TCONS_00062453 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062453
Unique NameTCONS_00062453
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062453 ID=TCONS_00062453|Name=TCONS_00062453|organism=Clytia hemisphaerica|type=transcript|length=510bp
aaaaagaagaggaTAGGAGAGAAAAACGAGATATCGAATCaaggaaaaaa
atcataattcaTGGACTCGCTGAACAAATTGAAGAAACGAGAGAAGAAGA
TCAAGAAGAggacaaaaaggaaattgaggATCTGCTCAAAGATATCGGCA
TCCGCGACATCAAACCAACGCATCAACATTGTATTGGGTTCAAACATGAA
AATGGGCCAAGGAAAAAGCGTCCAATAAAGGTGACCttgcaaaatgaaaa
agaaaaagaaaaaaatatgagcaatctaaaagccttaaaaaagttGAAGT
GGCTTGGATATCATTTAAGCATCACCGATGATttcaccatcaacgaaaga
agaaaaatcaaagagatgTGCGAAAAAGCTAAGAAATGGAACTCCGAATG
CAATGGTCATTTCATTTGGCGTGTGAGAGGAAGTCCCAGAACAGATAACC
TTcgcttgataaaaacaaacaaactttgccaaccaaaagaccggggacga
tatttttacc
Run BLAST on NCBI

protein sequence of TCONS_00062453-protein

>TCONS_00062453-protein ID=TCONS_00062453-protein|Name=TCONS_00062453-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
KEEDRREKRDIESRKKIIIHGLAEQIEETREEDQEEDKKEIEDLLKDIGI
RDIKPTHQHCIGFKHENGPRKKRPIKVTLQNEKEKEKNMSNLKALKKLKW
LGYHLSITDDFTINERRKIKEMCEKAKKWNSECNGHFIWRVRGSPRTDNL
RLIKTNKLCQPKDRGRYFY
Run BLAST on NCBI

transcript from alignment at scaffold_364:185387..185896

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062453 ID=TCONS_00062453|Name=TCONS_00062453|organism=Clytia hemisphaerica|type=transcript|length=510bp|location=Sequence derived from alignment at scaffold_364:185387..185896 (Clytia hemisphaerica)
ggtaaaaatatcgtccccggtcttttggttggcaaagtttgtttgttttt
atcaagcgAAGGTTATCTGTTCTGGGACTTCCTCTCACACGCCAAATGAA
ATGACCATTGCATTCGGAGTTCCATTTCTTAGCTTTTTCGCAcatctctt
tgatttttcttctttcgttgatggtgaaATCATCGGTGATGCTTAAATGA
TATCCAAGCCACTTCaacttttttaaggcttttagattgctcatattttt
ttctttttctttttcattttgcaaGGTCACCTTTATTGGACGCTTTTTCC
TTGGCCCATTTTCATGTTTGAACCCAATACAATGTTGATGCGTTGGTTTG
ATGTCGCGGATGCCGATATCTTTGAGCAGATcctcaatttcctttttgtc
cTCTTCTTGATCTTCTTCTCTCGTTTCTTCAATTTGTTCAGCGAGTCCAt
gaattatgatttttttccttGATTCGATATCTCGTTTTTCTCTCCTAtcc
tcttcttttt

Coding sequence (CDS) from alignment at scaffold_364:185387..185896

>TCONS_00062453 ID=TCONS_00062453|Name=TCONS_00062453|organism=Clytia hemisphaerica|type=CDS|length=507bp|location=Sequence derived from alignment at scaffold_364:185387..185896 (Clytia hemisphaerica)
gtaaaaatatcgtccccggtcttttggttggcaaagtttgtttgttttta
tcaagcgAAGGTTATCTGTTCTGGGACTTCCTCTCACACGCCAAATGAAA
TGACCATTGCATTCGGAGTTCCATTTCTTAGCTTTTTCGCAcatctcttt
gatttttcttctttcgttgatggtgaaATCATCGGTGATGCTTAAATGAT
ATCCAAGCCACTTCaacttttttaaggcttttagattgctcatatttttt
tctttttctttttcattttgcaaGGTCACCTTTATTGGACGCTTTTTCCT
TGGCCCATTTTCATGTTTGAACCCAATACAATGTTGATGCGTTGGTTTGA
TGTCGCGGATGCCGATATCTTTGAGCAGATcctcaatttcctttttgtcc
TCTTCTTGATCTTCTTCTCTCGTTTCTTCAATTTGTTCAGCGAGTCCAtg
aattatgatttttttccttGATTCGATATCTCGTTTTTCTCTCCTAtcct
cttcttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039120XLOC_039120Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062453-proteinTCONS_00062453-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062453-exon-scaffold_364-1491911889:185387..185896TCONS_00062453-exon-scaffold_364-1491911889:185387..185896Clytia hemisphaericaexon
TCONS_00062453-exon-scaffold_364-1510915933:185387..185896TCONS_00062453-exon-scaffold_364-1510915933:185387..185896Clytia hemisphaericaexon
TCONS_00062453-exon-scaffold_364-1575043694:185387..185896TCONS_00062453-exon-scaffold_364-1575043694:185387..185896Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_364supercontigscaffold_364:185387..185896 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.70667	2.21897	3.5547	1.95846	0.498774	0.422769	0.319152	0.828618	0.539703	0.674555	0.477657	0.926598	0.705502	1.41653	1.09376	0.359122	0.442409	0.658073	0.783209	0.67368	0.11396	0.667027	0.58064	0.368594	0.617756	0.137716	0.969708	0.728396	1.21693	1.09776
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062453 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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