TCONS_00062408 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062408
Unique NameTCONS_00062408
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1818

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062408 ID=TCONS_00062408|Name=TCONS_00062408|organism=Clytia hemisphaerica|type=transcript|length=1818bp
CagaaaataaacaatttctCACATGAGTTCAAGCATGAGTTTCATTTCAG
TGCATCGCACAAGCACGTAACTAAAGTGAAGtgattaaaatcaataaaat
acccGAGACAATAAGACAATAAAAAGTTTGtataaaaaaagattattaaC
CAATCAATGCAATGGCATAATAAAGTGGTTTTCATCATCTGTGATAATGC
ATAGAGGTAGTCATCATAAAAGCAAAGAATTAGCTCGAAAATACAGTTGA
GAATCAGAATCATTTCCATATCAAGACAGCTTAAGAAACGCAACAATGGC
TTTTGGAAACAGTTCTACATTAAACATGACGACATTAAACAACACTACAG
AAAATACTGTATTCGAATGTTTCAAGCTACCCATTACAGTTGGGAATGAT
ACGTTTTGTGGTAATAATTTAACAAGATGGGAATCTAGATATAGTGAGGA
TGGTTTGAAAGCTATGGTAATAGTGCCAGCAATTGTAGCTTTGCTTGTCC
TCATCTTCAGATTGTGGCGAAGTAAATTTGCTGTCCGAGAAAATCATGAA
ATCATGATGGAGTATGAAAGACGTTTATTCAAATTTAGGAAGAATCATAA
ACTTGAAAGAACTGATTCAATGATCAGCAAAGAATTTGAGATGTATCGAG
TTGAATTTGATATCAAAGACGAGAGCGAGAATGGAGNTATGATTAGCCGA
GAATTTGAGATGTATCGAGTTGAATTTGATATCAAAGACGAGAGCGAGAA
TGGAGATAAAGATAAAATCAAATTGAATTGTATTGTGAGATGTTTCCAGG
GGATCGGCCGGTGTTTCAAAGTGGAAGATTTAGGGTGGAAATTCATATCA
CTCAAAACTTTCGTAACAATCAAATGTCTGACGTATGTTAAACAAGCTTT
GGAAGTTCTGGATGTGATCCTGGATTGCTTCTTGCTATACCAATTAGAAT
CTGGTCAAATATTCGATAATGTTGTTCACCGAAACGCTTACGTCACTAAT
GTAATTTACGCACTCATCTGGTTAAGCATCATGGTCCAATTTTGTTCTTG
TGATTGTTGTCCAGTGGGACAATACGATGTTTTTATGAAAGATATGAAAT
CCTTCATAACATTTTTGTTCATAGGTTCTATTCAGCTTATCTTGGAGTAT
TTTTATATGGACAAATTTGTCAACCGAAAAACCGATTGGTATTTGTTTGT
GAAGAGTGCAATGCAACTGGTCATGACTTGCTGGACTATTTATTCAGCTA
TTCAAAATGCAAAACGTGCTCGTTTGGTGAAGATTATGGACAAGGATGGA
AATGAAGATTCAGGTAATGTCGTTAATGATATCATCGAACAACGTAAACA
GGATGGTTTGGAAATCGATTCTGAACTGCTTGCAGCTCAGGCATTACAAC
AAATGTGTAAAGAAAATATTCAGAAGCTTGATGAACTGGAGAATCAACAT
CGAAGACGGGCCAACATGAAACCACTCGACCCTAACCAAGAGAAAGACGG
ATCAGTCAAGATGAAGTTTTTTTCCTATATGATGATCCCAATCGCCATGG
CAACCATGTGTCGTGTCATTGGTTCCACTTACCAATACGGTACCGGCAAA
ATTGACCGATCCTGTTTTACTGTTGAGGATGGAGGAAAGATATTCCAAAG
TCCTTTTGATTCAGGCTGTATGAGAGGAATAGATTACCTTGTGGTGATTC
TAACATTCACGCCTTTGGCAACAATTCAAATTGTTTACGCTGTCATACAT
GTTTGGTTTCGGTTGAACCCTCGTTCTTCTACACTGGAGAAATATTTCTT
CTGAAAACTAATTACCAT
Run BLAST on NCBI

transcript from alignment at scaffold_364:149709..155595-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062408 ID=TCONS_00062408|Name=TCONS_00062408|organism=Clytia hemisphaerica|type=transcript|length=5887bp|location=Sequence derived from alignment at scaffold_364:149709..155595- (Clytia hemisphaerica)
