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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062413 ID=TCONS_00062413|Name=TCONS_00062413|organism=Clytia hemisphaerica|type=transcript|length=4155bpRun BLAST on NCBI protein sequence of TCONS_00062413-protein >TCONS_00062413-protein ID=TCONS_00062413-protein|Name=TCONS_00062413-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1143bp MLNKIYPKEEMELSDLDPLPSNEEKNELSGGVDEEGFPQQFDGASSYTSGRun BLAST on NCBI transcript from alignment at scaffold_364:217948..240628- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062413 ID=TCONS_00062413|Name=TCONS_00062413|organism=Clytia hemisphaerica|type=transcript|length=22681bp|location=Sequence derived from alignment at scaffold_364:217948..240628- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_364:217948..240628- >TCONS_00062413 ID=TCONS_00062413|Name=TCONS_00062413|organism=Clytia hemisphaerica|type=CDS|length=48048bp|location=Sequence derived from alignment at scaffold_364:217948..240628- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062413 vs. Swiss-Prot (Human)
Match: TRPA1 (Transient receptor potential cation channel subfamily A member 1 OS=Homo sapiens GN=TRPA1 PE=1 SV=3) HSP 1 Score: 338.961 bits (868), Expect = 5.753e-97 Identity = 316/1124 (28.11%), Postives = 542/1124 (48.22%), Query Frame = 2
Query: 215 IQAASEGNLLRVQRFITE--LKRGDYKRFENERDQLFKGFSALHMAARYDKVDIVNFLLDNEAPIEQKDEEDE--NTPLLLAIKYNCDETAKQLITRGASVCSCNKYGTYALHFAARRGNKDLCEMILNNPCCKLDEQIDKSGGSALHSAMLSGNVEVVALLITRGADICHGNNEGEQPIHLAAAEDHSDIIVMLAKGVLSKEPNTNLHRELQIQFVNYGTGEKDTALHIAAQGGYIETVKTLISIGAKVNVRTDTDQTPLHLAAIGGQLEVVRYLLMNNAK----VGLRDNDQMTPLHKAAQFGRLETLKFLLEXXXXXXXXXXXXFTPLMCAVWKGHNHVVEYLLERNPARIDRLLGINDINSRCVLHLAIEED-CLSTL--EMXXXXXXXXXINDTDKDYKSCVHYAAEKPVDDMLTMLINNGASIDVSDIDEKTPLHTASELGNLSCVKVLAKEAPG--IINATDAKGMSALHLAAMRGHIKVSETLIELGAEISSRDEWNWTPLDYAARHGYSKTLEVLIENEAK-VDAMGTNDATPLHHASQYGHVDCIKVLLDNGASLKAANNEGKTCLDLAVESYQKEACLALVNHERWEQMMR---HVYPSQPPPMEKLIRLAPDIAEVVLNKCVRKEDMKTKGRTEYNTIYDFGYLD-------KLPDEKNLEAPYFGPSVMIKYRRSNLLQHPLTVRLINYKWARMGRWLYIGSLTSYILFVALLTSLLVVEK---------------DHDQDLKEKNQTTTNFCDNRPKDKIFVGIVPWLTLGVACFQIIKECIQCLYLGKKYLKDVVNWFEFILYGSTFSFMLPFIMCQVGGHENYKFLYDLKWIAGAISILCAWFNFLLYLKRAPFFGIYVLMFIEVLNTLLVVLAVFSILILAFALSFYCLFKLPYELADDDDGNTAFNHLGTGIVRTIVMMIGELDYRDTFTEKFNDNTKKYLPYKGVSYXXXXXXXXXXXXXXXXXXXGLAIGDIEAVRNNAYIRMLRGQVRILEILERTYPKFILRRIHTKNSEV--EKPKRYMNNWERFMDWISTLDFDALQEDQQDMTSREIRMREQITNQEKELE----KTKSKMRVLTSAIEEQAEMMRVMVATIDKIPKHE 3451
