TCONS_00062457 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062457
Unique NameTCONS_00062457
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length532

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062457 ID=TCONS_00062457|Name=TCONS_00062457|organism=Clytia hemisphaerica|type=transcript|length=532bp
GAACTAGGCTGATACATAGAGTGCATTTTATTTGGATATTCGTAGTATGC
TATAATAATATCCACACGATCCACATTTACATTGAGGTTAACACTACAAA
ATACTACAATTGTTAATGAATTTGTTTACTGGTTTTCAGTCCTTTCATGT
CAATTAATTCACAACACATTCTTTGAAAGTGAATTCTATCTTGACGCAAA
TACCACCAAAACATATATTCGCAGATCGTTCCACGTCTTGCAAAACGCAA
CCAGTTGTCCGTAGTTTCTTGATAGGAGAAAGACAATTCTCGATGACAGA
TTTCCAGCATTCTGCATACTCCTTGATATCATTCAGCGAATCTAGTTTGC
ACACAAATCCAGCAACTGATTTACACATAGCAATCTTAATTTTCCGTTCT
GtcgcttttttttctttaacgGCAGGTGGGGTGGATAGCGAACTGACCGG
CATCACCAGACACAGTATTAGAAATGCGGCACCGCCAAAAATGCGAACCA
TGGTAGCAGTATGTTGCACAGCTAGTTTGAAT
Run BLAST on NCBI

protein sequence of TCONS_00062457-protein

>TCONS_00062457-protein ID=TCONS_00062457-protein|Name=TCONS_00062457-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
FKLAVQHTATMVRIFGGAAFLILCLVMPVSSLSTPPAVKEKKATERKIKI
AMCKSVAGFVCKLDSLNDIKEYAECWKSVIENCLSPIKKLRTTGCVLQDV
ERSANICFGGICVKIEFTFKECVVN
Run BLAST on NCBI

transcript from alignment at scaffold_364:230779..231310

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062457 ID=TCONS_00062457|Name=TCONS_00062457|organism=Clytia hemisphaerica|type=transcript|length=532bp|location=Sequence derived from alignment at scaffold_364:230779..231310 (Clytia hemisphaerica)
ATTCAAACTAGCTGTGCAACATACTGCTACCATGGTTCGCATTTTTGGCG
GTGCCGCATTTCTAATACTGTGTCTGGTGATGCCGGTCAGTTCGCTATCC
ACCCCACCTGCcgttaaagaaaaaaaagcgaCAGAACGGAAAATTAAGAT
TGCTATGTGTAAATCAGTTGCTGGATTTGTGTGCAAACTAGATTCGCTGA
ATGATATCAAGGAGTATGCAGAATGCTGGAAATCTGTCATCGAGAATTGT
CTTTCTCCTATCAAGAAACTACGGACAACTGGTTGCGTTTTGCAAGACGT
GGAACGATCTGCGAATATATGTTTTGGTGGTATTTGCGTCAAGATAGAAT
TCACTTTCAAAGAATGTGTTGTGAATTAATTGACATGAAAGGACTGAAAA
CCAGTAAACAAATTCATTAACAATTGTAGTATTTTGTAGTGTTAACCTCA
ATGTAAATGTGGATCGTGTGGATATTATTATAGCATACTACGAATATCCA
AATAAAATGCACTCTATGTATCAGCCTAGTTC

Coding sequence (CDS) from alignment at scaffold_364:230779..231310

>TCONS_00062457 ID=TCONS_00062457|Name=TCONS_00062457|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_364:230779..231310 (Clytia hemisphaerica)
TTCAAACTAGCTGTGCAACATACTGCTACCATGGTTCGCATTTTTGGCGG
TGCCGCATTTCTAATACTGTGTCTGGTGATGCCGGTCAGTTCGCTATCCA
CCCCACCTGCcgttaaagaaaaaaaagcgaCAGAACGGAAAATTAAGATT
GCTATGTGTAAATCAGTTGCTGGATTTGTGTGCAAACTAGATTCGCTGAA
TGATATCAAGGAGTATGCAGAATGCTGGAAATCTGTCATCGAGAATTGTC
TTTCTCCTATCAAGAAACTACGGACAACTGGTTGCGTTTTGCAAGACGTG
GAACGATCTGCGAATATATGTTTTGGTGGTATTTGCGTCAAGATAGAATT
CACTTTCAAAGAATGTGTTGTGAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039124XLOC_039124Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062457-proteinTCONS_00062457-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062457-exon-scaffold_364-1491911889:230779..231310TCONS_00062457-exon-scaffold_364-1491911889:230779..231310Clytia hemisphaericaexon
TCONS_00062457-exon-scaffold_364-1510915933:230779..231310TCONS_00062457-exon-scaffold_364-1510915933:230779..231310Clytia hemisphaericaexon
TCONS_00062457-exon-scaffold_364-1575043694:230779..231310TCONS_00062457-exon-scaffold_364-1575043694:230779..231310Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_364supercontigscaffold_364:230779..231310 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.55495	2.45802	34.8799	30.8033	28.8783	31.2991	15.6906	23.4817	0	0	0	0	0	0	0	0.122181	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062457 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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