TCONS_00062482 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062482
Unique NameTCONS_00062482
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2228

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062482 ID=TCONS_00062482|Name=TCONS_00062482|organism=Clytia hemisphaerica|type=transcript|length=2228bp
tgagtccattTTTAGAATATTCTAGACCGTAGTACGCTCAAAGTCAAACG
TACACTCCATAGTTTTCGCCCAAAAAAATTCTCCCCGCCGCCGTCCCCAG
AAATACTTTCGCAGGAAAGGGATAGTAATTTCCATCATTTATCATTGTTA
TTAATATTTCACCCTTTCTATCATTAGATGTACACTGGCTACTGGGTTTC
CAACTTTACTACAATGGAAGAAATTGCAATTGACAATCTGCATTATTTAG
GATACAAACCAAACGGGGATCAATTGATTTTAGATACCGAAGAAAAACCT
TCCTATGAAGCAAAGACGGGCATTTGCGAAAGAGAAAAATTGcaagaaag
aaaagataaagATGATGATTTCAACATACGAAAAGAAGATTTTACATCTA
ATCATAATCACCACATACAACAACAACCCCCTCATGTGAACCAACATCAG
TCTTTTCAAACTCCTTCAAACATGGACCATCATTCATCTAACCATCCTCT
TAATCGAGAGAATCCGCAAAAACCAACTGGCATCAGTCTTTATGATAATC
AACAACAGTCGCCAACGTATCCGTATTCTTCAAATGGACAACCACATTCA
AATCTACCACAAAACCAAGTTCGACCCATTGCTTATCCCCCAAGTTTGCC
TCAAGGACAACAACCCTTTGGAAACCTAACACACCAACAATATTATCAGC
CTCCGTCCTATCAAAACCCAGGCCTTCAAGCCACCGAACCTCAAAACTTC
CATAATTCTAATCTGAGTAATTATGGAAACACTCACCCACAGTCAAATCC
GACTGGTCATGATTTATATGGTGACGCGCTTGACGATTTGAGAGAAACTG
AGGCAGACACTGCCAGTCCGCATTCAAGTGAAAGACCTACGCACCATCAA
AGAGGTGATAACGTCAATCAACAAATGCATGGGTACTCCGCGCAACAAAT
GGACCATAATGCCCATCAACAAGGTGGTATACCTCCCAATCAACAAATGC
AACCAGCAAGACCGGTACCCAAACCAAGACGGAACCCCCCAGCAAATTTA
GGAAATATGCAAAATAATCCAGATTCAAATTTCAGTACAAATGAGATAAC
TGAAGAGCCTACCTTTGTTCCTTAGTTTGATTTCGCCGCACATTTTCTCA
ATCACGTTTTAAATGAATGACTTCTCGTATGTTATGCACCCAGTAATTCA
GTGTTTATGCGACGGAGAAAGTGGTCTAAGCATAATTTCACTTGGAATAC
ATGCCGTCGTATGGCTTTCTTTTAAATGGTTTGCTTCGAAGGGACCCGTC
GCAAAACGGGCTGGCGTAATACAATGGATTCTACATTATTTGGAAAACTC
GTGTCGAATAGAAACTTAAATACAAAGGTTCGAGAGAACTCATTCGCATT
GGAGTTAAGAGACATTTCAGAggtataccttaagggaagaaattttcgcg
gaatttaatttcgcgaatttgggtgtaattcgcgaaattaaattccgcga
aacacaccaaaattgttaaatcgcgaaattaaattccgcggaattcgatt
tttttcttcttctttttttttgttgtttttgaccaggtattaccaaaaaa
tatggacacaattgatttttaagcattataacgtgtatttcttatcaaat
atTAACAAATATAAATAACTCCGTGATGGTTAAAAGTTAATTtaagttga
taaattcttcttaatcgtgaaattaaattccgtgaaacttttgaaatcgg
ctcattcgcgaaattaaattccgcgaaatttgcatttttgaaactctgat
tcgcgaaattaaattccgcgaaaatttcttctcgcgaaaatttctaccct
taagGTATATAGAGACACGAGTGACTGTACTTAATTTTCCTACATATAGA