++ EG+ +Q F + LKR D + D F LH AA +++++ + ++ +E E D+ NTPL A++ N E+ K L++RGA+ N LH A + N ++ +++L + ++ + ++G +A+ A + N E + +L+ +GA C N G PIH AA + + + +L R+L I F+N G K T LH+A Q G +E +K + GA+++ T +H AA G E+V+ ++ + + V D T LH+A+ F E +L+ GA + D +G +PL+ A ++V LL + A++D I D R LHL +++ L L E + + K+L+ D D D + +HYA + + L+ SI D+K+PLH A+ G ++ + L ++ ++N D GM+ LHLAA GH KV + L++ GA S D WT L +A+ GY++T++V+++ K D + + T LH A++ GH + +LL + A + N + + L LA+ + +KE L ++ +RW++ ++ H P P+ ++I P+ +V+L+ C+ + K +Y Y+F YL K P + + P + M++ R LL HP+ + KW G ++ +L SY L + +T L+V K DH + L N C I+ +L+ + F KE Q + Y D+ N E+I+Y + F+LP + ++ H L+W GAI++ W NFLLYL+R GI+++M +L TLL VF L+LAF LSFY L L F+ I++T MM+G+++YR++F E + N L + +S+ V F I + IV+MNLL+GLA+GDI V+ +A ++ + QV + LE+ P + LR++ K++ V KP+ + F T + +R++I N +K LE K K +++ LT +E+Q E++++++ ++ I + E
Sbjct: 36 LKVVFEGSAYGLQNFNKQKKLKRCD------DMDTFF-----LHYAAAEGQIELME-KITRDSSLEVLHEMDDYGNTPLHCAVEKNQIESVKFLLSRGANPNLRNFNMMAPLHIAVQGMNNEVMKVLLEHRTIDVNLE-GENGNTAVIIACTTNNSEALQILLKKGAKPCKSNKWGCFPIHQAAFSGSKECMEI----ILRFGEEHGYSRQLHINFMNNG---KATPLHLAVQNGDLEMIKMCLDNGAQIDPVEKGRCTAIHFAATQGATEIVKLMISSYSGSVDIVNTTDGCHETMLHRASLFDHHELADYLISVGADINKIDSEGRSPLILATASASWNIVNLLLSKG-AQVD----IKDNFGRNFLHLTVQQPYGLKNLRPEFMQMQQIKELVMDEDNDGCTPLHYACRQGGPGSVNNLLGFNVSIHSKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAKNGHDKVVQLLLKKGALFLS-DHNGWTALHHASMGGYTQTMKVILDTNLKCTDRLDEDGNTALHFAAREGHAKAVALLLSHNADI-VLNKQQASFLHLALHNKRKEVVLTIIRSKRWDECLKIFSHNSPGNKCPITEMIEYLPECMKVLLDFCML-HSTEDKSCRDYYIEYNFKYLQCPLEFTKKTPTQDVIYEPLTALNAMVQNNRIELLNHPVCKEYLLMKWLAYGFRAHMMNLGSYCLGLIPMTILVVNIKPGMAFNSTGIINETSDHSEILDTTNSYLIKTC----------MILVFLS---SIFGYCKEAGQIFQQKRNYFMDISNVLEWIIYTTGIIFVLPLFV-EIPAH--------LQWQCGAIAVYFYWMNFLLYLQRFENCGIFIVMLEVILKTLLRSTVVFIFLLLAFGLSFYILLNL----------QDPFSSPLLSIIQTFSMMLGDINYRESFLEPYLRNE---LAHPVLSFAQLVSFTIFVPIVLMNLLIGLAVGDIAEVQKHASLKRIAMQVELHTSLEKKLPLWFLRKVDQKSTIVYPNKPRSGGMLFHIFCFLFCTGE-----------------IRQEIPNADKSLEMEILKQKYRLKDLTFLLEKQHELIKLIIQKMEIISETE 1079 The following BLAST results are available for this feature:
BLAST of TCONS_00062413 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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