TCONS_00062469 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062469
Unique NameTCONS_00062469
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062469 ID=TCONS_00062469|Name=TCONS_00062469|organism=Clytia hemisphaerica|type=transcript|length=326bp
GGAAAGACGATGAAGAAATATATGTTTACAATCGATTCGAGAACATTAGC
GAAGCCAGAGAATGGATTGACAGGCATGCAGGTGTAAAGGTATCTGATGG
ATACAGTTTCACAGCAGTTGCTCGAAAACATGCTGGAAATGTAGAAGTTA
TCATACAAAAAGGTCGTGAAATCTATCAGATGAAAAAGAAAGAGTATTTT
GAGAAAcagaaagaaattgaaagattAAAAAGGAAGTTGAAACGATTTCC
GACTAAATTTTCGAAATTATCAGACTTCAAGAGACCTCTGGTATCATCTG
CAAATGAGACATAAAGtttctacaaa
Run BLAST on NCBI

protein sequence of TCONS_00062469-protein

>TCONS_00062469-protein ID=TCONS_00062469-protein|Name=TCONS_00062469-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
KDDEEIYVYNRFENISEAREWIDRHAGVKVSDGYSFTAVARKHAGNVEVI
IQKGREIYQMKKKEYFEKQKEIERLKRKLKRFPTKFSKLSDFKRPLVSSA
NET
Run BLAST on NCBI

transcript from alignment at scaffold_364:368872..369197

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062469 ID=TCONS_00062469|Name=TCONS_00062469|organism=Clytia hemisphaerica|type=transcript|length=326bp|location=Sequence derived from alignment at scaffold_364:368872..369197 (Clytia hemisphaerica)
tttgtagaaaCTTTATGTCTCATTTGCAGATGATACCAGAGGTCTCTTGA
AGTCTGATAATTTCGAAAATTTAGTCGGAAATCGTTTCAACTTCCTTTTT
aatctttcaatttctttctgTTTCTCAAAATACTCTTTCTTTTTCATCTG
ATAGATTTCACGACCTTTTTGTATGATAACTTCTACATTTCCAGCATGTT
TTCGAGCAACTGCTGTGAAACTGTATCCATCAGATACCTTTACACCTGCA
TGCCTGTCAATCCATTCTCTGGCTTCGCTAATGTTCTCGAATCGATTGTA
AACATATATTTCTTCATCGTCTTTCC

Coding sequence (CDS) from alignment at scaffold_364:368872..369197

>TCONS_00062469 ID=TCONS_00062469|Name=TCONS_00062469|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at scaffold_364:368872..369197 (Clytia hemisphaerica)
TTATGTCTCATTTGCAGATGATACCAGAGGTCTCTTGAAGTCTGATAATT
TCGAAAATTTAGTCGGAAATCGTTTCAACTTCCTTTTTaatctttcaatt
tctttctgTTTCTCAAAATACTCTTTCTTTTTCATCTGATAGATTTCACG
ACCTTTTTGTATGATAACTTCTACATTTCCAGCATGTTTTCGAGCAACTG
CTGTGAAACTGTATCCATCAGATACCTTTACACCTGCATGCCTGTCAATC
CATTCTCTGGCTTCGCTAATGTTCTCGAATCGATTGTAAACATATATTTC
TTCATCGTCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039136XLOC_039136Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062469-proteinTCONS_00062469-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062469-exon-scaffold_364-1491911889:368872..369197TCONS_00062469-exon-scaffold_364-1491911889:368872..369197Clytia hemisphaericaexon
TCONS_00062469-exon-scaffold_364-1510915933:368872..369197TCONS_00062469-exon-scaffold_364-1510915933:368872..369197Clytia hemisphaericaexon
TCONS_00062469-exon-scaffold_364-1575043694:368872..369197TCONS_00062469-exon-scaffold_364-1575043694:368872..369197Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_364supercontigscaffold_364:368872..369197 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.38128	4.54462	1.41786	1.53807	0	1.72124	0	1.76781	1.6309	0.644357	2.25535	0	1.30024	0	0.244357	1.25247	1.24344	0.25371	1.23486	0.729988	1.12296	1.73828	7.46683	3.07557	4.48396e-07	0	0	0	4.50867	3.49685
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062469 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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