TTGAGTTTTGCTTTGcttttgttataattttttgtatataatatttttgt
AGATCATCTctaatgaaattgatttttgatttctttaattCAGGCAGTAc
ttagtcatttaaaaaaaaaactcatatAATTCAAATGATACTAggggaac
ttaattttttgcttaaattgaAGAAACGGAGAAATAATTTATCTCTTTTT
TGGAATGAATCCATTCACTTTGAAAGTGCGCTCTGTTTTTGTTATTTGAC
GGTAAAACAATTCAGGCccccagtcataaaaaaattggaatatcaatccc
catcgactttttaccccggggggggggg
Run BLAST on NCBI

transcript from alignment at scaffold_365:155076..157450-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062482 ID=TCONS_00062482|Name=TCONS_00062482|organism=Clytia hemisphaerica|type=transcript|length=2375bp|location=Sequence derived from alignment at scaffold_365:155076..157450- (Clytia hemisphaerica)
TGAGTCCATTTTTAGAATATTCTAGACCGTAGTACGCTCAAAGTCAAACG
TACACTCCATAGTTTTCGCCCAAAAAAATTCTCCCCGCCGCCGTCCCCAG
AAATACTTTCGCAGGAAAGGGATAGTAATTTCCATCATTTATCATTGTTA
TTAATATTTCACCCTTTCTATCATTAGATGTACACTGGCTACTGGGTTTC
CAACTTTACTACAATGGAAGAAATTGCAATTGACAATCTGCATTATTTAG
GATACAAACCAAACGGGGATCAATTGATTTTAGATACCGAAGAAAAACCT
TCCTATGAAGCAAAGACGGTAGCTATTGATTGTTTTTTGGCCTATATTTA
TTGTCAGTACGTGTTTGAAATCATTAAACAAGTATACGATCTGAAGTACA
GTTTTGGAGTTGCTCGAAAAATTCTGTTCAAAATCAACAATGGTGTTCTT
ATTGATGATTTGAAGGGCATTTGCGAAAGAGAAAAATTGCAAGAAAGAAA
AGATAAAGATGATGATTTCAACATACGAAAAGAAGATTTTACATCTAATC
ATAATCACCACATACAACAACAACCCCCTCATGTGAACCAACATCAGTCT
TTTCAAACTCCTTCAAACATGGACCATCATTCATCTAACCATCCTCTTAA
TCGAGAGAATCCGCAAAAACCAACTGGCATCAGTCTTTATGATAATCAAC
AACAGTCGCCAACGTATCCGTATTCTTCAAATGGACAACCACATTCAAAT
CTACCACAAAACCAAGTTCGACCCATTGCTTATCCCCCAAGTTTGCCTCA
AGGACAACAACCCTTTGGAAACCTAACACACCAACAATATTATCAGCCTC
CGTCCTATCAAAACCCAGGCCTTCAAGCCACCGAACCTCAAAACTTCCAT
AATTCTAATCTGAGTAATTATGGAAACACTCACCCACAGTCAAATCCGAC
TGGTCATGATTTATATGGTGACGCGCTTGACGATTTGAGAGAAACTGAGG
CAGACACTGCCAGTCCGCATTCAAGTGAAAGACCTACGCACCATCAAAGA
GGTGATAACGTCAATCAACAAATGCATGGGTACTCCGCGCAACAAATGGA
CCATAATGCCCATCAACAAGGTGGTATACCTCCCAATCAACAAATGCAAC
CAGCAAGACCGGTACCCAAACCAAGACGGAACCCCCCAGCAAATTTAGGA
AATATGCAAAATAATCCAGATTCAAATTTCAGTACAAATGAGATAACTGA
AGAGCCTACCTTTGTTCCTTAGTTTGATTTCGCCGCACATTTTCTCAATC
ACGTTTTAAATGAATGACTTCTCGTATGTTATGCACCCAGTAATTCAGTG
TTTATGCGACGGAGAAAGTGGTCTAAGCATAATTTCACTTGGAATACATG
CCGTCGTATGGCTTTCTTTTAAATGGTTTGCTTCGAAGGGACCCGTCGCA
AAACGGGCTGGCGTAATACAATGGATTCTACATTATTTGGAAAACTCGTG
TCGAATAGAAACTTAAATACAAAGGTTCGAGAGAACTCATTCGCATTGGA
