCCAGGAACAGCAGCTCCGTGAAACGAGATTTTAAATT
GAGAACTCAACCGACACCTGGAAATCGTTTTTTACCGAACTTCGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062504-exon-scaffold_367-1491911889:65045..65117 | TCONS_00062504-exon-scaffold_367-1491911889:65045..65117 | Clytia hemisphaerica | exon |
| TCONS_00062504-exon-scaffold_367-1510915933:65045..65117 | TCONS_00062504-exon-scaffold_367-1510915933:65045..65117 | Clytia hemisphaerica | exon |
| TCONS_00062504-exon-scaffold_367-1575043694:65045..65117 | TCONS_00062504-exon-scaffold_367-1575043694:65045..65117 | Clytia hemisphaerica | exon |
| TCONS_00062504-exon-scaffold_367-1491911889:66048..66323 | TCONS_00062504-exon-scaffold_367-1491911889:66048..66323 | Clytia hemisphaerica | exon |
| TCONS_00062504-exon-scaffold_367-1510915933:66048..66323 | TCONS_00062504-exon-scaffold_367-1510915933:66048..66323 | Clytia hemisphaerica | exon |
| TCONS_00062504-exon-scaffold_367-1575043694:66048..66323 | TCONS_00062504-exon-scaffold_367-1575043694:66048..66323 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_367 | supercontig | scaffold_367:65045..66323 + |
Blast
The following BLAST results are available for this feature:
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