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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062472 ID=TCONS_00062472|Name=TCONS_00062472|organism=Clytia hemisphaerica|type=transcript|length=1701bp
TTGcgattgaacaaaataaaacaatctaaatattttccagggggtgaatT
CTTAGTTTTTCCTCTATTTCTTCATGCTCAGGGAGTCCTCATATATACAC
CACAGGTAAACTCATGAAACCCGCCaacttaattttaaatttggcaaatc
CCAAAGATTGACAAACACTAATTTTTCCCACTTACAGcttttctctttga
tcttttattgAGGCCCCCAGCgacacccctaatcacgccatcacgcaaaa
aaaaattctccatcacgaatcacgaaaatcgctataatttgtcatcacgc
aaaaaatagccataaatagcccaaatcacgcatcgtGCCTCAAATtattg
ccctatcacgcatcacgccaaaatcttgatcacgccatcacgccaaaaaa
aatctctaatcacgccatcacgcaagaaaaaagtcccaatcacgacATCA
CGTAAACCGCTGGGGGGCTCtttattggtttcttttgttgatttcttgCG
CCATCGATGACTTGCGCATCATTTCTTGAAATAGAAACACTCAATATTTA
CTTAACTGTCAAACATTTGCCCTGTATTATCCGGCGCATCAGAAGGTGTC
TGGGTTGCCTGGGGCAGCTTCTCAAAAATACCTGTTCAAATTGCTGGGCA
CGGAACAAGAAAAACTGGGACTGTCCTGAGAATCAACAGGGTTTAAATCC
TAAATGCACctgagaaaaactttttattcatTGTTAAATATTGTTAACCC
TATTCTAactgtttttattatttttattatcattatatAGAATTTACAGT
TATAGGCACGGTGAGCCTCTAAACCGGTCTGCTTACAATATCACGATTTG
TTCTATGCcttgttaaagattttttgaagtataGCTTAGTACGAGTACTG
CCTCTAACCTTCCATATGTAGTGTTTGTCCTTTTCCATATTTGTTTCTCC
TTCGCTTTTCGGTGCCATTCTTTGATGGTTTCAcgttctttcaaaaaaat
cttcacaCTCACTTAGTTTATGAACTGATGCCACGATGCTATTGTTTCtt
cattcttcaaaatgatttttttaatggtCGCCATATTTTCGTTGTGAACA
TTTCATCTTTTCGTACACCTATTCGTTCTGCAGAGACAATGTTCACTTTT
ATAactctttgtttgcttgttttgatCTTCTGTTGTAAAATTGGTGTTCC
TGTAACACATTTGACACGTTCCAATCTCCTTGTTTTGTACTGGAGGCAAA
TCTGTATTTGGTAAGCAGGAAGCTTTGTGAATACATAATGGACGAATCAT
TGGCATTTCCTACACTGCAATACGTTGTTGTCCCATTATTTCATTTATGA
AGCAATTTTCGTCTGTGCAGGgttcatttttttgttgaattttgttgCGT
TAGCAGGAGCTCAACTTTACATTTTTAATCTGACATTAATAAGTCTGCGG
AGGACAAGACTGTAAAAGTATATCTaggggataaaaattttaaaacttcc
aggggataaaaaatgtttttagtcTGTTTTAGTATGTCTATCCTCCTACT
TAAGGTATGAAGAAGAGTGTTTGCAAGTGTATTTTGCAAATTCTGCCATT
TTTAGGGGGCATCTACACATATTCAAGaataattttttgcttttttgaat
GAAACCATTATGTCTATCAATAACTCCCTCAAATTTTCATTattcaacca
a Run BLAST on NCBI transcript from alignment at scaffold_364:396625..398325 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062472 ID=TCONS_00062472|Name=TCONS_00062472|organism=Clytia hemisphaerica|type=transcript|length=1701bp|location=Sequence derived from alignment at scaffold_364:396625..398325 (Clytia hemisphaerica)
ttggttgaatAATGAAAATTTGAGGGAGTTATTGATAGACATAATGGTTT
CattcaaaaaagcaaaaaattattCTTGAATATGTGTAGATGCCCCCTAA