GTTAAGAGACATTTCAGAGGTATACCTTAAGGGAAGAAATTTTCGCGGAA
TTTAATTTCGCGAATTTGGGTGTAATTCGCGAAATTAAATTCCGCGAAAC
ACACCAAAATTGTTAAATCGCGAAATTAAATTCCGCGGAATTCGATTTTT
TTCTTCTTCTTTTTTTTTGTTGTTTTTGACCAGGTATTACCAAAAAATAT
GGACACAATTGATTTTTAAGCATTATAACGTGTATTTCTTATCAAATATT
AACAAATATAAATAACTCCGTGATGGTTAAAAGTTAATTTAAGTTGATAA
ATTCTTCTTAATCGTGAAATTAAATTCCGTGAAACTTTTGAAATCGGCTC
ATTCGCGAAATTAAATTCCGCGAAATTTGCATTTTTGAAACTCTGATTCG
CGAAATTAAATTCCGCGAAAATTTCTTCTCGCGAAAATTTCTACCCTTAA
GGTATATAGAGACACGAGTGACTGTACTTAATTTTCCTACATATAGATTG
AGTTTTGCTTTGCTTTTGTTATAATTTTTTGTATATAATATTTTTGTAGA
TCATCTCTAATGAAATTGATTTTTGATTTCTTTAATTCAGGCAGTACTTA
GTCATTTAAAAAAAAAACTCATATAATTCAAATGATACTAGGGGAACTTA
ATTTTTTGCTTAAATTGAAGAAACGGAGAAATAATTTATCTCTTTTTTGG
AATGAATCCATTCACTTTGAAAGTGCGCTCTGTTTTTGTTATTTGACGGT
AAAACAATTCAGGCCCCCAGTCATAAAAAAATTGGAATATCAATCCCCAT
CGACTTTTTACCCCGGGGGGGGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039147XLOC_039147Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062482-exon-scaffold_365-1575043694:157133..157450TCONS_00062482-exon-scaffold_365-1575043694:157133..157450Clytia hemisphaericaexon
TCONS_00062482-exon-scaffold_365-1575043694:155076..156985TCONS_00062482-exon-scaffold_365-1575043694:155076..156985Clytia hemisphaericaexon
TCONS_00062482-exon-scaffold_365-1510915933:157133..157450TCONS_00062482-exon-scaffold_365-1510915933:157133..157450Clytia hemisphaericaexon
TCONS_00062482-exon-scaffold_365-1510915933:155076..156985TCONS_00062482-exon-scaffold_365-1510915933:155076..156985Clytia hemisphaericaexon
TCONS_00062482-exon-scaffold_365-1491911889:157133..157450TCONS_00062482-exon-scaffold_365-1491911889:157133..157450Clytia hemisphaericaexon
TCONS_00062482-exon-scaffold_365-1491911889:155076..156985TCONS_00062482-exon-scaffold_365-1491911889:155076..156985Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_365supercontigscaffold_365:155076..157450 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.34087	4.962	5.2506	4.44794	19.9068	11.4356	10.9823	16.684	4.91948	6.1113	5.33262	4.64163	4.26754	4.48489	3.39044	4.08853	5.41187	4.39666	3.97207	5.75501	11.7982	14.327	7.81126	8.58357	6.2677	6.7775	13.262	12.1363	5.85151	8.17602
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062482 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top