TCONS_00062448 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062448
Unique NameTCONS_00062448
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length748

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062448 ID=TCONS_00062448|Name=TCONS_00062448|organism=Clytia hemisphaerica|type=transcript|length=748bp
TCAGAATTTACTCCAGGAACATAACAATCCAAAAATAGCAAAACTTTTGA
AAGGTTTGCTAATTGTTCTTTTCAACACTTGCTCTTTTTGCCACCATGAT
CTTGAAAGTCATTTAATGTTCGTTTTTGCAGTCCAATCTTTTCATAGTTT
CCATAGAGTTGTTCTGCGGAGTATTGGTAGCGTGATGATCCCGGGATATT
TCCACAAGTAGATAAGGTTCCAGAGGGTAGAGGTCTGTAATTCTGGAAGC
CTGAAAAGGTTGCAAAATTTCCAGTCCTAAAAGCTACAGAAGGTAGATTA
GGAATTGGCTTATGATAAGAGTACACTGGTGATTCTGGCATAATTGGCGG
GCTAGGCATCAAAGCAGGTGGACTTGATGGTAGAtggtattttctttcaa
atggctGCTGAGGgaccaaattttctttcagttCATCAAGATTAACAGGA
GCAGTATAGTACACATTTGTGTAGTAAACTTTAGACTTTCTCGTAATCTT
TAACTTAGGTTTAAGGTCCTCACTCACAACTTGCCGTTTCACATTCCATC
CTTTAAATTTATTTACGTGTTGACGAAAGGTTTTCAAGCAGGCTCCAGTC
AAGTGCTCTTTTGGATTTAGTAATTGAACCATGTTGCAAGATCCAGGCTC
AAGGACTCGAGCCTCCATTTTGGCACGTTCTAAATCAAACTTCTTGATTG
CATCTTCTTCTCTCTGTAACGCAGCCTTGGATTTTTCAGACCAACCGT
Run BLAST on NCBI

protein sequence of TCONS_00062448-protein

>TCONS_00062448-protein ID=TCONS_00062448-protein|Name=TCONS_00062448-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
GWSEKSKAALQREEDAIKKFDLERAKMEARVLEPGSCNMVQLLNPKEHLT
GACLKTFRQHVNKFKGWNVKRQVVSEDLKPKLKITRKSKVYYTNVYYTAP
VNLDELKENLVPQQPFERKYHLPSSPPALMPSPPIMPESPVYSYHKPIPN
LPSVAFRTGNFATFSGFQNYRPLPSGTLSTCGNIPGSSRYQYSAEQLYGN
YEKIGLQKRTLNDFQDHGGKKSKC
Run BLAST on NCBI

transcript from alignment at scaffold_364:80929..81676

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062448 ID=TCONS_00062448|Name=TCONS_00062448|organism=Clytia hemisphaerica|type=transcript|length=748bp|location=Sequence derived from alignment at scaffold_364:80929..81676 (Clytia hemisphaerica)
ACGGTTGGTCTGAAAAATCCAAGGCTGCGTTACAGAGAGAAGAAGATGCA
ATCAAGAAGTTTGATTTAGAACGTGCCAAAATGGAGGCTCGAGTCCTTGA
GCCTGGATCTTGCAACATGGTTCAATTACTAAATCCAAAAGAGCACTTGA
CTGGAGCCTGCTTGAAAACCTTTCGTCAACACGTAAATAAATTTAAAGGA
TGGAATGTGAAACGGCAAGTTGTGAGTGAGGACCTTAAACCTAAGTTAAA
GATTACGAGAAAGTCTAAAGTTTACTACACAAATGTGTACTATACTGCTC
CTGTTAATCTTGATGaactgaaagaaaatttggtcCCTCAGCagccattt
gaaagaaaataccaTCTACCATCAAGTCCACCTGCTTTGATGCCTAGCCC
GCCAATTATGCCAGAATCACCAGTGTACTCTTATCATAAGCCAATTCCTA
ATCTACCTTCTGTAGCTTTTAGGACTGGAAATTTTGCAACCTTTTCAGGC
TTCCAGAATTACAGACCTCTACCCTCTGGAACCTTATCTACTTGTGGAAA
TATCCCGGGATCATCACGCTACCAATACTCCGCAGAACAACTCTATGGAA
ACTATGAAAAGATTGGACTGCAAAAACGAACATTAAATGACTTTCAAGAT
CATGGTGGCAAAAAGAGCAAGTGTTGAAAAGAACAATTAGCAAACCTTTC
AAAAGTTTTGCTATTTTTGGATTGTTATGTTCCTGGAGTAAATTCTGA

Coding sequence (CDS) from alignment at scaffold_364:80929..81676

>TCONS_00062448 ID=TCONS_00062448|Name=TCONS_00062448|organism=Clytia hemisphaerica|type=CDS|length=675bp|location=Sequence derived from alignment at scaffold_364:80929..81676 (Clytia hemisphaerica)
GGTTGGTCTGAAAAATCCAAGGCTGCGTTACAGAGAGAAGAAGATGCAAT
CAAGAAGTTTGATTTAGAACGTGCCAAAATGGAGGCTCGAGTCCTTGAGC
CTGGATCTTGCAACATGGTTCAATTACTAAATCCAAAAGAGCACTTGACT
GGAGCCTGCTTGAAAACCTTTCGTCAACACGTAAATAAATTTAAAGGATG
GAATGTGAAACGGCAAGTTGTGAGTGAGGACCTTAAACCTAAGTTAAAGA
TTACGAGAAAGTCTAAAGTTTACTACACAAATGTGTACTATACTGCTCCT
GTTAATCTTGATGaactgaaagaaaatttggtcCCTCAGCagccatttga
aagaaaataccaTCTACCATCAAGTCCACCTGCTTTGATGCCTAGCCCGC
CAATTATGCCAGAATCACCAGTGTACTCTTATCATAAGCCAATTCCTAAT
CTACCTTCTGTAGCTTTTAGGACTGGAAATTTTGCAACCTTTTCAGGCTT
CCAGAATTACAGACCTCTACCCTCTGGAACCTTATCTACTTGTGGAAATA
TCCCGGGATCATCACGCTACCAATACTCCGCAGAACAACTCTATGGAAAC
TATGAAAAGATTGGACTGCAAAAACGAACATTAAATGACTTTCAAGATCA
TGGTGGCAAAAAGAGCAAGTGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039115XLOC_039115Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062448-proteinTCONS_00062448-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062448-exon-scaffold_364-1491911889:80929..81676TCONS_00062448-exon-scaffold_364-1491911889:80929..81676Clytia hemisphaericaexon
TCONS_00062448-exon-scaffold_364-1510915933:80929..81676TCONS_00062448-exon-scaffold_364-1510915933:80929..81676Clytia hemisphaericaexon
TCONS_00062448-exon-scaffold_364-1575043694:80929..81676TCONS_00062448-exon-scaffold_364-1575043694:80929..81676Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_364supercontigscaffold_364:80929..81676 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.95171	7.83072	4.84421	1.96864	2.57415	3.08627	3.30033	4.19886	2.38506	2.95428	2.53406	2.93706	3.28318	3.95516	1.00914	1.2434	2.66824	3.29196	0.139939	0.439309	2.29104	2.23497	8.75447	9.74301	44.8752	44.8434	2.97839	2.2154	5.11396	6.40125
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062448 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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