CAGAAAATAAACAATTTCTCACATGAGTTCAAGCATGAGTTTCATTTCAG
TGCATCGCACAAGCACGTAACTAAAGTGAAGTGATTAAAATCAATAAAAT
ACCCGAGACAATAAGACAATAAAAAGTTTGTATAAAAAAAGATTATTAAC
CAATCAATGCAATGGCATAATAAAGTGGTTTTCATCATCTGTGATAATGC
ATAGAGGTAGTCATCATAAAAGCAAAGAATTAGCTCGAAAATACAGTTGA
GAATCAGAATCATTTCCATATCAAGACAGCTTAAGAAACGCAACAATGGC
TTTTGGAAACAGTTCTACATTAAACATGACGACATTAAACAACACTACAG
AAAATACTGTATTCGAATGTTTCAAGCTACCCATTACAGTTGGGAATGAT
ACGTTTTGTGGTAATAATTTAACAAGATGGGAATCTAGATATAGTGAGGA
TGGTTTGAAAGCTATGGTAATAGTGCCAGCAATTGTAGCTTTGCTTGTCC
TCATCTTCAGATTGTGGCGAAGTAAATTTGCTGTCCGAGAAAATCATGAA
ATCATGATGGAGTATGAAAGACGTTTATTCAAATTTAGGAAGAATCATAA
ACTTGAAAGAACTGATTCAATGATCAGCAAAGAATTTGAGATGTATCGAG
TTGAATTTGATATCAAAGACGAGAGCGAGAATGGAGNTATGATTAGCCGA
GAATTTGAGATGTATCGAGTTGAATTTGATATCAAAGACGAGAGCGAGAA
TGGAGATAAAGATAAAATCAAATTGAATTGTATTGTGAGATGTTTCCAGG
GGATCGGCCGGTGTTTCAAAGTGGAAGATTTAGGGTGGAAATTCATATCA
CTCAAAACTTTCGTAACAATCAAATGTCTGACGTATGTTAAACAAGCTTT
GGAAGTTCTGGATGTGATCCTGGATTGCTTCTTGCTATACCAATTAGAAT
CTGGTCAAATATTCGATAATGTTGTTCACCGAAACGCTTACGTCACTAAT
GTAATTTACGCACTCATCTGGTTAAGCATCATGGTCCAATTTTGTTCTTG
TGATTGTTGTCCAGTGGGACAATACGATGTTTTTATGAAAGATATGAAAT
CCTTCATAACATTTTTGTTCATAGGTTCTATTCAGCTTATCTTGGAGTAT
TTTTATATGGACAAATTTGTCAACCGAAAAACCGATTGGTATTTGTTTGT
GAAGAGTGCAATGCAACTGGTCATGACTTGCTGGACTATTTATTCAGCTA
TTCAAAATGCAAAACGTGCTCGTTTGGTGAAGATTATGGACAAGGATGGA
AATGAAGATTCAGGTAATGTCGTTAATGATATCATCGAACAACGTAAACA
GGATGGTTTGGAAATCGATTCTGAACTGCTTGCAGCTCAGGCATTACAAC
AAATGTGTAAAGAAAATATTCAGAAGCTTGATGAACTGGAGAATCAACAT
CGAAGACGGGCCAACATGAAACCACTCGACCCTAACCAAGAGAAAGACGG
ATCAGTCAAGATGAAGTTTTTTTCCTATATGATGATCCCAATCGCCATGG
CAACCATGTGTCGTGTCATTGGTTCCACTTACCAATACGGTACCGGCAAA
ATTGACCGATCCTGTTTTACTGTTGAGGATGGAGGAAAGATATTCCAAAG
TCCTTTTGATTCAGGTTGTATGAGAGGAATAGATTACCTTGTGGTGATTC
TAACATTCACGCCTTTGGCAACAATTCAAATTGTTTACGCTGTCATACAT
GTTTGGTTTCGGTTGAACCCTCGTTCTTCTACACTGGAGAAATATTTCTT
CTGAAAACTAATTACCATGAACACCGATACTTTTAGATAGTGTGTTGGAT
GGACTAATTCAATTTTTTGCTTCGTTTTTGTAAGATTTATGTATAAACAA
TTATTTCTTTTGTTATTTCAAAACTTTTTGTTTAAATTGTGACACTTTAA
TCTTAGCTCTGTTTTAGCCTCATAACTTCAAAAATTATAAATATAAACAT
TTTCGAAAAAATTTTTTTTCATGAATTAAATAAAAGGTATTGAAAAACCG
TCTTTTGTTTGTCTTCATGTTTTTTTATAAGAAAAATTTAGTAAGAGTAA
ATTTTGAATGCTGGTCATGTTCTAGAAACATCTGACATGATCACTAAATC
ACTAAAAATTTTCAAGAATGATATCTGGCAGGGTCGGAAAATCGCAAAAA
AATCGGTGAAATTCATACCGTTACAGTACATTTTTCTCAAACTTTCAAAC
CTTTACGAGAAGAAAATCAGCGATTCTAAAAATCAAGCATTTCAAGAACA
TTTTAGCAATAATCATTTAGGCGAAAATTATCAAAAAGGAGCGATCTATG
GACCGTTCGTAGAAAAACTATTTTTCAAGCCCGTTCTCATGGCTACTAAA
