TCONS_00062501 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062501
Unique NameTCONS_00062501
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length720

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062501 ID=TCONS_00062501|Name=TCONS_00062501|organism=Clytia hemisphaerica|type=transcript|length=720bp
CTTTGATAATAAATAGCCTGGATCTTTGAAAAAGTGGAAAGCCAATGAGA
TTCGAGCTTTACTTCTTCACCACTACTGGAAACCGTACGACTTTGATAGG
TTCGGCGTGGTCTAATAATATCTGATAAAAGAAGGGATGCTCAGAAATAC
ACCAGTTTTAGTTAAAGCTAAAAATCACACCTTAGGTTTGATTTCATTTT
CCTAATTGTGAGACTCGGATTTTATTAATCTACATATAATTCAGATTCTA
ACGGTACCAAGAAACCCAGTGAGAGATTCTTTTCAAGGTTTCGAGGAAAT
TCTGACagaatacttggcacaaaaagtATCATCTCGATAGAAAGGCCATC
ACATTAGTTCACCATATTCTAAAATAATTaacaaatttggaaattttata
tCTCTACTCTAGATGCCTTTTTACCATTATCAATCAATTGTTCTTATTGT
CTAAATATTAGTGTTCTTNTTTTTACCATTATCAATCAGTTGTTTAAAAA
ATCTCTTGATTCTTCTAATCGACAAGGGCGGTTTTTGCAAGTCGTTGAGC
TACGGCTGCAACAACAGCCGCCCCACGCCCTGAGCCATCTTCAGCCAGCC
TCAAATTAACCTGTGTTGTTGGCAAAAATTCCTCCAATGCTTGATGCATG
AATCGTTTGAACGTTGGGTGTTTTTTGTAAAGACTTCCGTCCATGGCCAC
ACTTACTGATGATCGTTTCA
Run BLAST on NCBI

transcript from alignment at scaffold_366:4877..5596

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062501 ID=TCONS_00062501|Name=TCONS_00062501|organism=Clytia hemisphaerica|type=transcript|length=720bp|location=Sequence derived from alignment at scaffold_366:4877..5596 (Clytia hemisphaerica)
TGAAACGATCATCAGTAAGTGTGGCCATGGACGGAAGTCTTTACAAAAAA
CACCCAACGTTCAAACGATTCATGCATCAAGCATTGGAGGAATTTTTGCC
AACAACACAGGTTAATTTGAGGCTGGCTGAAGATGGCTCAGGGCGTGGGG
CGGCTGTTGTTGCAGCCGTAGCTCAACGACTTGCAAAAACCGCCCTTGTC
GATTAGAAGAATCAAGAGATTTTTTAAACAACTGATTGATAATGGTAAAA
ANAAGAACACTAATATTTAGACAATAAGAACAATTGATTGATAATGGTAA
AAAGGCATCTAGAGTAGAGatataaaatttccaaatttgttAATTATTTT
AGAATATGGTGAACTAATGTGATGGCCTTTCTATCGAGATGATacttttt
gtgccaagtattctGTCAGAATTTCCTCGAAACCTTGAAAAGAATCTCTC
ACTGGGTTTCTTGGTACCGTTAGAATCTGAATTATATGTAGATTAATAAA
ATCCGAGTCTCACAATTAGGAAAATGAAATCAAACCTAAGGTGTGATTTT
TAGCTTTAACTAAAACTGGTGTATTTCTGAGCATCCCTTCTTTTATCAGA
TATTATTAGACCACGCCGAACCTATCAAAGTCGTACGGTTTCCAGTAGTG
GTGAAGAAGTAAAGCTCGAATCTCATTGGCTTTCCACTTTTTCAAAGATC
CAGGCTATTTATTATCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039164XLOC_039164Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062501-exon-scaffold_366-1491911889:4877..5596TCONS_00062501-exon-scaffold_366-1491911889:4877..5596Clytia hemisphaericaexon
TCONS_00062501-exon-scaffold_366-1510915933:4877..5596TCONS_00062501-exon-scaffold_366-1510915933:4877..5596Clytia hemisphaericaexon
TCONS_00062501-exon-scaffold_366-1575043694:4877..5596TCONS_00062501-exon-scaffold_366-1575043694:4877..5596Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_366supercontigscaffold_366:4877..5596 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.187315	0.0907662	0	0.524521	1.66446	2.61337	1.67824	2.62452	2.56078	2.75377	6.21612	2.03931	4.70836	5.847	0.108025	0.174252	0	0.0677392	0.110003	0.589369	0.189552	0.138194	0	0.198112	12.4747	10.2494	0.265899	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062501 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top