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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062500 ID=TCONS_00062500|Name=TCONS_00062500|organism=Clytia hemisphaerica|type=transcript|length=324bp
ATTAAAAAGAGAACTTGGCAGTTTGTCTGAGCAAGCttacaatcaatcaa
tcaaatttaatgataaaaatgataaagatGATGCACATGAAGAAAATGGC
AATGACAATGATCCACAAAcaactcaaatcaaatcaaattctaTAAGAAG
TCACAAGATTCCTAAACATCGAGTGTCAGAAGATCTGGTTAATTGGTTGG
ATAAAGTTCGAGAAAATCCAAATGAATATTTAAGTCATGAAATTCCAAGA
AGAGAAATCATTACTGACGATGAAATTGATTTAGAGTCATTCCAATACGA
CATGAATCAAACCTTACAGGGTAT Run BLAST on NCBI protein sequence of TCONS_00062500-protein >TCONS_00062500-protein ID=TCONS_00062500-protein|Name=TCONS_00062500-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
LKRELGSLSEQAYNQSIKFNDKNDKDDAHEENGNDNDPQTTQIKSNSIRS
HKIPKHRVSEDLVNWLDKVRENPNEYLSHEIPRREIITDDEIDLESFQYD
MNQTLQG Run BLAST on NCBI transcript from alignment at scaffold_366:22359..23302+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062500 ID=TCONS_00062500|Name=TCONS_00062500|organism=Clytia hemisphaerica|type=transcript|length=944bp|location=Sequence derived from alignment at scaffold_366:22359..23302+ (Clytia hemisphaerica)
ATTAAAAAGAGAACTTGGCAGTTTGTCTGAGCAAGCttacaatcaatcaa
tcaaatttaatgataaaaatgataaagatGATGCACATGAAGAAAATGGC
AATGACAATGATCCACAAAcaactcaaatcaaatcaaattctaTAAGAAG
TAAATAAAAACTCTAAAGTTTTTAATTTGTTGTAGTAAAGTTTATTATTG
CACCATTTTTAAAATAGACCTTAGTCCTCTTTTGTGCTAAATTGTAGGGG
ATGAGGTAGGTCtcaaggaaaaaaaaaacaataagggGGTCACAAATAAA
GTGCTGTTGGCACGACTATCTGAAAATACTTGGATAATGAAGGTTTTTGG
CACTTCGTAgcacaaaaatcataaaataggtGTCGTTATTAAGTGAAGTT
GGGGGTTAAAATATTGCCAAAATATGCTGAGTACGAGTTTTCTTGGCTGA
GGGTTACATTTGGGAGTATTATGTTTATTGTATATCACTTTTTATATTAG
GTCACAAGATTCCTAAACATCGAGTGTCAGAAGATCTGGTTAATTGGTTG
GATAAAGTTCGAGGTATATATCAACAATGAAGCTTTTTGTCTTTACCTAT
CAACCTCAACTCTTTTGATTTCCAtgtgtttcaattttttaaatgctTAA
ATTAAAAGGGTTGTGTGAAAATGCTTAATCGACCATCAAAGGGTTGTTTT
TTCCTTTATATCCCGAAAATTAGGTACAATAACTCTTTATGACTTAATGT
CCAATTTGACGCAAAATAGGCAAAACCTTTGAGTacaatgttgaaaattt
gaaaaattgtaatttttaacaaatttttctAGAAAATCCAAATGAATATT
TAAGTCATGAAATTCCAAGAAGAGAAATCATTACTGACGATGAAATTGAT
TTAGAGTCATTCCAATACGACATGAATCAAACCTTACAGGGTAT Coding sequence (CDS) from alignment at scaffold_366:22359..23302+ >TCONS_00062500 ID=TCONS_00062500|Name=TCONS_00062500|organism=Clytia hemisphaerica|type=CDS|length=963bp|location=Sequence derived from alignment at scaffold_366:22359..23302+ (Clytia hemisphaerica)
TTAAAAAGAGAACTTGGCAGTTTGTCTGAGCAAGCttacaatcaatcaat
caaatttaatgataaaaatgataaagatGATGCACATGAAGAAAATGGCA