AATAAAGATGGAGATTCATAGAAAACCCAATCAGGAGGTTCAAATACTTT
GTATGCAAATAATAAATTCCTAGAATTGTGGTCACTAAGTAACACGTGTT
TTTTTATACAAACTAGTAATTTTGGCTCCATCTTTGGACGTTTCAGTATT
ATGTTTTCAAAATTTTAAACTTACATTTCATAATTTGAAAGTGTGTATGT
GGCATGTATGTATAAACATCATTCCACTGATAGAGTTTACAGTGTTGGAT
TTTAAAACAAGAAAAAGTCAAGCTTTAAATTTCACTCATGTCCAGTACTG
AGGAAAATTTGCGCTGGTCTCCGGCGAAAGACCTTTGCAAATGATTTACA
TCATTATCTCCCTAATATACCATTTTCGACTAAAGTTTCCAGGATAATGT
GGTGGTCCAATTTTAGTAGCCATTCCCGGGAGTAATACAGTGGTCCAATA
TCATCAGTTTTTCTCCGGCGAAACGCAGAGGTCAAAACGTGAATAGATAA
TAGATATCTTGGTTGACGGTGGCTCGAGCGTCCAGGATAAGTAATTTATC
TCCGGGGAAATTCGGTGGTCCAAAATCAGTCCATGGTCTGATTTTTGATC
AACGAATTTTCCTAGAAACTTATTACTTATTTTGGACGCCCGAGCCAAGG
TCAACTAAAATTTGGTGTTATCTTCAATATCTCCTTCCAATTTGATCAGC
GCATTTCCCCGAAAATTTGTACTGATTTTGAACCAACGAATTTCCCCAGA
GGGTAATTACTTATTTTGGACTCCCGAGCAGCGGTAAACCAAAATCTGCT
GTGTCTGTGTGTGTATGTGTGTCTCTAATGTTTTGCATATTTATTTCGTG
TTTTTATTAAGGAGAATAGACTTATGGAAAGAATAGTCATACTGTAATTT
TTTGAATTTTATCTCCCTAATATTTTTTCAAAATCGATTTCCAATATTTA
GGAGATAAATTCTGTCAAACTCAAAGTACAATTCTGGTTTTCACCAGGTG
TACTGGACATAGCTCTTAAATCTAAGCCGCTGTTGGATGACGGATTGTAT
CTAGCGTTTTCTTTGTTTTTACCCGGCGTTAGATTTTATTTGCAATCTGG
CGTTTGTGTGAAAACCACGCTGGTCACACGTTTTAAATTGGAAATAAGTT
GTTTTATCTCCCATCCGAGAGTTTTCTTTCTAGCCCCTTCGGGAGTTCAA
AATCGATGGTNTAATGGGAAATAAGTTGTTTTATCTCCCATCCGAGAGTT
TTCTTTCTAGCCCCGTCGGGAGTTCAAAATCGATGGTTTACACATCCCAG
CATTTGGCATATCGTAATTGGTTGCAAAGGAATAGTTTTGATAGTGTTTC
TTTTGTTTGGCACTTATTTTCGTACACGCAACCGGGTTTTTTTGCCGAAA
AGAGTTTACAGTCGGCAGAGTTACCAGTCTTAAGGGCTCTGACCATAGTC
GGAAAATTGATTTTAGTATTTGAACATAAAAGTTATGTTTTAGGTTCTTT
AACACTTTTAACAAAGAATTGCCTTTTTAAATTGTCTTTTAATCAAATCC
CTTATGAGTAATTAAGAATTTAATTGCAAAAATGACGTTATGAACTTTAA
AAAGAATATGTTGCATCACCTTCTTTTATAAAAAGTGTTAAGTTTTAATT
GGTAATTACCCTTTTTGTTTCGAAGTTCTTTCAAACTTTCTGCAAAGAAT
TGAACTGTTTTAGATCTTTCGGAAAAACATTCTAAATTAATGCATCACAA
GTTATGGCTGTTTTTCTATCAAAAATTGGGATCGAAAACTGGTCAAAAAC
CACAATTTTCGAGATTTTGAAGCAAATAAGCATTTAGAAAAATTTTCCGA
AAAAATAATTTTAGTTAGGTAAAAGATACACCATCTAGCGCAATAAAAAT
TTCAAAATGTTTTTTCTTCGCCGGAAATAAGCTCTTCAAAGTTGAAATAA
TCTTCTTCGCAAAAGTCTTCATTTTCTTCTTCATCAAATTTTCGCATTGC
GATTCTTAAATTTTCAGACTCACGGATAATTGGCCTAACAGAATATGTAT
AACATGCCACAGTTTTGGGGGCTACATCAAGTAGAACTTTATATTTTGTA
AGTGGCAAACTGCCGAGGTAAAGCAGCGAAACCTGGCTGCTCTCGTACTT
GGTTTACGTCATCTTTTGGTCTTTTGTTTTTGTTTCCTATCTCTTTTGTC
TCGTTTCTGTTGCTCTTGGTTTCCTTTGGGTTTGTGTCATTCATTTTGTC
TCGTTTATTATACGCATTTTCTTTTATTAAAGTAATTAATTTGTACATAC
AGTAATTATCTAGTAATTAATATAAAAACTAGGAGTTGTCAGTAGAAATC
ATTCATTCACATCTGAATACTGTAAGCAAGAGAGATGTTGAATGATGAAG