AAATGGCAGAATTTGCAAAATACACTTGCAAACACTCTTCTTCATACCTT
AAGTAGGAGGATAGACATACTAAAACAgactaaaaacattttttatcccc
tggaagttttaaaatttttatcccctAGATATACTTTTACAGTCTTGTCC
TCCGCAGACTTATTAATGTCAGATTAAAAATGTAAAGTTGAGCTCCTGCT
AACGcaacaaaattcaacaaaaaaatgaacCCTGCACAGACGAAAATTGC
TTCATAAATGAAATAATGGGACAACAACGTATTGCAGTGTAGGAAATGCC
AATGATTCGTCCATTATGTATTCACAAAGCTTCCTGCTTACCAAATACAG
ATTTGCCTCCAGTACAAAACAAGGAGATTGGAACGTGTCAAATGTGTTAC
AGGAACACCAATTTTACAACAGAAGatcaaaacaagcaaacaaagagtTA
TAAAAGTGAACATTGTCTCTGCAGAACGAATAGGTGTACGAAAAGATGAA
ATGTTCACAACGAAAATATGGCGaccattaaaaaaatcattttgaagaat
gaaGAAACAATAGCATCGTGGCATCAGTTCATAAACTAAGTGAGtgtgaa
gatttttttgaaagaacgTGAAACCATCAAAGAATGGCACCGAAAAGCGA
AGGAGAAACAAATATGGAAAAGGACAAACACTACATATGGAAGGTTAGAG
GCAGTACTCGTACTAAGCtatacttcaaaaaatctttaacaagGCATAGA
ACAAATCGTGATATTGTAAGCAGACCGGTTTAGAGGCTCACCGTGCCTAT
AACTGTAAATTCTatataatgataataaaaataataaaaacagtTAGAAT
AGGGTTAACAATATTTAACAatgaataaaaagtttttctcagGTGCATTT
AGGATTTAAACCCTGTTGATTCTCAGGACAGTCCCAGTTTTTCTTGTTCC
GTGCCCAGCAATTTGAACAGGTATTTTTGAGAAGCTGCCCCAGGCAACCC
AGACACCTTCTGATGCGCCGGATAATACAGGGCAAATGTTTGACAGTTAA
GTAAATATTGAGTGTTTCTATTTCAAGAAATGATGCGCAAGTCATCGATG
GCGcaagaaatcaacaaaagaaaccaataaaGAGCCCCCCAGCGGTTTAC
GTGATgtcgtgattgggacttttttcttgcgtgatggcgtgattagagat
tttttttggcgtgatggcgtgatcaagattttggcgtgatgcgtgatagg
gcaataATTTGAGGCacgatgcgtgatttgggctatttatggctattttt
tgcgtgatgacaaattatagcgattttcgtgattcgtgatggagaatttt
tttttgcgtgatggcgtgattaggggtgtcGCTGGGGGCCTcaataaaag
atcaaagagaaaagCTGTAAGTGGGAAAAATTAGTGTTTGTCAATCTTTG
GgatttgccaaatttaaaattaagttGGCGGGTTTCATGAGTTTACCTGT
GGTGTATATATGAGGACTCCCTGAGCATGAAGAAATAGAGGAAAAACTAA
GAattcaccccctggaaaatatttagattgttttattttgttcaatcgCA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062472-exon-scaffold_364-1491911889:396625..398325 | TCONS_00062472-exon-scaffold_364-1491911889:396625..398325 | Clytia hemisphaerica | exon |
| TCONS_00062472-exon-scaffold_364-1510915933:396625..398325 | TCONS_00062472-exon-scaffold_364-1510915933:396625..398325 | Clytia hemisphaerica | exon |
| TCONS_00062472-exon-scaffold_364-1575043694:396625..398325 | TCONS_00062472-exon-scaffold_364-1575043694:396625..398325 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_364 | supercontig | scaffold_364:396625..398325 . |
Blast
The following BLAST results are available for this feature:
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