ATGACAATGATCCACAAAcaactcaaatcaaatcaaattctaTAAGAAGT
CACAAGATTCCTAAACATCGAGTGTCAGAAGATCTGGTTAATTGGTTGGA
TAAAGTTCGAGAAAATCCAAATGAATATTTAAGTCATGAAATTCCAAGAA
GAGAAATCATTACTGACGATGAAATTGATTTAGAGTCATTCCAATACGAC
ATGAATCAAACCTTACAGGGTTTAAAAAGAGAACTTGGCAGTTTGTCTGA
GCAAGCttacaatcaatcaatcaaatttaatgataaaaatgataaagatG
ATGCACATGAAGAAAATGGCAATGACAATGATCCACAAAcaactcaaatc
aaatcaaattctaTAAGAAGTCACAAGATTCCTAAACATCGAGTGTCAGA
AGATCTGGTTAATTGGTTGGATAAAGTTCGAGAAAATCCAAATGAATATT
TAAGTCATGAAATTCCAAGAAGAGAAATCATTACTGACGATGAAATTGAT
TTAGAGTCATTCCAATACGACATGAATCAAACCTTACAGGGTTTAAAAAG
AGAACTTGGCAGTTTGTCTGAGCAAGCttacaatcaatcaatcaaattta
atgataaaaatgataaagatGATGCACATGAAGAAAATGGCAATGACAAT
GATCCACAAAcaactcaaatcaaatcaaattctaTAAGAAGTCACAAGAT
TCCTAAACATCGAGTGTCAGAAGATCTGGTTAATTGGTTGGATAAAGTTC
GAGAAAATCCAAATGAATATTTAAGTCATGAAATTCCAAGAAGAGAAATC
ATTACTGACGATGAAATTGATTTAGAGTCATTCCAATACGACATGAATCA
AACCTTACAGGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062500-exon-scaffold_366-1491911889:22359..22507 | TCONS_00062500-exon-scaffold_366-1491911889:22359..22507 | Clytia hemisphaerica | exon |
| TCONS_00062500-exon-scaffold_366-1510915933:22359..22507 | TCONS_00062500-exon-scaffold_366-1510915933:22359..22507 | Clytia hemisphaerica | exon |
| TCONS_00062500-exon-scaffold_366-1575043694:22359..22507 | TCONS_00062500-exon-scaffold_366-1575043694:22359..22507 | Clytia hemisphaerica | exon |
| TCONS_00062500-exon-scaffold_366-1491911889:22859..22921 | TCONS_00062500-exon-scaffold_366-1491911889:22859..22921 | Clytia hemisphaerica | exon |
| TCONS_00062500-exon-scaffold_366-1510915933:22859..22921 | TCONS_00062500-exon-scaffold_366-1510915933:22859..22921 | Clytia hemisphaerica | exon |
| TCONS_00062500-exon-scaffold_366-1575043694:22859..22921 | TCONS_00062500-exon-scaffold_366-1575043694:22859..22921 | Clytia hemisphaerica | exon |
| TCONS_00062500-exon-scaffold_366-1491911889:23191..23302 | TCONS_00062500-exon-scaffold_366-1491911889:23191..23302 | Clytia hemisphaerica | exon |
| TCONS_00062500-exon-scaffold_366-1510915933:23191..23302 | TCONS_00062500-exon-scaffold_366-1510915933:23191..23302 | Clytia hemisphaerica | exon |
| TCONS_00062500-exon-scaffold_366-1575043694:23191..23302 | TCONS_00062500-exon-scaffold_366-1575043694:23191..23302 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_366 | supercontig | scaffold_366:22359..23302 + |
Blast
The following BLAST results are available for this feature:
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