TGATATAGTTCACAAACGTTTTGATATTTTTCCACACTTGTTGAATGAGA
CTGCTGACGCCTTCTAGCCCCAAAACATTGTCAATTTAGTGAGTATTATT
TATCTATGTAGCATTAGTATGTTAGATTTCAGTTTAGTTCATTTGTTTTT
CTGAGTGCCTTTTTTCTGTTCTACAGTACCTGGATTAGAGATTTTCTATA
GTTTTGTACATTTTTCTAAAGTAGTTTTGTATTTTTTGTTCTAGCCTATC
GTTTCAATATACCGTTTTATCGGAGCGATTGAGTCCATTTCCTGATTTCC
TGAGATAAGTTTCTTCGGAATCAACAGTTGAGAATCAGAATTATTTCCAT
ATCAAGACAGCTTAAGAAACGCAACAATGGCTTTTGGAAACAGTTCTACA
TTAAACATGACGACATTAAACAACACTACAGAAAATCCTGCATTCGAATG
TTTCAAGCTACCCATTACAGTTGGGAATGATACGTTTTGTGGTAATTTAA
CAAGATGGGAATCGAGATATAGTGAGGATGGTTTGAAAGCTATGGTAATA
GTGCCAGCAATTGTAGCTTTGCTTGTCCTCTTCTTCAGATTGTGGCGAAG
TAAATTTGCTGTCCGAGAAAATCATGAAATCATGATGGAGTATGAAAGAC
GTTTATTCAAATTTAGGAAGAATCATAAACTTGAAAGAACTGATTCAATG
ATCAGCAAAGAATTTGAGATGTATCGAGTTGAATTTGATATCAAAGACGA
GAGCGAGAATGGAGATAAAGATAAAATCAAATTGAATTGTATTGTGAGAT
GTTTCCAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGAGGATG
GAGGAAAGATATTCCAAAGTCCTTTTGATTCAGGCTGTATGAGAGGAATA
GATTACCTTGTGGTGATTCTAACATTCACGCCTTTGGCAACAATTCAAAT
TGTTTACGCTGTCATACATGTTTGGTTTCGGTTGAACCCTCGTTCTTCTA
CACTGGAGAAATATTTCTTCTGAAAACTAATTACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039097XLOC_039097Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062408-exon-scaffold_364-1575043694:153932..155595TCONS_00062408-exon-scaffold_364-1575043694:153932..155595Clytia hemisphaericaexon
TCONS_00062408-exon-scaffold_364-1575043694:149709..149862TCONS_00062408-exon-scaffold_364-1575043694:149709..149862Clytia hemisphaericaexon
TCONS_00062408-exon-scaffold_364-1510915933:153932..155595TCONS_00062408-exon-scaffold_364-1510915933:153932..155595Clytia hemisphaericaexon
TCONS_00062408-exon-scaffold_364-1510915933:149709..149862TCONS_00062408-exon-scaffold_364-1510915933:149709..149862Clytia hemisphaericaexon
TCONS_00062408-exon-scaffold_364-1491911889:153932..155595TCONS_00062408-exon-scaffold_364-1491911889:153932..155595Clytia hemisphaericaexon
TCONS_00062408-exon-scaffold_364-1491911889:149709..149862TCONS_00062408-exon-scaffold_364-1491911889:149709..149862Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_364supercontigscaffold_364:149709..155595 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.474352	0	0	0	1.5557	0.680251	0	0.447227	0	0.299661	0.702528	0	1.72268	2.0412	0	0	0.53657	0.328506	0	0	0	0	0	0	0	0	0.189866	0	4.0769e-07
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062408 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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